AT3G18870
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014330
Physical Location & Seq
Reverse (-)
6508385 .. 6509343
959 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18870.1

Sequence Viewer

Length: 825 bp
ATGGCTGTTATTGCTTCACTTCATCATCTTCAACCTCTCTCGTCTTTCTCGTCTCCTCCTTCTCCTTCAAGCTCTAAGCCTCTCTATCTAAAATTCCAAACCTCACACCGTGAAAATCTAAGACACCTTTCTTCTCTCGGAATTGTTCCTCAGAATCCCCGACTTGCTCCTCCGGCGAATGATCTTTCCGTTATCCTCTCCGCCGTGAATCTCCTCAAATCGAAAGGAATCTCCGACGAAGATTTCCCACGCCTCGTTTTCCTCTGTCCACAGCTCTTCTCGCCCACTTTCGACATCTCTAAACTCGATCCCGTCTTCGATTTTCTCACCGGCGAGCTTGGAGCTTCCGCAGAAGAATCCAGGGGCTTAATCGTAAATTGCCCGAACATCCTCTTCTCCGACGTTGAGTATTGCTTGAGACCGACGCTTGTTTACCTTAAGGAGCTAGGGGTACGGAATCTGAACCGAGCCAGCAAGACGAACGCGCACGTGCTGAACACGAGAGTTGAGAAGCTAAGAGCAAAGATGAGATTCTTGAAGAGTATAGGTTTCGAACACGAGGAAGCAGCTAGAGTCTGTGGGAGAATCCCGGCGATATTCGGATACAGTGTTGAAGATAACTTGAGGCCCAAGTTCGAGTTTCTCGTTTACGACATGGAAAGAGAACTTGAAGAGCTCAAGAAGTTTCCGCAGTATTTTGCGTTTAGCTTGGGGAAGAGGATAAGGCCAAGACATTGGCATTTGAAGAAGAAGAACGTTAGGGTTTCGCTTAGTAGAATGTTAATGTGGGGTGATCAAAAATTCTACTCAAAATGGAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

274

Amino Acids

31.43

Weight (kDa)

9.67

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 112 - 268 1.1e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 485
AciI CCGC 3 cut(s) 201, 348, 689
AclI AACGTT 1 cut(s) 756
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 2 cut(s) 92, 800
AcvI CACGTG 1 cut(s) 490
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 453
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 6 cut(s) 32, 69, 538, 614, 671, 745
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 9 cut(s) 72, 274, 337, 344, 445, 514, 569, 676, 708
AluI AGCT 9 cut(s) 72, 274, 337, 344, 445, 514, 569, 676, 708
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 2 cut(s) 57, 412
AlwI GGATC 1 cut(s) 302
AoxI GGCC 2 cut(s) 626, 725
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 2 cut(s) 92, 800
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 627
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 319, 803
AsuII TTCGAA 1 cut(s) 552
BanII GRGCYC 1 cut(s) 678
BauI CACGAG 2 cut(s) 499, 557
BbrPI CACGTG 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 2 cut(s) 57, 412
BfaI CTAG 2 cut(s) 446, 570
BfrI CTTAAG 1 cut(s) 437
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 2 cut(s) 361, 590
BmgT120I GGNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 361, 590
BpiI GAAGAC 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 436, 643, 662
BpuMI CCSGG 1 cut(s) 590
BsaAI YACGTR 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 360
Bse118I RCCGGY 1 cut(s) 329
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 3 cut(s) 45, 159, 203
BseXI GCAGC 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 2 cut(s) 628, 727
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 3 cut(s) 173, 330, 590
BsmAI GTCTC 2 cut(s) 57, 412
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 2 cut(s) 628, 727
Bso31I GGTCTC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 181, 307, 793
BspACI CCGC 3 cut(s) 201, 348, 689
BspANI GGCC 2 cut(s) 628, 727
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 485
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 2 cut(s) 281, 666
BspT104I TTCGAA 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 3 cut(s) 181, 307, 793
BssSI CACGAG 2 cut(s) 499, 557
Bst2BI CACGAG 2 cut(s) 499, 557
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 110, 608
Bst6I CTCTTC 5 cut(s) 281, 398, 533, 666, 710
BstAFI CTTAAG 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 490
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 335, 472
BstDEI CTNAG 5 cut(s) 75, 119, 150, 515, 770
BstF5I GGATG 1 cut(s) 387
BstFNI CGCG 1 cut(s) 485
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 3 cut(s) 184, 310, 796
BstMAI GTCTC 2 cut(s) 57, 412
BstMBI GATC 3 cut(s) 181, 307, 793
BstMWI GCNNNNNNNGC 3 cut(s) 11, 173, 280
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 359, 588
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 735
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 2 cut(s) 628, 727
BtsCI GGATG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 2 cut(s) 335, 472
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 627
CseI GACGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 452
CviAII CATG 1 cut(s) 655
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 5 cut(s) 75, 119, 150, 515, 770
DpnI GATC 3 cut(s) 183, 309, 795
DpnII GATC 3 cut(s) 181, 307, 793
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 5 cut(s) 281, 398, 533, 666, 710
EarI CTCTTC 5 cut(s) 281, 398, 533, 666, 710
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 676
Eco72I CACGTG 1 cut(s) 490
EcoICRI GAGCTC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 678
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 1 cut(s) 658
FaiI YATR 3 cut(s) 545, 656, 823
FatI CATG 1 cut(s) 654
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 2 cut(s) 446, 570
GlaI GCGC 1 cut(s) 486
GluI GCNGC 1 cut(s) 567
HaeIII GGCC 2 cut(s) 628, 727
HapII CCGG 3 cut(s) 173, 330, 590
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 487
Hin1II CATG 1 cut(s) 658
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 8 cut(s) 154, 208, 228, 356, 457, 531, 573, 585
HpaII CCGG 3 cut(s) 173, 330, 590
HphI GGTGA 2 cut(s) 319, 803
Hpy166II GTNNAC 3 cut(s) 269, 433, 649
Hpy188I TCNGA 6 cut(s) 140, 153, 235, 400, 462, 602
Hpy188III TCNNGA 2 cut(s) 535, 679
Hpy8I GTNNAC 3 cut(s) 269, 433, 649
Hpy99I CGWCG 3 cut(s) 239, 404, 427
HpyAV CCTTC 2 cut(s) 69, 75
HpyCH4III ACNGT 2 cut(s) 110, 608
HpyCH4IV ACGT 3 cut(s) 402, 489, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 173, 280
HpyF3I CTNAG 5 cut(s) 75, 119, 150, 515, 770
HpySE526I ACGT 3 cut(s) 402, 489, 756
Hsp92II CATG 1 cut(s) 658
HspAI GCGC 1 cut(s) 485
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 181, 307, 793
LguI GCTCTTC 2 cut(s) 281, 666
LmnI GCTCC 3 cut(s) 172, 341, 442
LpnPI CCDG 6 cut(s) 186, 343, 346, 373, 484, 603
Lsp1109I GCAGC 1 cut(s) 578
MaeI CTAG 2 cut(s) 446, 570
MaeII ACGT 3 cut(s) 402, 489, 756
MalI GATC 3 cut(s) 183, 309, 795
MboI GATC 3 cut(s) 181, 307, 793
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 4 cut(s) 92, 141, 376, 800
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 2 cut(s) 258, 423
MseI TTAA 3 cut(s) 368, 438, 782
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 3 cut(s) 173, 330, 590
MspR9I CCNGG 2 cut(s) 361, 590
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 3 cut(s) 11, 173, 280
NciI CCSGG 1 cut(s) 590
NdeII GATC 3 cut(s) 181, 307, 793
NlaIII CATG 1 cut(s) 658
NspV TTCGAA 1 cut(s) 552
PciSI GCTCTTC 2 cut(s) 281, 666
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 642
PfeI GAWTC 7 cut(s) 154, 208, 228, 356, 457, 531, 585
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 1 cut(s) 581
PmaCI CACGTG 1 cut(s) 490
PmlI CACGTG 1 cut(s) 490
PpsI GAGTC 1 cut(s) 581
Ppu21I YACGTR 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 678
Psp1406I AACGTT 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 359
PspCI CACGTG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 359
PspPI GGNCC 1 cut(s) 627
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SacI GAGCTC 1 cut(s) 678
SapI GCTCTTC 2 cut(s) 281, 666
SaqAI TTAA 3 cut(s) 368, 438, 782
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 3 cut(s) 181, 307, 793
Sau96I GGNCC 1 cut(s) 627
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 2 cut(s) 361, 590
SduI GDGCHC 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 552
SgrAI CRCCGGYG 1 cut(s) 329
SmlI CTYRAG 4 cut(s) 415, 437, 622, 677
SmoI CTYRAG 4 cut(s) 415, 437, 622, 677
Sse9I AATT 4 cut(s) 92, 141, 376, 800
SsiI CCGC 3 cut(s) 201, 348, 689
SspMI CTAG 2 cut(s) 446, 570
SstI GAGCTC 1 cut(s) 678
StyD4I CCNGG 2 cut(s) 359, 588
TaaI ACNGT 2 cut(s) 110, 608
TaiI ACGT 3 cut(s) 405, 492, 759
TaqI TCGA 6 cut(s) 221, 291, 306, 318, 552, 636
TaqII GACCGA 1 cut(s) 436
TasI AATT 4 cut(s) 92, 141, 376, 800
TfiI GAWTC 7 cut(s) 154, 208, 228, 356, 457, 531, 585
Tru1I TTAA 3 cut(s) 368, 438, 782
Tru9I TTAA 3 cut(s) 368, 438, 782
TscAI CASTG 1 cut(s) 613
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 1 cut(s) 11
TspGWI ACGGA 2 cut(s) 178, 469
TspRI CASTG 1 cut(s) 613
Vha464I CTTAAG 1 cut(s) 437
XapI RAATTY 2 cut(s) 92, 800
XspI CTAG 2 cut(s) 446, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.