Rh7BG075200

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017544
Physical Location & Seq
Forward (+)
5110582 .. 5111115
534 bp
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UTR
Exon/CDS
Intron
Rh7BG075200.1

Sequence Viewer

Length: 534 bp
ATGTTAGGGTCCACCGCCACGAGACCGCCGCAGCAGCAGCGCCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGGCGCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTCGAGGATGACACGTCGCCGCCTCCCTCGGCGGCGGCGAAATCCGAACCGCCAGAGACGGGAAATAACAACAACAACAACAACAACGTTGGCATGTCGTCATTGGAGGAGGAGATGATGAATAAGAGCCCTAATCAGGTTAATAGCAACAATGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAACAACGTAGGAGGAGGAGGAGGAGGGGATTCATCATCGTGCTTTGTGCCGCCGAATCCATATCTAACCAACATTCCGGTGTTCACGCCGAACACGGATTTCTTGTGCACCAATTCCATGAACATATTTAATTACGACTCTATGATCGATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

177

Amino Acids

19.37

Weight (kDa)

4.92

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 21 - 45 1.4e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 94, 136
AclI AACGTT 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 197, 274
AflIII ACRYGT 1 cut(s) 150
AjiI CACGTC 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 2 cut(s) 16, 188
Alw44I GTGCAC 1 cut(s) 481
AoxI GGCC 1 cut(s) 127
ApaLI GTGCAC 1 cut(s) 481
ApeKI GCWGC 5 cut(s) 31, 34, 37, 348, 351
AspLEI GCGC 2 cut(s) 42, 109
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 61, 115, 340
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 485
BanII GRGCYC 1 cut(s) 269
BauI CACGAG 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 485
BbvI GCAGC 5 cut(s) 43, 46, 49, 360, 363
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 16, 188
BfoI RGCGCY 2 cut(s) 43, 110
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 522
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 274
Bse118I RCCGGY 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 78, 151
BseLI CCNNNNNNNGG 2 cut(s) 197, 274
BseRI GAGGAG 6 cut(s) 260, 263, 402, 405, 408, 411
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 5 cut(s) 43, 46, 49, 360, 363
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 94, 136
BshFI GGCC 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 485
BsiSI CCGG 3 cut(s) 47, 126, 452
BslI CCNNNNNNNGG 2 cut(s) 197, 274
BsmAI GTCTC 2 cut(s) 16, 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 269, 485
Bsp143I GATC 3 cut(s) 51, 519, 523
BspANI GGCC 1 cut(s) 129
BspDI ATCGAT 1 cut(s) 522
BspFNI CGCG 2 cut(s) 94, 136
BspLI GGNNCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 51, 519, 523
BssSI CACGAG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 333
BstF5I GGATG 2 cut(s) 78, 151
BstFNI CGCG 2 cut(s) 94, 136
BstH2I RGCGCY 2 cut(s) 43, 110
BstHHI GCGC 2 cut(s) 42, 109
BstKTI GATC 3 cut(s) 54, 522, 526
BstMAI GTCTC 2 cut(s) 16, 188
BstMBI GATC 3 cut(s) 51, 519, 523
BstMWI GCNNNNNNNGC 2 cut(s) 34, 37
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 485
BstUI CGCG 2 cut(s) 94, 136
BstV1I GCAGC 5 cut(s) 43, 46, 49, 360, 363
Bsu15I ATCGAT 1 cut(s) 522
BsuRI GGCC 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 522
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 78, 151
CfoI GCGC 2 cut(s) 42, 109
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 522
CviAII CATG 3 cut(s) 103, 232, 493
CviJI RGCY 3 cut(s) 121, 129, 267
CviKI_1 RGCY 3 cut(s) 121, 129, 267
DpnI GATC 3 cut(s) 53, 521, 525
DpnII GATC 3 cut(s) 51, 519, 523
DraIII CACNNNGTG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 3 cut(s) 106, 235, 496
FaiI YATR 6 cut(s) 104, 233, 436, 494, 500, 518
FatI CATG 3 cut(s) 102, 231, 492
FauI CCCGC 1 cut(s) 99
FbaI TGATCA 1 cut(s) 51
FokI GGATG 2 cut(s) 65, 158
FriOI GRGCYC 1 cut(s) 269
GlaI GCGC 2 cut(s) 41, 108
HaeII RGCGCY 2 cut(s) 43, 110
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 47, 126, 452
HhaI GCGC 2 cut(s) 42, 109
Hin1II CATG 3 cut(s) 106, 235, 496
Hin6I GCGC 2 cut(s) 40, 107
HinP1I GCGC 2 cut(s) 40, 107
HinfI GANTC 4 cut(s) 317, 404, 430, 512
HpaII CCGG 3 cut(s) 47, 126, 452
HphI GGTGA 3 cut(s) 61, 115, 340
Hpy166II GTNNAC 3 cut(s) 12, 459, 483
Hpy188I TCNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 12, 459, 483
Hpy99I CGWCG 3 cut(s) 157, 311, 328
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 3 cut(s) 152, 225, 381
HpyCH4V TGCA 3 cut(s) 115, 348, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 37
HpySE526I ACGT 3 cut(s) 152, 225, 381
Hsp92II CATG 3 cut(s) 106, 235, 496
HspAI GCGC 2 cut(s) 40, 107
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 519, 523
LpnPI CCDG 6 cut(s) 60, 95, 139, 204, 260, 465
Lsp1109I GCAGC 5 cut(s) 43, 46, 49, 360, 363
MaeII ACGT 3 cut(s) 152, 225, 381
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 53, 521, 525
MboI GATC 3 cut(s) 51, 519, 523
MboII GAAGA 2 cut(s) 312, 350
MhlI GDGCHC 2 cut(s) 269, 485
MluCI AATT 3 cut(s) 343, 487, 505
MlyI GAGTC 1 cut(s) 506
MseI TTAA 3 cut(s) 279, 375, 504
MslI CAYNNNNRTG 3 cut(s) 93, 412, 452
MspI CCGG 3 cut(s) 47, 126, 452
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 2 cut(s) 94, 136
MwoI GCNNNNNNNGC 2 cut(s) 34, 37
NciI CCSGG 1 cut(s) 47
NdeII GATC 3 cut(s) 51, 519, 523
NlaIII CATG 3 cut(s) 106, 235, 496
NlaIV GGNNCC 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 93
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 312
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 317, 404, 430
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Psp1406I AACGTT 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 9
RseI CAYNNNNRTG 3 cut(s) 93, 412, 452
SaqAI TTAA 3 cut(s) 279, 375, 504
Sau3AI GATC 3 cut(s) 51, 519, 523
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 2 cut(s) 269, 485
SetI ASST 5 cut(s) 123, 155, 228, 279, 384
SinI GGWCC 1 cut(s) 9
SmiMI CAYNNNNRTG 3 cut(s) 93, 412, 452
Sse9I AATT 3 cut(s) 343, 487, 505
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 3 cut(s) 155, 228, 384
TaqI TCGA 2 cut(s) 141, 522
TasI AATT 3 cut(s) 343, 487, 505
TauI GCSGC 5 cut(s) 31, 160, 173, 176, 427
TfiI GAWTC 3 cut(s) 317, 404, 430
Tru1I TTAA 3 cut(s) 279, 375, 504
Tru9I TTAA 3 cut(s) 279, 375, 504
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 5 cut(s) 31, 34, 37, 348, 351
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 91, 272, 396, 509
TspGWI ACGGA 1 cut(s) 485
VneI GTGCAC 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 9
XceI RCATGY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.