Rorug05G0598000
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014330
Physical Location & Seq
Forward (+)
79575794 .. 79579992
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0598000.1

Sequence Viewer

Length: 903 bp
ATGGAAGGGAATTCGGGGGGCGTAGGTGGAGGAGGAGGAGGAGCAATAGCAGGAGGTGGCGGTGGCGGTGGCGGTGGAGGTAATGACGTGGAGCTGCTTTGTAAGACGCTGCAGGTTGAGCACAAGCTTTTCTACTTCGATCTCAAAGAGAACCCTCGCGGTCGTTATCTCAAAATTTCTGAAAAGACTTCAGCCACCAGGTCCACTATCATCGTTCCCTTCTCCGGCATCTCGTGGTTCCTCGATCTCTTCAATTACTATGTCAATTCGGACGATCAGGATGTCTTCAGCAAGGAACTGCAGCTCGACACAAAGGTCTTCTACTTTGACATTGGCGAGAACCGCAGGGGCCGCTTCTTGAAGGTATCCGAAGCTTCTGTTAGTAGAAATCGAAGTACTATCATTGTTCCTGCAGGGAGCACCCGGGATGAAGGGTGGGCAGCATTTAGGAACATTTTGGCTGAGATCAATGAAGCATCAAGGCTTTTCATACTGCCTAATCAGCAGCAAAGTTCTGAATCTTCAGAGCGACTTGTTGGGCTTTCAGACGATGTAGGTGCTGGCTTCATATCTGGCCACAGTAGCCAAACTGTGCCAACTTCTGAACTGAATATTGACAGATCCACAGACTTGCCGGCTCAAGATGAAATTGGTAACATGGGGGTTTCTAAAGTGATTAGAGCTGATCAAAAGAGATTCTTCTTTGATCTTGGAAACAATAACAGGGGCCATTTTCTAAGAATATCGGAGGTTGCAGGCTCTGATAGGTCATCCATAATTCTCCCACTGTCAGGGCTCAAACAGTTCCATGAAATAGTGGGTCATTTTGTGGAGATAACCAAAGATCGAATTGAAGGAATGACAGGTGCAAATGTTCGCACAGTGGATCCTCCTCAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

300

Amino Acids

32.66

Weight (kDa)

5.64

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PurA PF04845 32 - 158 1.8e-20 PurA ssDNA and RNA-binding protein
PurA PF04845 215 - 277 4.2e-12 PurA ssDNA and RNA-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 103
AccII CGCG 1 cut(s) 159
AciI CCGC 6 cut(s) 60, 66, 72, 159, 343, 352
AclWI GGATC 3 cut(s) 615, 881, 894
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 2 cut(s) 10, 174
AcuI CTGAAG 3 cut(s) 174, 271, 507
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 2 cut(s) 224, 791
AgsI TTSAA 3 cut(s) 253, 361, 854
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 5 cut(s) 94, 127, 304, 374, 683
AluI AGCT 5 cut(s) 94, 127, 304, 374, 683
Alw21I GWGCWC 2 cut(s) 123, 422
AlwI GGATC 3 cut(s) 615, 881, 894
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 3 cut(s) 349, 574, 727
ApeKI GCWGC 5 cut(s) 94, 109, 301, 440, 505
ApoI RAATTY 2 cut(s) 10, 174
AspS9I GGNCC 3 cut(s) 201, 349, 727
AsuC2I CCSGG 2 cut(s) 424, 425
AvaI CYCGRG 1 cut(s) 423
AvaII GGWCC 1 cut(s) 201
BalI TGGCCA 1 cut(s) 576
BamHI GGATCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 277, 310
Bbv12I GWGCWC 2 cut(s) 123, 422
BbvI GCAGC 5 cut(s) 81, 96, 313, 452, 517
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 1 cut(s) 199
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 2 cut(s) 424, 425
BfmI CTRYAG 3 cut(s) 110, 299, 411
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 6 cut(s) 95, 110, 302, 352, 441, 506
BlsI GCNGC 6 cut(s) 96, 111, 303, 353, 442, 507
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 3 cut(s) 199, 424, 425
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 423
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 201, 349, 727
BmiI GGNNCC 4 cut(s) 239, 350, 728, 888
BmrFI CCNGG 3 cut(s) 199, 424, 425
BmsI GCATC 2 cut(s) 237, 485
BpiI GAAGAC 2 cut(s) 277, 310
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 2 cut(s) 424, 425
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 791
Bse118I RCCGGY 1 cut(s) 634
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 3 cut(s) 286, 433, 770
BseLI CCNNNNNNNGG 2 cut(s) 224, 791
BseMII CTCAG 1 cut(s) 453
BseRI GAGGAG 5 cut(s) 45, 48, 51, 54, 882
BseXI GCAGC 5 cut(s) 81, 96, 313, 452, 517
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 3 cut(s) 351, 576, 729
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 123, 422
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 3 cut(s) 225, 424, 635
BslI CCNNNNNNNGG 2 cut(s) 224, 791
BsnI GGCC 3 cut(s) 351, 576, 729
BsoBI CYCGRG 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 123, 422, 798
Bsp143I GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
BspACI CCGC 6 cut(s) 60, 66, 72, 159, 343, 352
BspANI GGCC 3 cut(s) 351, 576, 729
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 239, 350, 728, 888
BspMAI CTGCAG 3 cut(s) 114, 303, 415
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 3 cut(s) 615, 881, 894
BsrFI RCCGGY 1 cut(s) 634
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 5 cut(s) 581, 592, 789, 804, 883
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 562, 636, 757
BstDEI CTNAG 3 cut(s) 462, 737, 894
BstF5I GGATG 3 cut(s) 286, 433, 770
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 9 cut(s) 142, 247, 277, 468, 623, 688, 709, 847, 889
BstMBI GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 5 cut(s) 118, 342, 351, 502, 582
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 197, 422, 423
BstSFI CTRYAG 3 cut(s) 110, 299, 411
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 81, 96, 313, 452, 517
BstV2I GAAGAC 2 cut(s) 277, 310
BstX2I RGATCY 2 cut(s) 620, 886
BstYI RGATCY 2 cut(s) 620, 886
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 3 cut(s) 351, 576, 729
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 3 cut(s) 286, 433, 770
BtsIMutI CAGTG 2 cut(s) 785, 888
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 562, 636, 757
CaiI CAGNNNCTG 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 3 cut(s) 201, 349, 727
Cfr9I CCCGGG 1 cut(s) 423
CseI GACGC 1 cut(s) 115
CsiI ACCWGGT 1 cut(s) 197
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 658, 809
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 3 cut(s) 462, 737, 894
DpnI GATC 9 cut(s) 141, 246, 276, 467, 622, 687, 708, 846, 888
DpnII GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 3 cut(s) 174, 271, 507
Eco88I CYCGRG 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 798
FaeI CATG 2 cut(s) 661, 812
FaiI YATR 6 cut(s) 261, 491, 569, 659, 776, 810
FalI AAGNNNNNCTT 2 cut(s) 683, 715
FatI CATG 2 cut(s) 657, 808
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 6 cut(s) 95, 110, 302, 352, 441, 506
FokI GGATG 3 cut(s) 293, 440, 757
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 6 cut(s) 95, 110, 302, 352, 441, 506
GluI GCNGC 6 cut(s) 95, 110, 302, 352, 441, 506
HaeIII GGCC 3 cut(s) 351, 576, 729
HapII CCGG 3 cut(s) 225, 424, 635
HgaI GACGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 661, 812
HindIII AAGCTT 2 cut(s) 125, 372
HinfI GANTC 2 cut(s) 518, 696
HpaII CCGG 3 cut(s) 225, 424, 635
Hpy166II GTNNAC 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 278, 358, 641
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 4 cut(s) 229, 355, 425, 848
HpyCH4III ACNGT 5 cut(s) 581, 592, 789, 804, 883
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 5 cut(s) 112, 301, 413, 755, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 342, 351, 502, 582
HpyF3I CTNAG 3 cut(s) 462, 737, 894
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 661, 812
KroI GCCGGC 1 cut(s) 634
KroNI GCCGGC 1 cut(s) 636
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
LmnI GCTCC 3 cut(s) 41, 91, 417
Lsp1109I GCAGC 5 cut(s) 81, 96, 313, 452, 517
LweI GCATC 2 cut(s) 237, 485
MabI ACCWGGT 1 cut(s) 197
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 653
MalI GATC 9 cut(s) 141, 246, 276, 467, 622, 687, 708, 846, 888
MboI GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
MboII GAAGA 5 cut(s) 241, 277, 310, 513, 691
MflI RGATCY 2 cut(s) 620, 886
MhlI GDGCHC 3 cut(s) 123, 422, 798
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 7 cut(s) 10, 174, 253, 265, 648, 777, 849
MluNI TGGCCA 1 cut(s) 576
Mox20I TGGCCA 1 cut(s) 576
MroNI GCCGGC 1 cut(s) 634
MscI TGGCCA 1 cut(s) 576
Msp20I TGGCCA 1 cut(s) 576
MspI CCGG 3 cut(s) 225, 424, 635
MspR9I CCNGG 3 cut(s) 199, 424, 425
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 5 cut(s) 118, 342, 351, 502, 582
NaeI GCCGGC 1 cut(s) 636
NciI CCSGG 2 cut(s) 424, 425
NdeII GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
NgoMIV GCCGGC 1 cut(s) 634
NlaIII CATG 2 cut(s) 661, 812
NlaIV GGNNCC 4 cut(s) 239, 350, 728, 888
PdiI GCCGGC 1 cut(s) 636
PfeI GAWTC 2 cut(s) 518, 696
PkrI GCNGC 6 cut(s) 96, 111, 303, 353, 442, 507
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 4 cut(s) 239, 350, 728, 888
PspPI GGNCC 3 cut(s) 201, 349, 727
PstI CTGCAG 3 cut(s) 114, 303, 415
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 2 cut(s) 620, 886
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SatI GCNGC 6 cut(s) 95, 110, 302, 352, 441, 506
Sau3AI GATC 9 cut(s) 139, 244, 274, 465, 620, 685, 706, 844, 886
Sau96I GGNCC 3 cut(s) 201, 349, 727
SbfI CCTGCAGG 1 cut(s) 415
ScaI AGTACT 1 cut(s) 397
ScrFI CCNGG 3 cut(s) 199, 424, 425
SdaI CCTGCAGG 1 cut(s) 415
SduI GDGCHC 3 cut(s) 123, 422, 798
SexAI ACCWGGT 1 cut(s) 197
SfaNI GCATC 2 cut(s) 237, 485
SfcI CTRYAG 3 cut(s) 110, 299, 411
SinI GGWCC 1 cut(s) 201
SmaI CCCGGG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse8387I CCTGCAGG 1 cut(s) 415
Sse9I AATT 7 cut(s) 10, 174, 253, 265, 648, 777, 849
SsiI CCGC 6 cut(s) 60, 66, 72, 159, 343, 352
SspI AATATT 1 cut(s) 613
StyD4I CCNGG 3 cut(s) 197, 422, 423
TaaI ACNGT 5 cut(s) 581, 592, 789, 804, 883
TaiI ACGT 1 cut(s) 90
TaqI TCGA 5 cut(s) 138, 243, 306, 391, 847
TasI AATT 7 cut(s) 10, 174, 253, 265, 648, 777, 849
TatI WGTACW 1 cut(s) 395
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 2 cut(s) 518, 696
TscAI CASTG 2 cut(s) 792, 888
TseI GCWGC 5 cut(s) 94, 109, 301, 440, 505
TspDTI ATGAA 6 cut(s) 444, 478, 486, 556, 660, 825
TspMI CCCGGG 1 cut(s) 423
TspRI CASTG 2 cut(s) 792, 888
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 2 cut(s) 10, 174
XmaI CCCGGG 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.