Rroxscaffold_3G00268840

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017544
Physical Location & Seq
Reverse (-)
61884097 .. 61884690
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268840.1

Sequence Viewer

Length: 594 bp
ATGAGCCCCCATGCAAATAAGATCACCACCACCACCACCACCACCACCAATGCCCTATATCCACCGCCGTTGAAGATCAACAAGGACTCCCATTTCATCAAGAAACCCTCCTCCTCCTCCACCTCTTCGCCGCCGTCGTCGTCATCCTCATCGTCCACGTACGCAATGTTAGGGTCCACCGCCACGAGACCGCCGCAGCAGCAGCGGCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGGCGCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTTGAGGATGACACGTCGCCGCCTCCCTCGGGGGCGGCGAAACCCGAACCGCCAGAGACGGGAAATAACAACAACAACAACGTTGGCATGTCGTCATTGGAGGAGGAGATGATGAATAAGAGCCCTAATCAGGTTAATAGCAACAATGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAACAACGTAGGAGGAGGAGGGATTCATCATCGTGCTTTGTGCCGCCGAATCCATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

197

Amino Acids

21.37

Weight (kDa)

8.61

Isoelectric Point (pI)

71.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 76 - 100 1.6e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 2 cut(s) 259, 301
AclI AACGTT 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 332, 362, 433
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 1 cut(s) 73
AjiI CACGTC 1 cut(s) 318
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 181, 353
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 5 cut(s) 196, 199, 202, 507, 510
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 16, 226, 280, 499
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 8, 428
BauI CACGAG 1 cut(s) 184
BbvI GCAGC 5 cut(s) 208, 211, 214, 519, 522
BceAI ACGGC 2 cut(s) 52, 118
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 181, 353
BfoI RGCGCY 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 175, 209
BmrFI CCNGG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 362, 433
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 3 cut(s) 143, 243, 316
BseLI CCNNNNNNNGG 3 cut(s) 332, 362, 433
BseMI GCAATG 1 cut(s) 171
BseRI GAGGAG 7 cut(s) 100, 103, 106, 419, 422, 561, 564
BseXI GCAGC 5 cut(s) 208, 211, 214, 519, 522
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 2 cut(s) 259, 301
BshFI GGCC 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 2 cut(s) 212, 291
BsiWI CGTACG 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 332, 362, 433
BsmAI GTCTC 2 cut(s) 181, 353
BsmBI CGTCTC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 8, 428
Bsp143I GATC 3 cut(s) 21, 75, 216
BspANI GGCC 1 cut(s) 294
BspFNI CGCG 2 cut(s) 259, 301
BspLI GGNNCC 2 cut(s) 175, 209
BspT107I GGYRCC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 3 cut(s) 21, 75, 216
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 2 cut(s) 130, 492
BstBAI YACGTR 1 cut(s) 159
BstF5I GGATG 3 cut(s) 143, 243, 316
BstFNI CGCG 2 cut(s) 259, 301
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 3 cut(s) 24, 78, 219
BstMAI GTCTC 2 cut(s) 181, 353
BstMBI GATC 3 cut(s) 21, 75, 216
BstMWI GCNNNNNNNGC 3 cut(s) 199, 202, 205
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 210
BstUI CGCG 2 cut(s) 259, 301
BstV1I GCAGC 5 cut(s) 208, 211, 214, 519, 522
BsuRI GGCC 1 cut(s) 294
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 3 cut(s) 143, 243, 316
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 3 cut(s) 11, 268, 391
CviJI RGCY 4 cut(s) 6, 286, 294, 426
CviKI_1 RGCY 4 cut(s) 6, 286, 294, 426
CviQI GTAC 1 cut(s) 160
DpnI GATC 3 cut(s) 23, 77, 218
DpnII GATC 3 cut(s) 21, 75, 216
DraIII CACNNNGTG 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 130, 492
EarI CTCTTC 2 cut(s) 130, 492
Eco24I GRGCYC 2 cut(s) 8, 428
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 331
EcoT38I GRGCYC 2 cut(s) 8, 428
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 3 cut(s) 14, 271, 394
FaiI YATR 5 cut(s) 12, 58, 269, 392, 588
FatI CATG 3 cut(s) 10, 267, 390
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 216
FokI GGATG 3 cut(s) 130, 230, 323
FriOI GRGCYC 2 cut(s) 8, 428
GlaI GCGC 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 212, 291
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 14, 271, 394
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 4 cut(s) 86, 476, 556, 582
HpaII CCGG 2 cut(s) 212, 291
HphI GGTGA 4 cut(s) 16, 226, 280, 499
Hpy166II GTNNAC 2 cut(s) 156, 177
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 156, 177
Hpy99I CGWCG 5 cut(s) 139, 142, 322, 470, 487
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 4 cut(s) 158, 317, 384, 540
HpyCH4V TGCA 3 cut(s) 14, 280, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 202, 205
HpySE526I ACGT 4 cut(s) 158, 317, 384, 540
Hsp92II CATG 3 cut(s) 14, 271, 394
HspAI GCGC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 3 cut(s) 21, 75, 216
LpnPI CCDG 5 cut(s) 225, 260, 304, 369, 419
Lsp1109I GCAGC 5 cut(s) 208, 211, 214, 519, 522
MaeII ACGT 4 cut(s) 158, 317, 384, 540
MaeIII GTNAC 1 cut(s) 260
MalI GATC 3 cut(s) 23, 77, 218
MboI GATC 3 cut(s) 21, 75, 216
MboII GAAGA 4 cut(s) 85, 117, 471, 509
MhlI GDGCHC 2 cut(s) 8, 428
MluCI AATT 1 cut(s) 502
MlyI GAGTC 1 cut(s) 80
MseI TTAA 2 cut(s) 438, 534
MslI CAYNNNNRTG 2 cut(s) 258, 564
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 2 cut(s) 212, 291
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 2 cut(s) 259, 301
MwoI GCNNNNNNNGC 3 cut(s) 199, 202, 205
NciI CCSGG 1 cut(s) 212
NdeII GATC 3 cut(s) 21, 75, 216
NlaIII CATG 3 cut(s) 14, 271, 394
NlaIV GGNNCC 2 cut(s) 175, 209
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 258
PcsI WCGNNNNNNNCGW 3 cut(s) 134, 338, 471
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 476, 556, 582
Pfl23II CGTACG 1 cut(s) 159
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 384
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 175, 209
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 258, 564
SaqAI TTAA 2 cut(s) 438, 534
Sau3AI GATC 3 cut(s) 21, 75, 216
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 2 cut(s) 8, 428
SetI ASST 7 cut(s) 125, 161, 288, 320, 387, 438, 543
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 258, 564
Sse9I AATT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 4 cut(s) 161, 320, 387, 543
TasI AATT 1 cut(s) 502
TauI GCSGC 6 cut(s) 133, 196, 208, 325, 341, 579
TfiI GAWTC 3 cut(s) 476, 556, 582
Tru1I TTAA 2 cut(s) 438, 534
Tru9I TTAA 2 cut(s) 438, 534
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 5 cut(s) 196, 199, 202, 507, 510
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 85, 256, 431, 548
VpaK11BI GGWCC 1 cut(s) 174
XceI RCATGY 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.