Rw7G006250

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017544
Physical Location & Seq
Forward (+)
5309654 .. 5310446
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006250.1

Sequence Viewer

Length: 690 bp
ATGAGCCCCCATGCAAATAAGATCACCACCAACAACACCACCACCACCAATGCCCTATATCCACCGCCGTTGAAGATCAACAAGGACTCCCATTTCATCAAGAAACCCTCCTCCTCCTCCTCCACCTCTTCGCCGCCGTCGTCGTCATCCTCATCGTCCACGTATGCAATGTTAGGGTCCACCGCCACGAGACCGCCGCAGCAGCAGCGCCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGGCGCTGGTGCAGAAGCTCACCGGCCTCTCACGGTTCGAGGATGACACGTCGCCGCCTCCCTCGGCGGCGGCGAAATCCGAACCGCTAGAGACGGGAAATAACAACAACAACAACGTTGGCATGTCGTCATTGGAGCAGGAGATGATGCATAAGAGCCCTAATCAGGTTAATAGCAACAAGGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAACAACGTAGGAGGAGGAGGGGATTCATCATCGTGCTTTGTGCCGCCGAATCCATATCTAACCAACATTCCGGTGTTCACGCCGAACACGGATTTCTTGTGCACCAATTCCATGAACATATTTAATTACGACTCTATGATCGATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

229

Amino Acids

24.95

Weight (kDa)

6.43

Isoelectric Point (pI)

70.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 77 - 101 2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AclI AACGTT 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 73
AjiI CACGTC 1 cut(s) 321
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 184, 356
Alw44I GTGCAC 1 cut(s) 637
AoxI GGCC 1 cut(s) 295
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 5 cut(s) 199, 202, 205, 510, 513
AspLEI GCGC 2 cut(s) 210, 277
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 5 cut(s) 16, 229, 283, 466, 502
AvaII GGWCC 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 8, 431
BauI CACGAG 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 5 cut(s) 211, 214, 217, 522, 525
BceAI ACGGC 2 cut(s) 52, 121
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 184, 356
BfaI CTAG 1 cut(s) 359
BfoI RGCGCY 2 cut(s) 211, 278
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 678
BsaAI YACGTR 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 3 cut(s) 146, 246, 319
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 174
BseRI GAGGAG 6 cut(s) 100, 103, 106, 109, 564, 567
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 5 cut(s) 211, 214, 217, 522, 525
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 297
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 3 cut(s) 215, 294, 608
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 184, 356
BsmBI CGTCTC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 3 cut(s) 8, 431, 641
Bsp143I GATC 5 cut(s) 21, 75, 219, 675, 679
BspANI GGCC 1 cut(s) 297
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 5 cut(s) 21, 75, 219, 675, 679
BssSI CACGAG 1 cut(s) 187
Bst2BI CACGAG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 306, 524
Bst6I CTCTTC 2 cut(s) 133, 495
BstBAI YACGTR 1 cut(s) 162
BstF5I GGATG 3 cut(s) 146, 246, 319
BstFNI CGCG 1 cut(s) 262
BstH2I RGCGCY 2 cut(s) 211, 278
BstHHI GCGC 2 cut(s) 210, 277
BstKTI GATC 5 cut(s) 24, 78, 222, 678, 682
BstMAI GTCTC 2 cut(s) 184, 356
BstMBI GATC 5 cut(s) 21, 75, 219, 675, 679
BstMWI GCNNNNNNNGC 2 cut(s) 202, 205
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 5 cut(s) 211, 214, 217, 522, 525
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 678
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 3 cut(s) 146, 246, 319
CfoI GCGC 2 cut(s) 210, 277
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 177
ClaI ATCGAT 1 cut(s) 678
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 11, 271, 394, 649
CviJI RGCY 4 cut(s) 6, 289, 297, 429
CviKI_1 RGCY 4 cut(s) 6, 289, 297, 429
DpnI GATC 5 cut(s) 23, 77, 221, 677, 681
DpnII GATC 5 cut(s) 21, 75, 219, 675, 679
DraIII CACNNNGTG 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 133, 495
EarI CTCTTC 2 cut(s) 133, 495
Eco24I GRGCYC 2 cut(s) 8, 431
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 8, 431
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 4 cut(s) 14, 274, 397, 652
FatI CATG 4 cut(s) 10, 270, 393, 648
FauI CCCGC 1 cut(s) 267
FbaI TGATCA 1 cut(s) 219
FokI GGATG 3 cut(s) 133, 233, 326
FriOI GRGCYC 2 cut(s) 8, 431
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 209, 276
HaeII RGCGCY 2 cut(s) 211, 278
HaeIII GGCC 1 cut(s) 297
HapII CCGG 3 cut(s) 215, 294, 608
HhaI GCGC 2 cut(s) 210, 277
Hin1II CATG 4 cut(s) 14, 274, 397, 652
Hin6I GCGC 2 cut(s) 208, 275
HinP1I GCGC 2 cut(s) 208, 275
HinfI GANTC 5 cut(s) 86, 479, 560, 586, 668
HpaII CCGG 3 cut(s) 215, 294, 608
HphI GGTGA 5 cut(s) 16, 229, 283, 466, 502
Hpy166II GTNNAC 4 cut(s) 159, 180, 615, 639
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 4 cut(s) 159, 180, 615, 639
Hpy99I CGWCG 5 cut(s) 142, 145, 325, 473, 490
HpyCH4III ACNGT 2 cut(s) 306, 524
HpyCH4IV ACGT 4 cut(s) 161, 320, 387, 543
HpyCH4V TGCA 6 cut(s) 14, 167, 283, 421, 510, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 205
HpySE526I ACGT 4 cut(s) 161, 320, 387, 543
Hsp92II CATG 4 cut(s) 14, 274, 397, 652
HspAI GCGC 2 cut(s) 208, 275
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 5 cut(s) 21, 75, 219, 675, 679
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 6 cut(s) 228, 263, 307, 395, 422, 621
Lsp1109I GCAGC 5 cut(s) 211, 214, 217, 522, 525
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 359
MaeII ACGT 4 cut(s) 161, 320, 387, 543
MaeIII GTNAC 1 cut(s) 263
MalI GATC 5 cut(s) 23, 77, 221, 677, 681
MboI GATC 5 cut(s) 21, 75, 219, 675, 679
MboII GAAGA 4 cut(s) 85, 120, 474, 512
MhlI GDGCHC 3 cut(s) 8, 431, 641
MluCI AATT 3 cut(s) 505, 643, 661
MlyI GAGTC 2 cut(s) 80, 662
Mph1103I ATGCAT 1 cut(s) 423
MseI TTAA 3 cut(s) 441, 537, 660
MslI CAYNNNNRTG 3 cut(s) 261, 568, 608
MspI CCGG 3 cut(s) 215, 294, 608
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 232
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 202, 205
NciI CCSGG 1 cut(s) 215
NdeII GATC 5 cut(s) 21, 75, 219, 675, 679
NlaIII CATG 4 cut(s) 14, 274, 397, 652
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 3 cut(s) 137, 341, 474
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 479, 560, 586
PleI GAGTC 2 cut(s) 80, 662
PpsI GAGTC 2 cut(s) 80, 662
Ppu21I YACGTR 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 177
RseI CAYNNNNRTG 3 cut(s) 261, 568, 608
SaqAI TTAA 3 cut(s) 441, 537, 660
Sau3AI GATC 5 cut(s) 21, 75, 219, 675, 679
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 2 cut(s) 80, 662
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 8, 431, 641
SetI ASST 8 cut(s) 128, 164, 291, 323, 390, 441, 456, 546
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 177
SmiMI CAYNNNNRTG 3 cut(s) 261, 568, 608
Sse9I AATT 3 cut(s) 505, 643, 661
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 306, 524
TaiI ACGT 4 cut(s) 164, 323, 390, 546
TaqI TCGA 2 cut(s) 309, 678
TasI AATT 3 cut(s) 505, 643, 661
TauI GCSGC 6 cut(s) 136, 199, 328, 341, 344, 583
TfiI GAWTC 3 cut(s) 479, 560, 586
Tru1I TTAA 3 cut(s) 441, 537, 660
Tru9I TTAA 3 cut(s) 441, 537, 660
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 5 cut(s) 199, 202, 205, 510, 513
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 4 cut(s) 85, 259, 552, 665
TspGWI ACGGA 1 cut(s) 641
VneI GTGCAC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 177
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.