FvH4_2g08020
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014330
Physical Location & Seq
Forward (+)
6914367 .. 6915215
849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08020.t1

Sequence Viewer

Length: 849 bp
ATGCCACTGCTTCACTCTCTCTCCCTCCTCCCAACTCCATCATCTTCTTCTTCTTCCTCATTGACGTCCTTAACCTCTTCTCCCCATCCAAATCCAAATCCTCAGTTCATCAAGTTCAGCACCTCCTACCGTGAAAAGCTTCGCTACCTCAAAACCCTACGCATCATCCCACCTAACACAAAACCCAACAAGCTCCCCCTCCCCGACGCTGCCGACCACCTCCTCGCCACCGTCAACTTCCTCAAGTCCAAAGGCTTCTCCGACCCCGACTTCCAAAGACTCGCCTTCCTCTCCCCCTACCTCTTCTCCCCCAACTTCGACCCTACCGACGTCACTCCCGTCTTCGACTTCTTACTCAACGAGCTCTCCGCCTCGCCGGAACAATCTTGCTGTCTCATCCTCCGCTGCCCCGACCTCCTCTTCTCCGACGTGGAGTACTGCCTCCGTCCGACGCTGCATTTCCTAAGAGAGGTGGGAGTCCAGAAACTGAGCAAGCCTACGAACCTGAACGCGCATTTGTTGAACACAAGAGTGGAGAAGCTGAATGAGAAAGTAGGGTTCCTGAGGAGCTTAGGGTTTACGTACGAGGAGGCGCTGAAGGTGTGCGAGAGGCTGCCGGCGATATTCGGGTACAGCGTGGAGGGGAATCTAAGGCCGAAATACGAGTATTTGGTGGAGGAGATGGAGAGGAGTTTGGAGGAGTTGAAGAAGTTCCCGCAGTATTTTGGGTTCAGTTTGGAGAAGAAAATAGCGCCAAGGCATTTGCATTTGAAGGAGAGGAATGTGAGCATTCCTTTGAATAGGATGTTGTTGTGGAGTGACCAGAGGTTTTATGCAAAATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

283

Amino Acids

32.5

Weight (kDa)

9.08

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 122 - 277 5.7e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 68, 333
AccII CGCG 1 cut(s) 512
AciI CCGC 3 cut(s) 369, 403, 716
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 2 cut(s) 65, 330
AfaI GTAC 3 cut(s) 437, 584, 632
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 4 cut(s) 523, 706, 772, 799
AjiI CACGTC 1 cut(s) 430
AleI CACNNNNGTG 1 cut(s) 530
AluBI AGCT 5 cut(s) 139, 193, 364, 541, 570
AluI AGCT 5 cut(s) 139, 193, 364, 541, 570
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 487
AoxI GGCC 1 cut(s) 653
ApeKI GCWGC 4 cut(s) 209, 405, 454, 613
Asp700I GAANNNNTTC 2 cut(s) 138, 710
AspLEI GCGC 3 cut(s) 514, 595, 754
AxyI CCTNAGG 1 cut(s) 563
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 4 cut(s) 196, 392, 441, 600
BccI CCATC 3 cut(s) 46, 93, 676
BcoDI GTCTC 1 cut(s) 398
BfoI RGCGCY 2 cut(s) 596, 755
BisI GCNGC 4 cut(s) 210, 406, 455, 614
BlsI GCNGC 4 cut(s) 211, 407, 456, 615
BmcAI AGTACT 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 560
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 582
BsaHI GRCGYC 2 cut(s) 65, 330
BsaJI CCNNGG 1 cut(s) 755
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 64, 94, 290, 320, 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 616
Bse21I CCTNAGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 755
BseGI GGATG 4 cut(s) 85, 165, 396, 810
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 3 cut(s) 116, 479, 554
BseRI GAGGAG 8 cut(s) 17, 212, 407, 580, 602, 692, 703, 713
BseXI GCAGC 4 cut(s) 196, 392, 441, 600
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 377, 617
BsiWI CGTACG 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 366
BspACI CCGC 3 cut(s) 369, 403, 716
BspANI GGCC 1 cut(s) 655
BspCNI CTCAG 3 cut(s) 115, 480, 555
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 1 cut(s) 755
BssNI GRCGYC 2 cut(s) 65, 330
BssT1I CCWWGG 1 cut(s) 755
Bst4CI ACNGT 2 cut(s) 131, 232
Bst6I CTCTTC 3 cut(s) 82, 308, 425
BstACI GRCGYC 2 cut(s) 65, 330
BstBAI YACGTR 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 494, 618
BstDEI CTNAG 6 cut(s) 102, 464, 488, 563, 571, 650
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 4 cut(s) 85, 165, 396, 810
BstFNI CGCG 1 cut(s) 512
BstH2I RGCGCY 2 cut(s) 596, 755
BstHHI GCGC 3 cut(s) 514, 595, 754
BstMAI GTCTC 1 cut(s) 398
BstSNI TACGTA 1 cut(s) 582
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 4 cut(s) 196, 392, 441, 600
BstV2I GAAGAC 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 563
BsuRI GGCC 1 cut(s) 655
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 4 cut(s) 85, 165, 396, 810
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 494, 618
CaiI CAGNNNCTG 1 cut(s) 487
CfoI GCGC 3 cut(s) 514, 595, 754
Cfr10I RCCGGY 1 cut(s) 616
CseI GACGC 2 cut(s) 215, 460
Csp6I GTAC 3 cut(s) 436, 583, 631
CviJI RGCY 9 cut(s) 139, 193, 255, 364, 496, 541, 570, 613, 655
CviKI_1 RGCY 9 cut(s) 139, 193, 255, 364, 496, 541, 570, 613, 655
CviQI GTAC 3 cut(s) 436, 583, 631
DdeI CTNAG 6 cut(s) 102, 464, 488, 563, 571, 650
Eam1104I CTCTTC 3 cut(s) 82, 308, 425
EarI CTCTTC 3 cut(s) 82, 308, 425
EciI GGCGGA 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 364
Eco105I TACGTA 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 755
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 755
FaiI YATR 1 cut(s) 834
FauI CCCGC 1 cut(s) 723
Fnu4HI GCNGC 4 cut(s) 210, 406, 455, 614
FokI GGATG 4 cut(s) 72, 152, 383, 817
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 210, 406, 455, 614
GlaI GCGC 3 cut(s) 513, 594, 753
GluI GCNGC 4 cut(s) 210, 406, 455, 614
HaeII RGCGCY 2 cut(s) 596, 755
HaeIII GGCC 1 cut(s) 655
HapII CCGG 2 cut(s) 377, 617
HgaI GACGC 2 cut(s) 215, 460
HhaI GCGC 3 cut(s) 514, 595, 754
Hin1I GRCGYC 2 cut(s) 65, 330
Hin6I GCGC 3 cut(s) 512, 593, 752
HinP1I GCGC 3 cut(s) 512, 593, 752
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 279, 477, 646
HpaII CCGG 2 cut(s) 377, 617
Hpy166II GTNNAC 2 cut(s) 235, 579
Hpy188I TCNGA 3 cut(s) 262, 427, 450
Hpy188III TCNNGA 2 cut(s) 481, 562
Hpy8I GTNNAC 2 cut(s) 235, 579
Hpy99I CGWCG 4 cut(s) 209, 332, 431, 454
HpyAV CCTTC 3 cut(s) 295, 592, 766
HpyCH4III ACNGT 2 cut(s) 131, 232
HpyCH4IV ACGT 4 cut(s) 65, 330, 429, 581
HpyCH4V TGCA 3 cut(s) 457, 766, 836
HpyF3I CTNAG 6 cut(s) 102, 464, 488, 563, 571, 650
HpySE526I ACGT 4 cut(s) 65, 330, 429, 581
Hsp92I GRCGYC 2 cut(s) 65, 330
HspAI GCGC 3 cut(s) 512, 593, 752
KroI GCCGGC 1 cut(s) 616
KroNI GCCGGC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 198, 567
LpnPI CCDG 6 cut(s) 390, 494, 518, 575, 630, 836
Lsp1109I GCAGC 4 cut(s) 196, 392, 441, 600
LweI GCATC 1 cut(s) 171
MaeII ACGT 4 cut(s) 65, 330, 429, 581
MaeIII GTNAC 2 cut(s) 331, 818
MhlI GDGCHC 1 cut(s) 366
MlyI GAGTC 2 cut(s) 273, 486
MmeI TCCRAC 3 cut(s) 285, 450, 473
MroNI GCCGGC 1 cut(s) 616
MroXI GAANNNNTTC 2 cut(s) 138, 710
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 2 cut(s) 377, 617
Mva1269I GAATGC 1 cut(s) 789
MvnI CGCG 1 cut(s) 512
NaeI GCCGGC 1 cut(s) 618
NgoMIV GCCGGC 1 cut(s) 616
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 2 cut(s) 331, 818
OliI CACNNNNGTG 1 cut(s) 530
PcsI WCGNNNNNNNCGW 3 cut(s) 324, 336, 633
PctI GAATGC 1 cut(s) 789
PdiI GCCGGC 1 cut(s) 618
PdmI GAANNNNTTC 2 cut(s) 138, 710
PfeI GAWTC 1 cut(s) 646
Pfl23II CGTACG 1 cut(s) 582
PkrI GCNGC 4 cut(s) 211, 407, 456, 615
PleI GAGTC 2 cut(s) 273, 485
PpsI GAGTC 2 cut(s) 273, 485
Ppu21I YACGTR 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 366
PspLI CGTACG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 560
PsrI GAACNNNNNNTAC 2 cut(s) 713, 745
PstNI CAGNNNCTG 1 cut(s) 487
RsaI GTAC 3 cut(s) 437, 584, 632
RsaNI GTAC 3 cut(s) 436, 583, 631
RseI CAYNNNNRTG 1 cut(s) 530
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 210, 406, 455, 614
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 2 cut(s) 273, 486
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SnaBI TACGTA 1 cut(s) 582
SsiI CCGC 3 cut(s) 369, 403, 716
SstI GAGCTC 1 cut(s) 366
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 2 cut(s) 131, 232
TaiI ACGT 4 cut(s) 68, 333, 432, 584
TaqI TCGA 2 cut(s) 318, 345
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 331, 818
TseI GCWGC 4 cut(s) 209, 405, 454, 613
Tsp45I GTSAC 2 cut(s) 331, 818
TspDTI ATGAA 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 467
XmnI GAANNNNTTC 2 cut(s) 138, 710
ZraI GACGTC 2 cut(s) 66, 331
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.