Rw6G010290
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014330
Physical Location & Seq
Forward (+)
17750921 .. 17755516
4596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010290.1

Sequence Viewer

Length: 933 bp
ATGCTTCGATTAGAGACATGGATTAAACAACAAAGTGATGAAGATAGACGACAGTTAGTGATAAAGATTGATGAGTTGATGAATCCAGGTAGTACTTTCTTAAAAGAACCTGTAGAGAAGGCGAAGCCGAAAGGGCGTCCACGTCAGATTGACACTATCTCTTCTGCCCATCCAAATGCAAACCCTCACTTCATCAAGTTCCGCACCTCCTACCGCGAAAACATCCGCTACCTCAAAACCCTACGCGTCATCCGCCCTGACACAAAACCCAACAAGCTCCCCCTCCCCGACGCCACCGACCACCTCCTCGCCACGGTTAACTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCAAAGACTCGCCTTCCTCTCCCCCAACCTCTTCTCCTCCAACTTCGACCCCACCGACGTCGCCCCTGTCTTCGACTTCTTAGCCGACGACCTCTCCTCCTCGCCCGAACAGTCCTGCGGCCTCATCCTCCGCTGCCCTGACCTCCTCTTCTCCGACGTCGAGTTCTGCCTCCGACCGACGCTGCATTTTCTCAAACAGGTGGGAGTCGAGAAGCTGAGCACGCCGACGAACCTGAACGCGCATTTGTTGAACACAAGGGTGGAGAAGCTGAGAGGGAAGGTAAGGTTCCTGAGGAGCTTAGGGTTTTCGTACGAGGAGGCGGTGAAGGTGTGTGAGAGGCTGCCGGCGATATTTGGGTACAGTGTGGAGGGGAATTTGAAGCCAAAATACGAGTATTTGGTGGAGGAGATGGAGAGAAATGTGGAGGAGTTGAAGAAGTTTCCGCAGTATTTTGGGTTCAGCTTGGAGAAGAAAATAGTGCCAAGGCATTTACATTTGAAGGAGAGGAATGTGAGGATTGCTTTGAATAGGATGTTGTTGTGGAGTGACCAGAGGTTTTATGCAAAATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

310

Amino Acids

36.16

Weight (kDa)

9.42

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 159 - 305 7.4e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 417, 516
AccII CGCG 3 cut(s) 216, 246, 596
AciI CCGC 8 cut(s) 202, 214, 226, 253, 474, 487, 677, 800
AcsI RAATTY 1 cut(s) 730
AcyI GRCGYC 4 cut(s) 136, 291, 414, 513
AfaI GTAC 3 cut(s) 94, 668, 716
AfiI CCNNNNNNNGG 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 5 cut(s) 607, 736, 790, 856, 883
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 85
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 5 cut(s) 277, 571, 625, 654, 819
AluI AGCT 5 cut(s) 277, 571, 625, 654, 819
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 1 cut(s) 8
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 3 cut(s) 489, 538, 697
ApoI RAATTY 1 cut(s) 730
AspLEI GCGC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 691
AxyI CCTNAGG 1 cut(s) 647
BarI GAAGNNNNNNTAC 2 cut(s) 728, 760
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 476, 525, 684
BccI CCATC 2 cut(s) 177, 760
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 4 cut(s) 475, 490, 539, 698
BlpI GCTNAGC 1 cut(s) 572
BlsI GCNGC 4 cut(s) 476, 491, 540, 699
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 644
BmrFI CCNGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 418
Bpu10I CCTNAGC 1 cut(s) 655
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 311
BsaHI GRCGYC 4 cut(s) 136, 291, 414, 513
BsaJI CCNNGG 3 cut(s) 312, 333, 839
BsaXI ACNNNNNCTCC 6 cut(s) 374, 404, 434, 437, 464, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 700
Bse21I CCTNAGG 1 cut(s) 647
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 312, 333, 839
BseGI GGATG 5 cut(s) 169, 222, 249, 480, 894
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 563, 617, 638
BseRI GAGGAG 9 cut(s) 296, 382, 442, 445, 491, 664, 686, 776, 797
BseXI GCAGC 3 cut(s) 476, 525, 684
Bsh1236I CGCG 3 cut(s) 216, 246, 596
Bsh1285I CGRYCG 1 cut(s) 533
BshFI GGCC 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 1 cut(s) 701
BsiWI CGTACG 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 8
BsnI GGCC 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 578
Bsp1720I GCTNAGC 1 cut(s) 572
BspACI CCGC 8 cut(s) 202, 214, 226, 253, 474, 487, 677, 800
BspANI GGCC 1 cut(s) 477
BspCNI CTCAG 3 cut(s) 564, 618, 639
BspFNI CGCG 3 cut(s) 216, 246, 596
BspLI GGNNCC 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 3 cut(s) 312, 333, 839
BssNI GRCGYC 4 cut(s) 136, 291, 414, 513
BssT1I CCWWGG 2 cut(s) 333, 839
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 4 cut(s) 54, 316, 468, 719
Bst6I CTCTTC 3 cut(s) 166, 392, 509
BstACI GRCGYC 4 cut(s) 136, 291, 414, 513
BstC8I GCNNGC 2 cut(s) 578, 702
BstDEI CTNAG 5 cut(s) 436, 572, 626, 647, 655
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 5 cut(s) 169, 222, 249, 480, 894
BstFNI CGCG 3 cut(s) 216, 246, 596
BstHHI GCGC 1 cut(s) 598
BstMAI GTCTC 1 cut(s) 8
BstMCI CGRYCG 1 cut(s) 533
BstMWI GCNNNNNNNGC 3 cut(s) 133, 252, 577
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 3 cut(s) 216, 246, 596
BstV1I GCAGC 3 cut(s) 476, 525, 684
BstV2I GAAGAC 1 cut(s) 418
Bsu36I CCTNAGG 1 cut(s) 647
BsuRI GGCC 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 5 cut(s) 169, 222, 249, 480, 894
BtsIMutI CAGTG 1 cut(s) 724
Cac8I GCNNGC 2 cut(s) 578, 702
CfoI GCGC 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 700
CseI GACGC 4 cut(s) 125, 235, 299, 544
Csp6I GTAC 3 cut(s) 93, 667, 715
CviAII CATG 1 cut(s) 18
CviQI GTAC 3 cut(s) 93, 667, 715
DdeI CTNAG 5 cut(s) 436, 572, 626, 647, 655
Eam1104I CTCTTC 3 cut(s) 166, 392, 509
EarI CTCTTC 3 cut(s) 166, 392, 509
EciI GGCGGA 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 333, 839
Eco81I CCTNAGG 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 333, 839
ErhI CCWWGG 2 cut(s) 333, 839
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 918
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 475, 490, 539, 698
FokI GGATG 5 cut(s) 156, 209, 236, 467, 901
Fsp4HI GCNGC 4 cut(s) 475, 490, 539, 698
GlaI GCGC 1 cut(s) 597
GluI GCNGC 4 cut(s) 475, 490, 539, 698
HaeIII GGCC 1 cut(s) 477
HapII CCGG 1 cut(s) 701
HgaI GACGC 4 cut(s) 125, 235, 299, 544
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 4 cut(s) 136, 291, 414, 513
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 4 cut(s) 82, 347, 363, 561
HpaI GTTAAC 1 cut(s) 319
HpaII CCGG 1 cut(s) 701
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 2 cut(s) 140, 319
Hpy188I TCNGA 5 cut(s) 147, 346, 352, 511, 530
Hpy188III TCNNGA 2 cut(s) 565, 646
Hpy8I GTNNAC 2 cut(s) 140, 319
Hpy99I CGWCG 8 cut(s) 293, 416, 419, 446, 515, 518, 538, 586
HpyAV CCTTC 5 cut(s) 112, 379, 628, 676, 850
HpyCH4III ACNGT 4 cut(s) 54, 316, 468, 719
HpyCH4IV ACGT 3 cut(s) 142, 414, 513
HpyCH4V TGCA 3 cut(s) 179, 541, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 252, 577
HpyF3I CTNAG 5 cut(s) 436, 572, 626, 647, 655
HpySE526I ACGT 3 cut(s) 142, 414, 513
Hsp92I GRCGYC 4 cut(s) 136, 291, 414, 513
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 1 cut(s) 596
KroI GCCGGC 1 cut(s) 700
KroNI GCCGGC 1 cut(s) 702
KspAI GTTAAC 1 cut(s) 319
LmnI GCTCC 2 cut(s) 282, 651
Lsp1109I GCAGC 3 cut(s) 476, 525, 684
MaeII ACGT 3 cut(s) 142, 414, 513
MaeIII GTNAC 1 cut(s) 902
MboII GAAGA 7 cut(s) 53, 153, 379, 418, 496, 802, 838
MhlI GDGCHC 1 cut(s) 578
MluCI AATT 1 cut(s) 730
MluI ACGCGT 1 cut(s) 244
MlyI GAGTC 3 cut(s) 341, 357, 570
MmeI TCCRAC 5 cut(s) 369, 375, 420, 534, 553
MroNI GCCGGC 1 cut(s) 700
MseI TTAA 3 cut(s) 24, 101, 318
MslI CAYNNNNRTG 2 cut(s) 174, 614
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 3 cut(s) 216, 246, 596
MwoI GCNNNNNNNGC 3 cut(s) 133, 252, 577
NaeI GCCGGC 1 cut(s) 702
NgoMIV GCCGGC 1 cut(s) 700
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 644
NmuCI GTSAC 1 cut(s) 902
OliI CACNNNNGTG 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdiI GCCGGC 1 cut(s) 702
PfeI GAWTC 1 cut(s) 82
Pfl23II CGTACG 1 cut(s) 666
PkrI GCNGC 4 cut(s) 476, 491, 540, 699
PleI GAGTC 3 cut(s) 341, 357, 569
PpsI GAGTC 3 cut(s) 341, 357, 569
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 644
PsrI GAACNNNNNNTAC 2 cut(s) 797, 829
RsaI GTAC 3 cut(s) 94, 668, 716
RsaNI GTAC 3 cut(s) 93, 667, 715
RseI CAYNNNNRTG 2 cut(s) 174, 614
SaqAI TTAA 3 cut(s) 24, 101, 318
SatI GCNGC 4 cut(s) 475, 490, 539, 698
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 3 cut(s) 341, 357, 570
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 578
SfcI CTRYAG 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 174, 614
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 730
SsiI CCGC 8 cut(s) 202, 214, 226, 253, 474, 487, 677, 800
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 333, 839
TaaI ACNGT 4 cut(s) 54, 316, 468, 719
TaiI ACGT 3 cut(s) 145, 417, 516
TaqI TCGA 5 cut(s) 7, 402, 429, 516, 564
TaqII GACCGA 1 cut(s) 547
TasI AATT 1 cut(s) 730
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 24, 101, 318
Tru9I TTAA 3 cut(s) 24, 101, 318
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 3 cut(s) 489, 538, 697
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 3 cut(s) 54, 95, 181
TspRI CASTG 1 cut(s) 724
XapI RAATTY 1 cut(s) 730
ZraI GACGTC 2 cut(s) 415, 514
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.