RLG00000004902

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017544
Physical Location & Seq
Reverse (-)
63541468 .. 63542139
672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004902

Sequence Viewer

Length: 672 bp
ATGAGCCCCCATGCAAATAAGATCACCACCACCACCACCACCACCAATGCCCTATATCCACCGCCGTTGAAGATCAACAAGGACTCCCATTTCATCAAGAAACCCTCCTCCTCCTCCTCCACCTCTTCGCCGCCGTCGTCGTCATCCTCATCGTCCACGTACGCAATGTTAGGGTCCACCGCCACGAGACCGCCGCAGCAGCAGCGCCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGGCGCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTCGAGGATGACACGTCACCGCCTCCCTCGGCGGCGGCGAAACCCGAACCGCCAGAGAAGGGAAATAACAACAACAACGTTGGCATGTCGTCATTGGAGGAGGAGATGATGAATAAGAGCCCTAATCAGGTTAATAGCAACAATGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAACAACGTAGGAGGAGGAGGAGGAGGGGATTCATCATCGTGCTTTGTGCCGCCGAATCCATATCTAACCAACATTCCGGTGTTCACGCCGAACACGGATTTCTTGTGCACCAATTCCATGAACATATTTACGACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

224

Amino Acids

23.99

Weight (kDa)

6.28

Isoelectric Point (pI)

71.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 76 - 100 1.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017544)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18360
fragaria_vesca FvH4_5g11980
prunus_persica Prupe.5G222000_v2.0.a1
rosa_laevigata RLG00000004902
rosa_multiflora Rmu_sc0010190.1_g000012
rosa_roxburghii Rroxscaffold_3G00268840
rosa_rugosa Rorug06G0470100
rosa_samantha Rh7AG072600 Rh7BG075200 Rh7CG075400 Rh7DG075100
rosa_wichuraiana Rw7G006250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 259, 301
AclI AACGTT 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 362, 430
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 1 cut(s) 70
AjiI CACGTC 1 cut(s) 318
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 1 cut(s) 181
Alw44I GTGCAC 1 cut(s) 637
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 5 cut(s) 196, 199, 202, 504, 507
AspLEI GCGC 2 cut(s) 207, 274
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 5 cut(s) 16, 226, 280, 312, 496
AvaII GGWCC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 8, 425
BauI CACGAG 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 5 cut(s) 208, 211, 214, 516, 519
BceAI ACGGC 2 cut(s) 49, 118
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 181
BfoI RGCGCY 2 cut(s) 208, 275
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 430
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 3 cut(s) 143, 243, 316
BseLI CCNNNNNNNGG 2 cut(s) 362, 430
BseMI GCAATG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 5 cut(s) 208, 211, 214, 516, 519
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 2 cut(s) 259, 301
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 3 cut(s) 212, 291, 608
BsiWI CGTACG 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 362, 430
BsmAI GTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 3 cut(s) 8, 425, 641
Bsp143I GATC 3 cut(s) 21, 72, 216
BspANI GGCC 1 cut(s) 294
BspFNI CGCG 2 cut(s) 259, 301
BspLI GGNNCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 3 cut(s) 21, 72, 216
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 2 cut(s) 130, 489
BstBAI YACGTR 1 cut(s) 159
BstF5I GGATG 3 cut(s) 143, 243, 316
BstFNI CGCG 2 cut(s) 259, 301
BstH2I RGCGCY 2 cut(s) 208, 275
BstHHI GCGC 2 cut(s) 207, 274
BstKTI GATC 3 cut(s) 24, 75, 219
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 21, 72, 216
BstMWI GCNNNNNNNGC 2 cut(s) 199, 202
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 2 cut(s) 259, 301
BstV1I GCAGC 5 cut(s) 208, 211, 214, 516, 519
BsuRI GGCC 1 cut(s) 294
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 3 cut(s) 143, 243, 316
CfoI GCGC 2 cut(s) 207, 274
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 4 cut(s) 11, 268, 388, 649
CviJI RGCY 4 cut(s) 6, 286, 294, 423
CviKI_1 RGCY 4 cut(s) 6, 286, 294, 423
CviQI GTAC 1 cut(s) 160
DpnI GATC 3 cut(s) 23, 74, 218
DpnII GATC 3 cut(s) 21, 72, 216
DraIII CACNNNGTG 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 130, 489
EarI CTCTTC 2 cut(s) 130, 489
Eco24I GRGCYC 2 cut(s) 8, 425
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 174
EcoT38I GRGCYC 2 cut(s) 8, 425
FaeI CATG 4 cut(s) 14, 271, 391, 652
FaiI YATR 8 cut(s) 12, 55, 269, 389, 592, 650, 656, 670
FatI CATG 4 cut(s) 10, 267, 387, 648
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 216
FokI GGATG 3 cut(s) 130, 230, 323
FriOI GRGCYC 2 cut(s) 8, 425
GlaI GCGC 2 cut(s) 206, 273
HaeII RGCGCY 2 cut(s) 208, 275
HaeIII GGCC 1 cut(s) 294
HapII CCGG 3 cut(s) 212, 291, 608
HhaI GCGC 2 cut(s) 207, 274
Hin1II CATG 4 cut(s) 14, 271, 391, 652
Hin6I GCGC 2 cut(s) 205, 272
HinP1I GCGC 2 cut(s) 205, 272
HinfI GANTC 5 cut(s) 83, 473, 560, 586, 664
HpaII CCGG 3 cut(s) 212, 291, 608
HphI GGTGA 5 cut(s) 16, 226, 280, 312, 496
Hpy166II GTNNAC 4 cut(s) 156, 177, 615, 639
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 4 cut(s) 156, 177, 615, 639
Hpy99I CGWCG 4 cut(s) 139, 142, 467, 484
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 4 cut(s) 158, 317, 381, 537
HpyCH4V TGCA 4 cut(s) 14, 280, 504, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 202
HpySE526I ACGT 4 cut(s) 158, 317, 381, 537
Hsp92II CATG 4 cut(s) 14, 271, 391, 652
HspAI GCGC 2 cut(s) 205, 272
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 3 cut(s) 21, 72, 216
LpnPI CCDG 6 cut(s) 225, 260, 304, 369, 416, 621
Lsp1109I GCAGC 5 cut(s) 208, 211, 214, 516, 519
MaeII ACGT 4 cut(s) 158, 317, 381, 537
MaeIII GTNAC 2 cut(s) 260, 318
MalI GATC 3 cut(s) 23, 74, 218
MboI GATC 3 cut(s) 21, 72, 216
MboII GAAGA 4 cut(s) 82, 117, 468, 506
MhlI GDGCHC 3 cut(s) 8, 425, 641
MluCI AATT 2 cut(s) 499, 643
MlyI GAGTC 2 cut(s) 77, 658
MseI TTAA 2 cut(s) 435, 531
MslI CAYNNNNRTG 3 cut(s) 258, 568, 608
MspI CCGG 3 cut(s) 212, 291, 608
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 2 cut(s) 259, 301
MwoI GCNNNNNNNGC 2 cut(s) 199, 202
NciI CCSGG 1 cut(s) 212
NdeII GATC 3 cut(s) 21, 72, 216
NlaIII CATG 4 cut(s) 14, 271, 391, 652
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 260, 318
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 258
PcsI WCGNNNNNNNCGW 3 cut(s) 134, 338, 468
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 473, 560, 586
Pfl23II CGTACG 1 cut(s) 159
PleI GAGTC 2 cut(s) 77, 658
PpsI GAGTC 2 cut(s) 77, 658
Ppu21I YACGTR 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 381
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 3 cut(s) 258, 568, 608
SaqAI TTAA 2 cut(s) 435, 531
Sau3AI GATC 3 cut(s) 21, 72, 216
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 2 cut(s) 77, 658
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 3 cut(s) 8, 425, 641
SetI ASST 7 cut(s) 125, 161, 288, 320, 384, 435, 540
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 3 cut(s) 258, 568, 608
Sse9I AATT 2 cut(s) 499, 643
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 4 cut(s) 161, 320, 384, 540
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 499, 643
TauI GCSGC 5 cut(s) 133, 196, 338, 341, 583
TfiI GAWTC 3 cut(s) 473, 560, 586
Tru1I TTAA 2 cut(s) 435, 531
Tru9I TTAA 2 cut(s) 435, 531
TseFI GTSAC 2 cut(s) 260, 318
TseI GCWGC 5 cut(s) 196, 199, 202, 504, 507
Tsp45I GTSAC 2 cut(s) 260, 318
TspDTI ATGAA 5 cut(s) 82, 256, 428, 552, 665
TspGWI ACGGA 1 cut(s) 641
VneI GTGCAC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 174
XceI RCATGY 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.