Rroxscaffold_177G00434400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
OG0014330
Physical Location & Seq
Reverse (-)
370824 .. 371663
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434400.1

Sequence Viewer

Length: 840 bp
ATGCCACTACTTCACTCTCTCTCTCTCCTCCCAACTCCATCATCTTCTTCCTCATTATCCTTGGTCTCTTCTCCCCATCCAAATGCAAACCCTCACTTCATCAAGTTCCGAACCTCCTACCGCGAAAACGTCCGCTACCTCAAAACCCTACGCGTCATCCGCCCTGACACAAAACCCAACAAGCTTCCCCTCCCCGACGCCACCGACCACCTCCTCGCCACCGTTAACTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCAAAGACTCGCCTTCCTCTCCCCCAACCTCTTCTCCTCCAACTTCGACCCCACCGACGTCGCCCCTGTCTTCGACTTCTTAGCCGACGACCTCTCCGCCTCGCCCGAACAGTCCTGCGGCCTCATCCTCCGCTGCCCTGACCTCCTCTTCTCCGACGTCGAGTTCTGCCTCCGTCCGACGCTGCATTTTCTCAAACAGGTGGGAGTCGAGAAGCTGAGCACGCCGACGAACCTAAACGCGCATTTGCTGAACACAAGGGTGGAGAAGCTGAGAGGGAAGGTAAGGTTCCTGAGGAGCTTAGGGTTTTCGTACGAGGAGGCGGTGAAGGTGTGCGAGAGGCTGCCGGCGATATTCGGGTACAGTGTGGAGGGGAATTTGAGGCCAAAATACGAGTATTTGGTGGAGGAGATGGAGAGGAGTGTAGAGGAGTTGAAGAAGTTTCCTCAGTATTTTGGGTTCAGCTTGGAGAAGAAAATAGTGCCAAGGCATTTACATTTGAAGGAGAGGAATGTGAGAATTGCTTTGAATAGGATGTTGTTGTGGAGTGACCAGAGGTTTTATGCAAAATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

279

Amino Acids

32.14

Weight (kDa)

9.37

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 128 - 274 3.2e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 324, 423
AccII CGCG 3 cut(s) 123, 153, 503
AciI CCGC 7 cut(s) 121, 133, 160, 360, 381, 394, 584
AcsI RAATTY 1 cut(s) 637
AcyI GRCGYC 3 cut(s) 198, 321, 420
AfaI GTAC 2 cut(s) 575, 623
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 3 cut(s) 697, 763, 790
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 5 cut(s) 184, 478, 532, 561, 726
AluI AGCT 5 cut(s) 184, 478, 532, 561, 726
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 70
AoxI GGCC 2 cut(s) 382, 644
ApeKI GCWGC 3 cut(s) 396, 445, 604
ApoI RAATTY 1 cut(s) 637
AspLEI GCGC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 598
AxyI CCTNAGG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 383, 432, 591
BccI CCATC 3 cut(s) 46, 84, 667
BcoDI GTCTC 1 cut(s) 70
BisI GCNGC 4 cut(s) 382, 397, 446, 605
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 4 cut(s) 383, 398, 447, 606
BmiI GGNNCC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 562
Bpu1102I GCTNAGC 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 218
BsaHI GRCGYC 3 cut(s) 198, 321, 420
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 60, 240, 746
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 341, 371
Bse118I RCCGGY 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 554
BseDI CCNNGG 3 cut(s) 60, 240, 746
BseGI GGATG 4 cut(s) 76, 156, 387, 801
BseMII CTCAG 4 cut(s) 470, 524, 545, 722
BseRI GAGGAG 9 cut(s) 17, 203, 289, 398, 571, 593, 683, 694, 704
BseXI GCAGC 3 cut(s) 383, 432, 591
Bsh1236I CGCG 3 cut(s) 123, 153, 503
BshFI GGCC 2 cut(s) 384, 646
BsiHKAI GWGCWC 1 cut(s) 485
BsiSI CCGG 1 cut(s) 608
BsiWI CGTACG 1 cut(s) 573
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 2 cut(s) 384, 646
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 485
Bsp1720I GCTNAGC 1 cut(s) 479
BspACI CCGC 7 cut(s) 121, 133, 160, 360, 381, 394, 584
BspANI GGCC 2 cut(s) 384, 646
BspCNI CTCAG 4 cut(s) 471, 525, 546, 721
BspFNI CGCG 3 cut(s) 123, 153, 503
BspLI GGNNCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 607
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 60, 240, 746
BssNI GRCGYC 3 cut(s) 198, 321, 420
BssT1I CCWWGG 3 cut(s) 60, 240, 746
Bst4CI ACNGT 3 cut(s) 223, 375, 626
Bst6I CTCTTC 3 cut(s) 73, 299, 416
BstACI GRCGYC 3 cut(s) 198, 321, 420
BstC8I GCNNGC 2 cut(s) 485, 609
BstDEI CTNAG 6 cut(s) 343, 479, 533, 554, 562, 708
BstF5I GGATG 4 cut(s) 76, 156, 387, 801
BstFNI CGCG 3 cut(s) 123, 153, 503
BstHHI GCGC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 159, 484
BstUI CGCG 3 cut(s) 123, 153, 503
BstV1I GCAGC 3 cut(s) 383, 432, 591
BstV2I GAAGAC 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 554
BsuRI GGCC 2 cut(s) 384, 646
BtsCI GGATG 4 cut(s) 76, 156, 387, 801
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 485, 609
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 607
CseI GACGC 3 cut(s) 142, 206, 451
Csp6I GTAC 2 cut(s) 574, 622
CviQI GTAC 2 cut(s) 574, 622
DdeI CTNAG 6 cut(s) 343, 479, 533, 554, 562, 708
Eam1104I CTCTTC 3 cut(s) 73, 299, 416
EarI CTCTTC 3 cut(s) 73, 299, 416
EciI GGCGGA 2 cut(s) 149, 349
Eco130I CCWWGG 3 cut(s) 60, 240, 746
Eco31I GGTCTC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 554
EcoT14I CCWWGG 3 cut(s) 60, 240, 746
ErhI CCWWGG 3 cut(s) 60, 240, 746
FaiI YATR 1 cut(s) 825
Fnu4HI GCNGC 4 cut(s) 382, 397, 446, 605
FokI GGATG 4 cut(s) 63, 143, 374, 808
Fsp4HI GCNGC 4 cut(s) 382, 397, 446, 605
GlaI GCGC 1 cut(s) 504
GluI GCNGC 4 cut(s) 382, 397, 446, 605
HaeIII GGCC 2 cut(s) 384, 646
HapII CCGG 1 cut(s) 608
HgaI GACGC 3 cut(s) 142, 206, 451
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 3 cut(s) 198, 321, 420
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 3 cut(s) 254, 270, 468
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 608
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 5 cut(s) 110, 253, 259, 418, 441
Hpy188III TCNNGA 2 cut(s) 472, 553
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 8 cut(s) 200, 323, 326, 353, 422, 425, 445, 493
HpyAV CCTTC 4 cut(s) 286, 535, 583, 757
HpyCH4III ACNGT 3 cut(s) 223, 375, 626
HpyCH4IV ACGT 3 cut(s) 129, 321, 420
HpyCH4V TGCA 3 cut(s) 86, 448, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 484
HpyF3I CTNAG 6 cut(s) 343, 479, 533, 554, 562, 708
HpySE526I ACGT 3 cut(s) 129, 321, 420
Hsp92I GRCGYC 3 cut(s) 198, 321, 420
HspAI GCGC 1 cut(s) 503
KroI GCCGGC 1 cut(s) 607
KroNI GCCGGC 1 cut(s) 609
KspAI GTTAAC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 8 cut(s) 177, 342, 391, 414, 446, 566, 621, 827
Lsp1109I GCAGC 3 cut(s) 383, 432, 591
MaeII ACGT 3 cut(s) 129, 321, 420
MaeIII GTNAC 1 cut(s) 809
MboII GAAGA 8 cut(s) 36, 39, 60, 286, 325, 403, 709, 745
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 2 cut(s) 637, 780
MluI ACGCGT 1 cut(s) 151
MlyI GAGTC 3 cut(s) 248, 264, 477
MmeI TCCRAC 5 cut(s) 276, 282, 327, 441, 464
MroNI GCCGGC 1 cut(s) 607
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 81, 521
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 1 cut(s) 608
MvnI CGCG 3 cut(s) 123, 153, 503
MwoI GCNNNNNNNGC 2 cut(s) 159, 484
NaeI GCCGGC 1 cut(s) 609
NgoMIV GCCGGC 1 cut(s) 607
NlaIV GGNNCC 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 809
OliI CACNNNNGTG 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 609
Pfl23II CGTACG 1 cut(s) 573
PkrI GCNGC 4 cut(s) 383, 398, 447, 606
PleI GAGTC 3 cut(s) 248, 264, 476
PpsI GAGTC 3 cut(s) 248, 264, 476
PspLI CGTACG 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 551
PsrI GAACNNNNNNTAC 2 cut(s) 704, 736
RsaI GTAC 2 cut(s) 575, 623
RsaNI GTAC 2 cut(s) 574, 622
RseI CAYNNNNRTG 2 cut(s) 81, 521
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 4 cut(s) 382, 397, 446, 605
SchI GAGTC 3 cut(s) 248, 264, 477
SduI GDGCHC 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 81, 521
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 2 cut(s) 637, 780
SsiI CCGC 7 cut(s) 121, 133, 160, 360, 381, 394, 584
StyI CCWWGG 3 cut(s) 60, 240, 746
TaaI ACNGT 3 cut(s) 223, 375, 626
TaiI ACGT 3 cut(s) 132, 324, 423
TaqI TCGA 4 cut(s) 309, 336, 423, 471
TasI AATT 2 cut(s) 637, 780
TauI GCSGC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 3 cut(s) 396, 445, 604
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 631
XapI RAATTY 1 cut(s) 637
ZraI GACGTC 2 cut(s) 322, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.