RchiOBHm_Chr6g0262541
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014330
Physical Location & Seq
Forward (+)
17290398 .. 17291336
939 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23544

Sequence Viewer

Length: 786 bp
ATGCCACTACTTCACTCTCTCTCCCTCCTCCCAACTCCATCATCTTCTTCCTCATCATCCTTAGTCTCTTCTCCCCATCCAAACCCTCACTTCATCAAGTTCCGCACCTCCTACCGCGAAAACATCCGCTACCTCAAAACCCTACGCGTCATCCGCCCTGACACAAAACCCAACAAGCTCCCCCTCCCCGACGCCACCGACCACCTCCTTGCCACCACTCGCCTTCCTCTCCCCAACCTCTTCTCCTCCAACTTCGACCCCACCGACGTCGCCCCTGTCTTCGACTTCTTAGCCGACGACCTCTCCGCCTCGCCCGAACAGTCCTGCGGCCTCATCCTCCGCTGCCCTGACCTCCTCTTCTCCGACGTCGAGTTCTGCCTCCGACCGACGCTGCATTTTCTCAAACAGGTGGGAGTCGAGAAGCTGAGCACGCCGACGAACCTGAACGCGCATTTGTTGAACACAAGGGTGGAGAAGCTGAGAGGGAAGGTAAGGTTCCTGAGGAGCTTAGGGTTTTCGTACGAGGAGGCGGTGAAGGTGTGCGAGAGGCTGCCGGCGATATTTGGGTACAGTGTGGAGGGGAATTTGAAGCCAAAATACGAGTATTTGGTGGAGGAGATGGAGAGAAATGTGGAGGAGTTGAAGAAGTTTCCGCAGTATTTTGGGTTCAGCTTGGAGAAGAAAATAGTGCCAAGGCATTTACATTTGAAGGAGAGGAATGTGAGGATTGCTTTGAATAGGATGTTGTTGTGGAGTGACCAGAGGTTTTATGCAAAATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

261

Amino Acids

30.14

Weight (kDa)

9.39

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 104 - 256 2.2e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 270, 369
AccII CGCG 3 cut(s) 117, 147, 449
AciI CCGC 9 cut(s) 103, 115, 127, 154, 306, 327, 340, 530, 653
AcsI RAATTY 1 cut(s) 583
AcyI GRCGYC 3 cut(s) 192, 267, 366
AfaI GTAC 2 cut(s) 521, 569
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 5 cut(s) 460, 589, 643, 709, 736
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 5 cut(s) 178, 424, 478, 507, 672
AluI AGCT 5 cut(s) 178, 424, 478, 507, 672
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 70
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 3 cut(s) 342, 391, 550
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 544
AxyI CCTNAGG 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 581, 613
BbsI GAAGAC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 329, 378, 537
BccI CCATC 3 cut(s) 46, 84, 613
BcoDI GTCTC 1 cut(s) 70
BisI GCNGC 4 cut(s) 328, 343, 392, 551
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 4 cut(s) 329, 344, 393, 552
BmiI GGNNCC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 508
Bpu1102I GCTNAGC 1 cut(s) 425
BsaHI GRCGYC 3 cut(s) 192, 267, 366
BsaJI CCNNGG 1 cut(s) 692
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 227, 257, 287, 317
Bse118I RCCGGY 1 cut(s) 553
Bse21I CCTNAGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 6 cut(s) 56, 76, 123, 150, 333, 747
BseMII CTCAG 3 cut(s) 416, 470, 491
BseRI GAGGAG 7 cut(s) 17, 235, 344, 517, 539, 629, 650
BseXI GCAGC 3 cut(s) 329, 378, 537
Bsh1236I CGCG 3 cut(s) 117, 147, 449
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 330
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 554
BsiWI CGTACG 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 431
Bsp1720I GCTNAGC 1 cut(s) 425
BspACI CCGC 9 cut(s) 103, 115, 127, 154, 306, 327, 340, 530, 653
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 417, 471, 492
BspFNI CGCG 3 cut(s) 117, 147, 449
BspLI GGNNCC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 692
BssNI GRCGYC 3 cut(s) 192, 267, 366
BssT1I CCWWGG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 321, 572
Bst6I CTCTTC 3 cut(s) 73, 245, 362
BstACI GRCGYC 3 cut(s) 192, 267, 366
BstC8I GCNNGC 2 cut(s) 431, 555
BstDEI CTNAG 6 cut(s) 61, 289, 425, 479, 500, 508
BstF5I GGATG 6 cut(s) 56, 76, 123, 150, 333, 747
BstFNI CGCG 3 cut(s) 117, 147, 449
BstHHI GCGC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 153, 430
BstUI CGCG 3 cut(s) 117, 147, 449
BstV1I GCAGC 3 cut(s) 329, 378, 537
BstV2I GAAGAC 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 500
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 6 cut(s) 56, 76, 123, 150, 333, 747
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 431, 555
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 553
CseI GACGC 3 cut(s) 136, 200, 397
Csp6I GTAC 2 cut(s) 520, 568
CviJI RGCY 9 cut(s) 178, 293, 330, 424, 478, 507, 550, 592, 672
CviKI_1 RGCY 9 cut(s) 178, 293, 330, 424, 478, 507, 550, 592, 672
CviQI GTAC 2 cut(s) 520, 568
DdeI CTNAG 6 cut(s) 61, 289, 425, 479, 500, 508
Eam1104I CTCTTC 3 cut(s) 73, 245, 362
EarI CTCTTC 3 cut(s) 73, 245, 362
EciI GGCGGA 2 cut(s) 143, 295
Eco130I CCWWGG 1 cut(s) 692
Eco81I CCTNAGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 692
FaiI YATR 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 328, 343, 392, 551
FokI GGATG 6 cut(s) 43, 63, 110, 137, 320, 754
Fsp4HI GCNGC 4 cut(s) 328, 343, 392, 551
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 328, 343, 392, 551
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 554
HgaI GACGC 3 cut(s) 136, 200, 397
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 3 cut(s) 192, 267, 366
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 1 cut(s) 414
HpaII CCGG 1 cut(s) 554
HphI GGTGA 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 364, 383
Hpy188III TCNNGA 2 cut(s) 418, 499
Hpy99I CGWCG 8 cut(s) 194, 269, 272, 299, 368, 371, 391, 439
HpyAV CCTTC 4 cut(s) 233, 481, 529, 703
HpyCH4III ACNGT 2 cut(s) 321, 572
HpyCH4IV ACGT 2 cut(s) 267, 366
HpyCH4V TGCA 2 cut(s) 394, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 430
HpyF3I CTNAG 6 cut(s) 61, 289, 425, 479, 500, 508
HpySE526I ACGT 2 cut(s) 267, 366
Hsp92I GRCGYC 3 cut(s) 192, 267, 366
HspAI GCGC 1 cut(s) 449
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
LmnI GCTCC 2 cut(s) 183, 504
LpnPI CCDG 9 cut(s) 171, 288, 337, 360, 392, 455, 512, 567, 773
Lsp1109I GCAGC 3 cut(s) 329, 378, 537
MaeII ACGT 2 cut(s) 267, 366
MaeIII GTNAC 1 cut(s) 755
MboII GAAGA 8 cut(s) 36, 39, 60, 232, 271, 349, 655, 691
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 1 cut(s) 583
MluI ACGCGT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 3 cut(s) 273, 387, 406
MroNI GCCGGC 1 cut(s) 553
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 554
MvnI CGCG 3 cut(s) 117, 147, 449
MwoI GCNNNNNNNGC 2 cut(s) 153, 430
NaeI GCCGGC 1 cut(s) 555
NgoMIV GCCGGC 1 cut(s) 553
NlaIV GGNNCC 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 755
OliI CACNNNNGTG 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 555
Pfl23II CGTACG 1 cut(s) 519
PkrI GCNGC 4 cut(s) 329, 344, 393, 552
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PspLI CGTACG 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 497
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
RsaI GTAC 2 cut(s) 521, 569
RsaNI GTAC 2 cut(s) 520, 568
RseI CAYNNNNRTG 1 cut(s) 467
SatI GCNGC 4 cut(s) 328, 343, 392, 551
SchI GAGTC 1 cut(s) 423
SduI GDGCHC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 1 cut(s) 583
SsiI CCGC 9 cut(s) 103, 115, 127, 154, 306, 327, 340, 530, 653
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 2 cut(s) 321, 572
TaiI ACGT 2 cut(s) 270, 369
TaqI TCGA 4 cut(s) 255, 282, 369, 417
TaqII GACCGA 1 cut(s) 400
TasI AATT 1 cut(s) 583
TauI GCSGC 1 cut(s) 330
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 3 cut(s) 342, 391, 550
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 1 cut(s) 82
TspRI CASTG 1 cut(s) 577
XapI RAATTY 1 cut(s) 583
ZraI GACGTC 2 cut(s) 268, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.