Rh6CG111400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014330
Physical Location & Seq
Forward (+)
12773063 .. 12774188
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG111400.1

Sequence Viewer

Length: 834 bp
ATGCCACTACTTCACTCTCTCTCCCTCCTCCCAACTCCATCATCTTCTTCCTCATCATCCTTAGTCTCTTCTCCCCTTCCAAACCCTCACTTCATCAAGTTCCGCACCTCCTACCGCGAAAACATCCGCTACCTCAAAACCCTACGCGTCATCCGCCCTGACACAAAACCCAACAAGCTCCCCCTCCCCGACGCCACCGACCACCTCCTTGCCACCGTTAACTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCAAAGACTCGCCTTCCTCTCCCCCAACCTCTTCTCCTCCAACTTCGACCCCACCGACGTCGCCCCTGTCTTCGACTTCTTAGCCGACGACCTCTCCGCCTCGCCCGAACAGTCCTGCGGCCTCATCCTCCGCTGCCCTGACCTCCTCTTCTCCGACGTCGAGTTCTGCCTCCGACCGACGCTGCATTTTCTCAAACAGGTGGGAGTCGAGAAGCTGAGCACGCCGACGAACCTGAACGCGCATTTGTTGAACACAAGGGTGGAGAAGCTGAGAGGGAAGGTAAGGTTCCTGAGGAGCTTAGGGTTTTCGTACGAGGAGGCGGTGAAGGTGTGCGAGAGGCTGCCGGCGATATTTGGGTACAGTGTGGAGGGGAATTTGAAGCCAAAATACGAGTATTTGGTGGAGGAGATGGAGAGAAATGTGGAGGAGTTGAGGAAGTTTCCGCAGTATTTTGGGTTCAGCTTGGAGAAGAAAATAGTGCCAAGGCATTTACATTTGAAGGAGAGGAATGTGAGGATTGCTTTGAATAGGATGTTGTTGTGGAGTGACCAGAGGTTTTATGCAAAATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

277

Amino Acids

31.95

Weight (kDa)

9.37

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 126 - 272 5e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 318, 417
AccII CGCG 3 cut(s) 117, 147, 497
AciI CCGC 9 cut(s) 103, 115, 127, 154, 354, 375, 388, 578, 701
AcsI RAATTY 1 cut(s) 631
AcyI GRCGYC 3 cut(s) 192, 315, 414
AfaI GTAC 2 cut(s) 569, 617
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 508, 637, 757, 784
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 5 cut(s) 178, 472, 526, 555, 720
AluI AGCT 5 cut(s) 178, 472, 526, 555, 720
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 70
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 3 cut(s) 390, 439, 598
ApoI RAATTY 1 cut(s) 631
AspLEI GCGC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 592
AxyI CCTNAGG 1 cut(s) 548
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 3 cut(s) 377, 426, 585
BccI CCATC 2 cut(s) 46, 661
BcoDI GTCTC 1 cut(s) 70
BisI GCNGC 4 cut(s) 376, 391, 440, 599
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 4 cut(s) 377, 392, 441, 600
BmiI GGNNCC 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 556
Bpu1102I GCTNAGC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 3 cut(s) 192, 315, 414
BsaJI CCNNGG 2 cut(s) 234, 740
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 275, 305, 335, 365
Bse118I RCCGGY 1 cut(s) 601
Bse21I CCTNAGG 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 234, 740
BseGI GGATG 5 cut(s) 56, 123, 150, 381, 795
BseMII CTCAG 3 cut(s) 464, 518, 539
BseRI GAGGAG 7 cut(s) 17, 283, 392, 565, 587, 677, 698
BseXI GCAGC 3 cut(s) 377, 426, 585
Bsh1236I CGCG 3 cut(s) 117, 147, 497
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 378
BsiEI CGRYCG 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 1 cut(s) 602
BsiWI CGTACG 1 cut(s) 567
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 479
Bsp1720I GCTNAGC 1 cut(s) 473
BspACI CCGC 9 cut(s) 103, 115, 127, 154, 354, 375, 388, 578, 701
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 3 cut(s) 465, 519, 540
BspFNI CGCG 3 cut(s) 117, 147, 497
BspLI GGNNCC 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 2 cut(s) 234, 740
BssNI GRCGYC 3 cut(s) 192, 315, 414
BssT1I CCWWGG 2 cut(s) 234, 740
Bst4CI ACNGT 3 cut(s) 217, 369, 620
Bst6I CTCTTC 3 cut(s) 73, 293, 410
BstACI GRCGYC 3 cut(s) 192, 315, 414
BstC8I GCNNGC 2 cut(s) 479, 603
BstDEI CTNAG 6 cut(s) 61, 337, 473, 527, 548, 556
BstF5I GGATG 5 cut(s) 56, 123, 150, 381, 795
BstFNI CGCG 3 cut(s) 117, 147, 497
BstHHI GCGC 1 cut(s) 499
BstMAI GTCTC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 2 cut(s) 153, 478
BstUI CGCG 3 cut(s) 117, 147, 497
BstV1I GCAGC 3 cut(s) 377, 426, 585
BstV2I GAAGAC 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 548
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 5 cut(s) 56, 123, 150, 381, 795
BtsIMutI CAGTG 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 479, 603
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 601
CseI GACGC 3 cut(s) 136, 200, 445
Csp6I GTAC 2 cut(s) 568, 616
CviQI GTAC 2 cut(s) 568, 616
DdeI CTNAG 6 cut(s) 61, 337, 473, 527, 548, 556
Eam1104I CTCTTC 3 cut(s) 73, 293, 410
EarI CTCTTC 3 cut(s) 73, 293, 410
EciI GGCGGA 2 cut(s) 143, 343
Eco130I CCWWGG 2 cut(s) 234, 740
Eco81I CCTNAGG 1 cut(s) 548
EcoT14I CCWWGG 2 cut(s) 234, 740
ErhI CCWWGG 2 cut(s) 234, 740
FaiI YATR 1 cut(s) 819
Fnu4HI GCNGC 4 cut(s) 376, 391, 440, 599
FokI GGATG 5 cut(s) 43, 110, 137, 368, 802
Fsp4HI GCNGC 4 cut(s) 376, 391, 440, 599
GlaI GCGC 1 cut(s) 498
GluI GCNGC 4 cut(s) 376, 391, 440, 599
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 602
HgaI GACGC 3 cut(s) 136, 200, 445
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 3 cut(s) 192, 315, 414
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 3 cut(s) 248, 264, 462
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 602
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 247, 253, 412, 431
Hpy188III TCNNGA 2 cut(s) 466, 547
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 8 cut(s) 194, 317, 320, 347, 416, 419, 439, 487
HpyAV CCTTC 5 cut(s) 86, 280, 529, 577, 751
HpyCH4III ACNGT 3 cut(s) 217, 369, 620
HpyCH4IV ACGT 2 cut(s) 315, 414
HpyCH4V TGCA 2 cut(s) 442, 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 478
HpyF3I CTNAG 6 cut(s) 61, 337, 473, 527, 548, 556
HpySE526I ACGT 2 cut(s) 315, 414
Hsp92I GRCGYC 3 cut(s) 192, 315, 414
HspAI GCGC 1 cut(s) 497
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
KspAI GTTAAC 1 cut(s) 220
LmnI GCTCC 2 cut(s) 183, 552
LpnPI CCDG 9 cut(s) 171, 336, 385, 408, 440, 503, 560, 615, 821
Lsp1109I GCAGC 3 cut(s) 377, 426, 585
MaeII ACGT 2 cut(s) 315, 414
MaeIII GTNAC 1 cut(s) 803
MboII GAAGA 7 cut(s) 36, 39, 60, 280, 319, 397, 739
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 1 cut(s) 631
MluI ACGCGT 1 cut(s) 145
MlyI GAGTC 3 cut(s) 242, 258, 471
MmeI TCCRAC 5 cut(s) 270, 276, 321, 435, 454
MroNI GCCGGC 1 cut(s) 601
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 1 cut(s) 602
MvnI CGCG 3 cut(s) 117, 147, 497
MwoI GCNNNNNNNGC 2 cut(s) 153, 478
NaeI GCCGGC 1 cut(s) 603
NgoMIV GCCGGC 1 cut(s) 601
NlaIV GGNNCC 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 803
OliI CACNNNNGTG 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 603
Pfl23II CGTACG 1 cut(s) 567
PkrI GCNGC 4 cut(s) 377, 392, 441, 600
PleI GAGTC 3 cut(s) 242, 258, 470
PpsI GAGTC 3 cut(s) 242, 258, 470
PspLI CGTACG 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 545
PsrI GAACNNNNNNTAC 2 cut(s) 698, 730
RsaI GTAC 2 cut(s) 569, 617
RsaNI GTAC 2 cut(s) 568, 616
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 4 cut(s) 376, 391, 440, 599
SchI GAGTC 3 cut(s) 242, 258, 471
SduI GDGCHC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 631
SsiI CCGC 9 cut(s) 103, 115, 127, 154, 354, 375, 388, 578, 701
StyI CCWWGG 2 cut(s) 234, 740
TaaI ACNGT 3 cut(s) 217, 369, 620
TaiI ACGT 2 cut(s) 318, 417
TaqI TCGA 4 cut(s) 303, 330, 417, 465
TaqII GACCGA 1 cut(s) 448
TasI AATT 1 cut(s) 631
TauI GCSGC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 3 cut(s) 390, 439, 598
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 1 cut(s) 82
TspRI CASTG 1 cut(s) 625
XapI RAATTY 1 cut(s) 631
ZraI GACGTC 2 cut(s) 316, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.