Rmu_sc0010190.1_g000012

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010190.1
OG0017544
Physical Location & Seq
Reverse (-)
47581 .. 47994
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010190.1_g000012.1.cds

Sequence Viewer

Length: 414 bp
atgtcgctggtgcagaagctcaccggcctctcgcggttcgaagatgacacgtcgccggcggcggcgaaacccgaaccgctagagacgggaaataacaacaacaacaacaacgttggcatgtcgtcattggaggaggagatgatgcataagagccctaatcaggttaatagcaacaatgtgatgataagaaacgacgacaacgaatcttcgtcggtgattaccgaagagaattgcagcagcaataacagtaataataatcttaacaacgtaggaggaggaggggattcatcatcgtgctttgtgccgccgaatccatatctaaccaacattccggtgttcacgccgaacacggatttcttgtgcaccaattccatgaacatatttaattacgactctatgatcgatcatcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

137

Amino Acids

14.98

Weight (kDa)

4.22

Isoelectric Point (pI)

66.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 5 cut(s) 34, 59, 62, 77, 305
AclI AACGTT 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 48
AjiI CACGTC 1 cut(s) 51
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 77
Alw44I GTGCAC 1 cut(s) 361
AoxI GGCC 1 cut(s) 25
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 234, 237
AsuHPI GGTGA 2 cut(s) 13, 226
AsuII TTCGAA 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 246, 249
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 80
BisI GCNGC 5 cut(s) 60, 63, 235, 238, 305
BlsI GCNGC 5 cut(s) 61, 64, 236, 239, 306
BmgBI CACGTC 1 cut(s) 51
BmsI GCATC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 2 cut(s) 23, 55
BseCI ATCGAT 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 160
BseRI GAGGAG 4 cut(s) 146, 149, 288, 291
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 2 cut(s) 246, 249
BsgI GTGCAG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 27
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 3 cut(s) 24, 56, 332
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 155, 365
Bsp143I GATC 2 cut(s) 399, 403
BspACI CCGC 5 cut(s) 34, 59, 62, 77, 305
BspANI GGCC 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 23, 55
BssAI RCCGGY 2 cut(s) 23, 55
BssMI GATC 2 cut(s) 399, 403
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 57
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 2 cut(s) 402, 406
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 399, 403
BstNSI RCATGY 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 246, 249
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 402
BtrI CACGTC 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 57
Cfr10I RCCGGY 2 cut(s) 23, 55
ClaI ATCGAT 1 cut(s) 402
CviAII CATG 2 cut(s) 118, 373
CviJI RGCY 3 cut(s) 19, 27, 153
CviKI_1 RGCY 3 cut(s) 19, 27, 153
DpnI GATC 2 cut(s) 401, 405
DpnII GATC 2 cut(s) 399, 403
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 121, 376
FaiI YATR 6 cut(s) 119, 147, 316, 374, 380, 398
FatI CATG 2 cut(s) 117, 372
Fnu4HI GCNGC 5 cut(s) 60, 63, 235, 238, 305
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 60, 63, 235, 238, 305
FspBI CTAG 1 cut(s) 80
GluI GCNGC 5 cut(s) 60, 63, 235, 238, 305
HaeIII GGCC 1 cut(s) 27
HapII CCGG 3 cut(s) 24, 56, 332
Hin1II CATG 2 cut(s) 121, 376
HinfI GANTC 4 cut(s) 203, 284, 310, 392
HpaII CCGG 3 cut(s) 24, 56, 332
HphI GGTGA 2 cut(s) 13, 226
Hpy166II GTNNAC 2 cut(s) 339, 363
Hpy8I GTNNAC 2 cut(s) 339, 363
Hpy99I CGWCG 3 cut(s) 55, 197, 214
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 3 cut(s) 50, 111, 267
HpyCH4V TGCA 4 cut(s) 13, 145, 234, 363
HpySE526I ACGT 3 cut(s) 50, 111, 267
Hsp92II CATG 2 cut(s) 121, 376
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 399, 403
LpnPI CCDG 4 cut(s) 37, 69, 146, 345
Lsp1109I GCAGC 2 cut(s) 246, 249
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 80
MaeII ACGT 3 cut(s) 50, 111, 267
MalI GATC 2 cut(s) 401, 405
MboI GATC 2 cut(s) 399, 403
MboII GAAGA 3 cut(s) 53, 198, 236
MhlI GDGCHC 2 cut(s) 155, 365
MluCI AATT 3 cut(s) 229, 367, 385
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 6 cut(s) 38, 124, 127, 266, 269, 272
Mph1103I ATGCAT 1 cut(s) 147
MreI CGCCGGCG 1 cut(s) 55
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 3 cut(s) 165, 261, 384
MslI CAYNNNNRTG 2 cut(s) 292, 332
MspI CCGG 3 cut(s) 24, 56, 332
MvnI CGCG 1 cut(s) 34
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 2 cut(s) 399, 403
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 2 cut(s) 121, 376
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 121
NspV TTCGAA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 203, 284, 310
PkrI GCNGC 5 cut(s) 61, 64, 236, 239, 306
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Psp1406I AACGTT 1 cut(s) 111
RseI CAYNNNNRTG 2 cut(s) 292, 332
SaqAI TTAA 3 cut(s) 165, 261, 384
SatI GCNGC 5 cut(s) 60, 63, 235, 238, 305
Sau3AI GATC 2 cut(s) 399, 403
SchI GAGTC 1 cut(s) 386
SduI GDGCHC 2 cut(s) 155, 365
SetI ASST 5 cut(s) 21, 53, 114, 165, 270
SfaNI GCATC 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 39
SgrAI CRCCGGYG 1 cut(s) 55
SmiMI CAYNNNNRTG 2 cut(s) 292, 332
Sse9I AATT 3 cut(s) 229, 367, 385
SsiI CCGC 5 cut(s) 34, 59, 62, 77, 305
SspMI CTAG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 3 cut(s) 53, 114, 270
TaqI TCGA 2 cut(s) 39, 402
TasI AATT 3 cut(s) 229, 367, 385
TauI GCSGC 3 cut(s) 62, 65, 307
TfiI GAWTC 3 cut(s) 203, 284, 310
Tru1I TTAA 3 cut(s) 165, 261, 384
Tru9I TTAA 3 cut(s) 165, 261, 384
TseI GCWGC 2 cut(s) 234, 237
TspDTI ATGAA 2 cut(s) 276, 389
TspGWI ACGGA 1 cut(s) 365
VneI GTGCAC 1 cut(s) 361
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.