Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0014330

Physical Location & Seq

Genomic Coordinates Forward (+)

63968 .. 64807

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgccactacttcactctctctccctcctcccaactccatcttcttcttcctcatcatccttaatctcttctccccatccaaatgcaaaccctcacttcatcaagttccgcacctcctaccgcgaaaacgtccgctacctcaaaaccctacgcgtcatccgccctgacacaaaacccaacaagctccccctccccgacgccaccgaccacctcctcgccacagttaacttcctcaagtccaagggcttctccgactccgacttccaaagactcgccttcctctcccccaatctcttctcctccaacttcgaccccaccgacgtcgcccctgtcttcgacttcttagccgacgacctctccgcctcgtccgaacagtcctgcggcctcatcctccgctgccccgacctcctcttctccgacgtggagttctgcctccgtccgacgctgcgttttctcaaacaggtgggagtcgagaagctgagcacgccgacgaacctgaacgcgcatttgttgaacacaagggtggagaagcttagagggaaggtaaggttcctgaggagcttagggttttcgtacgaggaggcggtgaaggtgtgcgagaggctgccggcgatattcgggtacagtgtggaggggaatttgaggccaaaatacgagtatttggtggaggagatggagaggagtgtggaggagttgaagaagtttccgcagtattttgggttcagcttggagaagaaaatagtgccaaggcatttacatttgaaggagaggaatgtgaggattgctttgaataggatgttgttgtggagcgaccagaggttttatgcaaaatggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

279

Amino Acids

32.14

Weight (kDa)

9.45

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18870
fragaria_vesca	FvH4_2g08020
malus_domestica	MD10G1082300.v1.1
prunus_persica	Prupe.8G104800_v2.0.a1
pyrus_communis	pycom10g06490
rosa_chinensis	RchiOBHm_Chr6g0262541
rosa_laevigata	RLG00000014419
rosa_multiflora	Rmu_sc0000596.1_g000014
rosa_roxburghii	Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa	Rorug05G0598000
rosa_samantha	Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana	Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccII	CGCG	3 cut(s)	123, 153, 503
AciI	CCGC	9 cut(s)	109, 121, 133, 160, 360, 381, 394, 584, 707
AcsI	RAATTY	1 cut(s)	637
AcyI	GRCGYC	2 cut(s)	198, 321
AfaI	GTAC	2 cut(s)	575, 623
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	514, 697, 763, 790
AjiI	CACGTC	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	5 cut(s)	184, 478, 532, 561, 726
AluI	AGCT	5 cut(s)	184, 478, 532, 561, 726
Alw21I	GWGCWC	1 cut(s)	485
AoxI	GGCC	2 cut(s)	382, 644
ApeKI	GCWGC	3 cut(s)	396, 445, 604
ApoI	RAATTY	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	598
AxyI	CCTNAGG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	383, 432, 591
BccI	CCATC	3 cut(s)	46, 84, 667
BisI	GCNGC	4 cut(s)	382, 397, 446, 605
BlpI	GCTNAGC	1 cut(s)	479
BlsI	GCNGC	4 cut(s)	383, 398, 447, 606
BmgBI	CACGTC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	562
Bpu1102I	GCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	198, 321
BsaJI	CCNNGG	2 cut(s)	240, 746
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 341, 371
Bse118I	RCCGGY	1 cut(s)	607
Bse21I	CCTNAGG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	240, 746
BseGI	GGATG	5 cut(s)	56, 76, 156, 387, 801
BseMII	CTCAG	2 cut(s)	470, 545
BseRI	GAGGAG	9 cut(s)	17, 203, 289, 398, 571, 593, 683, 694, 704
BseXI	GCAGC	3 cut(s)	383, 432, 591
Bsh1236I	CGCG	3 cut(s)	123, 153, 503
BshFI	GGCC	2 cut(s)	384, 646
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	608
BsiWI	CGTACG	1 cut(s)	573
BsnI	GGCC	2 cut(s)	384, 646
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp1720I	GCTNAGC	1 cut(s)	479
BspACI	CCGC	9 cut(s)	109, 121, 133, 160, 360, 381, 394, 584, 707
BspANI	GGCC	2 cut(s)	384, 646
BspCNI	CTCAG	2 cut(s)	471, 546
BspFNI	CGCG	3 cut(s)	123, 153, 503
BspLI	GGNNCC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	240, 746
BssNI	GRCGYC	2 cut(s)	198, 321
BssT1I	CCWWGG	2 cut(s)	240, 746
Bst4CI	ACNGT	3 cut(s)	223, 375, 626
Bst6I	CTCTTC	3 cut(s)	73, 299, 416
BstACI	GRCGYC	2 cut(s)	198, 321
BstC8I	GCNNGC	2 cut(s)	485, 609
BstDEI	CTNAG	5 cut(s)	343, 479, 533, 554, 562
BstF5I	GGATG	5 cut(s)	56, 76, 156, 387, 801
BstFNI	CGCG	3 cut(s)	123, 153, 503
BstHHI	GCGC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 484
BstUI	CGCG	3 cut(s)	123, 153, 503
BstV1I	GCAGC	3 cut(s)	383, 432, 591
BstV2I	GAAGAC	1 cut(s)	325
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	384, 646
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	5 cut(s)	56, 76, 156, 387, 801
BtsIMutI	CAGTG	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	485, 609
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	607
CseI	GACGC	3 cut(s)	142, 206, 451
Csp6I	GTAC	2 cut(s)	574, 622
CviQI	GTAC	2 cut(s)	574, 622
DdeI	CTNAG	5 cut(s)	343, 479, 533, 554, 562
Eam1104I	CTCTTC	3 cut(s)	73, 299, 416
EarI	CTCTTC	3 cut(s)	73, 299, 416
EciI	GGCGGA	2 cut(s)	149, 349
Eco130I	CCWWGG	2 cut(s)	240, 746
Eco81I	CCTNAGG	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	240, 746
ErhI	CCWWGG	2 cut(s)	240, 746
FaiI	YATR	1 cut(s)	825
Fnu4HI	GCNGC	4 cut(s)	382, 397, 446, 605
FokI	GGATG	5 cut(s)	43, 63, 143, 374, 808
Fsp4HI	GCNGC	4 cut(s)	382, 397, 446, 605
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	4 cut(s)	382, 397, 446, 605
HaeIII	GGCC	2 cut(s)	384, 646
HapII	CCGG	1 cut(s)	608
HgaI	GACGC	3 cut(s)	142, 206, 451
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	2 cut(s)	198, 321
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	3 cut(s)	254, 270, 468
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	5 cut(s)	253, 259, 370, 418, 441
Hpy188III	TCNNGA	2 cut(s)	472, 553
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	7 cut(s)	200, 323, 326, 353, 422, 445, 493
HpyAV	CCTTC	4 cut(s)	286, 535, 583, 757
HpyCH4III	ACNGT	3 cut(s)	223, 375, 626
HpyCH4IV	ACGT	3 cut(s)	129, 321, 420
HpyCH4V	TGCA	2 cut(s)	86, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 484
HpyF3I	CTNAG	5 cut(s)	343, 479, 533, 554, 562
HpySE526I	ACGT	3 cut(s)	129, 321, 420
Hsp92I	GRCGYC	2 cut(s)	198, 321
HspAI	GCGC	1 cut(s)	503
KroI	GCCGGC	1 cut(s)	607
KroNI	GCCGGC	1 cut(s)	609
KspAI	GTTAAC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	189, 558, 807
LpnPI	CCDG	8 cut(s)	177, 342, 391, 446, 509, 566, 621, 827
Lsp1109I	GCAGC	3 cut(s)	383, 432, 591
MaeII	ACGT	3 cut(s)	129, 321, 420
MboII	GAAGA	9 cut(s)	33, 36, 39, 60, 286, 325, 403, 709, 745
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	1 cut(s)	637
MluI	ACGCGT	1 cut(s)	151
MlyI	GAGTC	3 cut(s)	248, 264, 477
MmeI	TCCRAC	5 cut(s)	276, 282, 327, 441, 464
MroNI	GCCGGC	1 cut(s)	607
MseI	TTAA	2 cut(s)	62, 225
MslI	CAYNNNNRTG	2 cut(s)	81, 521
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	1 cut(s)	608
MvnI	CGCG	3 cut(s)	123, 153, 503
MwoI	GCNNNNNNNGC	2 cut(s)	159, 484
NaeI	GCCGGC	1 cut(s)	609
NgoMIV	GCCGGC	1 cut(s)	607
NlaIV	GGNNCC	1 cut(s)	551
OliI	CACNNNNGTG	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	609
Pfl23II	CGTACG	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	383, 398, 447, 606
PleI	GAGTC	3 cut(s)	248, 264, 476
PpsI	GAGTC	3 cut(s)	248, 264, 476
PspLI	CGTACG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	551
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
RsaI	GTAC	2 cut(s)	575, 623
RsaNI	GTAC	2 cut(s)	574, 622
RseI	CAYNNNNRTG	2 cut(s)	81, 521
SaqAI	TTAA	2 cut(s)	62, 225
SatI	GCNGC	4 cut(s)	382, 397, 446, 605
SchI	GAGTC	3 cut(s)	248, 264, 477
SduI	GDGCHC	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	81, 521
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	637
SsiI	CCGC	9 cut(s)	109, 121, 133, 160, 360, 381, 394, 584, 707
StyI	CCWWGG	2 cut(s)	240, 746
TaaI	ACNGT	3 cut(s)	223, 375, 626
TaiI	ACGT	3 cut(s)	132, 324, 423
TaqI	TCGA	3 cut(s)	309, 336, 471
TasI	AATT	1 cut(s)	637
TauI	GCSGC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	62, 225
Tru9I	TTAA	2 cut(s)	62, 225
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	3 cut(s)	396, 445, 604
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	631
XapI	RAATTY	1 cut(s)	637
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.