MD10G1082300.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014330
Physical Location & Seq
Reverse (-)
12115589 .. 12116434
846 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1082300.v1.1.491

Sequence Viewer

Length: 846 bp
ATGCCACTGCTTCACACTCTTTCCATCATCCCACCTCCCTCTCCCTCCTCCTCCTCCTCCTCTATCGCCACCTTAAACCCTAATCCCCATCCTCCCTCCCACTTCATCAAGTTCCGTACATCCTACCGCGAAAACCTCCGGTACCTCAAAACCCTGCGCATCATCTCCCCCGAAACCAGCCCCAAAAAGCTCCCCCTCCCCGACGCCACCGACCAAATCCTCGCAACCGTAGGTTTCCTCAAGTCGAAGGGCTTTACGGACTCCGACTTCCCAAGACTGGCCTTCCTCTCCCCTAAGCTCTTCTCCCCCTCCCTCGATCCAACTGACATTGCCCCCGTCTTTGATTTCCTGGCTTCTGATCTCTCCGCTGACCCTGCGTTTTCCTGCGGCCTCATCCTTCGCTGCCCCGACCTCCTATTTGCGGATGTCGAGTTCTGCCTCCGCCCAACACTGCATTATCTTGAACAGTTGGGGATTGACAAGCCCAAGTCACCGTCGAATCTGAATGCACATTTGCTGAACACTAGGGTGGAAAAGCTCAAGAAGAAGATGAGGTTCTTGAGGAGTTTAGGGCTTTCGTACGAGGAGGCGGCCAATGTGTGTGCGAGGCTGCCAGCGATTTTCGGGTACAGTGTGGAGGATAACTTGCGGCCCAAGTATGAATATTTGGTGAAGGATATGGGAAGGAGCGTGGAGGAGTTGAAGAAGTTTCCGCAGTATTTTGGATTCAGTTTGGAGAAGAGAATTGTCCCCAGGCATTTGCATTTGAAAGAAAGGAATGTCGAGATTCCGTTGAATAGGATGCTATTGTGGAGTGACCAAAAGTTTTATACAAAGTGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

282

Amino Acids

32.1

Weight (kDa)

9.39

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 131 - 276 3.8e-33 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18870
fragaria_vesca FvH4_2g08020
malus_domestica MD10G1082300.v1.1
prunus_persica Prupe.8G104800_v2.0.a1
pyrus_communis pycom10g06490
rosa_chinensis RchiOBHm_Chr6g0262541
rosa_laevigata RLG00000014419
rosa_multiflora Rmu_sc0000596.1_g000014
rosa_roxburghii Rroxscaffold_177G00434400 Rroxscaffold_7G00205180
rosa_rugosa Rorug05G0598000
rosa_samantha Rh6AG119100 Rh6BG113200 Rh6CG111400 Rh6DG101100
rosa_wichuraiana Rw6G010290 Rw6G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccII CGCG 1 cut(s) 129
AciI CCGC 8 cut(s) 127, 366, 387, 422, 442, 590, 649, 713
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 591
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 4 cut(s) 118, 143, 581, 629
AfiI CCNNNNNNNGG 2 cut(s) 277, 421
AgsI TTSAA 4 cut(s) 464, 703, 769, 796
AjnI CCWGG 2 cut(s) 348, 752
AleI CACNNNNGTG 1 cut(s) 527
AloI GAACNNNNNNTCC 2 cut(s) 416, 448
AluBI AGCT 3 cut(s) 190, 298, 538
AluI AGCT 3 cut(s) 190, 298, 538
AlwI GGATC 1 cut(s) 311
AoxI GGCC 4 cut(s) 279, 388, 591, 650
ApeKI GCWGC 2 cut(s) 402, 610
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 651
AsuHPI GGTGA 2 cut(s) 483, 682
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 389, 597
BccI CCATC 2 cut(s) 32, 96
BciT130I CCWGG 2 cut(s) 350, 754
BfaI CTAG 1 cut(s) 525
BisI GCNGC 5 cut(s) 388, 403, 591, 611, 650
BlsI GCNGC 5 cut(s) 389, 404, 592, 612, 651
Bme1390I CCNGG 2 cut(s) 350, 754
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 350, 754
BmsI GCATC 2 cut(s) 168, 792
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 3 cut(s) 224, 524, 580
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 752
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 421
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 350, 754
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 6 cut(s) 27, 88, 119, 393, 430, 807
BseLI CCNNNNNNNGG 2 cut(s) 277, 421
BseMI GCAATG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 8 cut(s) 37, 40, 43, 46, 49, 577, 599, 710
BseXI GCAGC 2 cut(s) 389, 597
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 4 cut(s) 281, 390, 593, 652
BshNI GGYRCC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 139
BsiWI CGTACG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 2 cut(s) 277, 421
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 4 cut(s) 281, 390, 593, 652
Bsp143I GATC 2 cut(s) 316, 358
BspACI CCGC 8 cut(s) 127, 366, 387, 422, 442, 590, 649, 713
BspANI GGCC 4 cut(s) 281, 390, 593, 652
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 2 cut(s) 316, 358
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 350, 754
Bst4CI ACNGT 4 cut(s) 229, 468, 495, 632
Bst6I CTCTTC 2 cut(s) 305, 734
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 6 cut(s) 27, 88, 119, 393, 430, 807
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 2 cut(s) 319, 361
BstMBI GATC 2 cut(s) 316, 358
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 2 cut(s) 350, 754
BstSCI CCNGG 2 cut(s) 348, 752
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 389, 597
BsuRI GGCC 4 cut(s) 281, 390, 593, 652
BtsCI GGATG 6 cut(s) 27, 88, 119, 393, 430, 807
BtsI GCAGTG 2 cut(s) 5, 449
BtsIMutI CAGTG 3 cut(s) 5, 449, 637
Cac8I GCNNGC 1 cut(s) 615
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 651
CseI GACGC 1 cut(s) 212
Csp6I GTAC 4 cut(s) 117, 142, 580, 628
CviQI GTAC 4 cut(s) 117, 142, 580, 628
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 318, 360
DpnII GATC 2 cut(s) 316, 358
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 305, 734
EarI CTCTTC 2 cut(s) 305, 734
EciI GGCGGA 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 348, 752
FaiI YATR 3 cut(s) 660, 680, 831
FaqI GGGAC 1 cut(s) 734
Fnu4HI GCNGC 5 cut(s) 388, 403, 591, 611, 650
FokI GGATG 6 cut(s) 14, 75, 106, 380, 437, 814
Fsp4HI GCNGC 5 cut(s) 388, 403, 591, 611, 650
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GluI GCNGC 5 cut(s) 388, 403, 591, 611, 650
HaeIII GGCC 4 cut(s) 281, 390, 593, 652
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 4 cut(s) 260, 499, 726, 787
HpaII CCGG 1 cut(s) 139
HphI GGTGA 2 cut(s) 483, 682
Hpy188I TCNGA 3 cut(s) 265, 358, 504
Hpy188III TCNNGA 4 cut(s) 461, 541, 559, 784
Hpy99I CGWCG 2 cut(s) 206, 499
HpyAV CCTTC 5 cut(s) 241, 292, 407, 667, 678
HpyCH4III ACNGT 4 cut(s) 229, 468, 495, 632
HpyCH4V TGCA 3 cut(s) 454, 509, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 1 cut(s) 157
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 316, 358
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 2 cut(s) 195, 687
Lsp1109I GCAGC 2 cut(s) 389, 597
LweI GCATC 2 cut(s) 168, 792
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 2 cut(s) 489, 815
MalI GATC 2 cut(s) 318, 360
MboI GATC 2 cut(s) 316, 358
MboII GAAGA 5 cut(s) 292, 556, 559, 715, 751
MluCI AATT 1 cut(s) 744
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 288, 344
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 350, 754
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 2 cut(s) 350, 754
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 2 cut(s) 316, 358
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 489, 815
NsbI TGCGCA 1 cut(s) 158
OliI CACNNNNGTG 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 305
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 3 cut(s) 499, 726, 787
Pfl23II CGTACG 1 cut(s) 579
PkrI GCNGC 5 cut(s) 389, 404, 592, 612, 651
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 348, 752
PspGI CCWGG 2 cut(s) 348, 752
PspLI CGTACG 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 651
RsaI GTAC 4 cut(s) 118, 143, 581, 629
RsaNI GTAC 4 cut(s) 117, 142, 580, 628
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 5 cut(s) 388, 403, 591, 611, 650
Sau3AI GATC 2 cut(s) 316, 358
Sau96I GGNCC 1 cut(s) 651
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 350, 754
SfaNI GCATC 2 cut(s) 168, 792
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 3 cut(s) 239, 539, 559
SmoI CTYRAG 3 cut(s) 239, 539, 559
Sse9I AATT 1 cut(s) 744
SsiI CCGC 8 cut(s) 127, 366, 387, 422, 442, 590, 649, 713
SspI AATATT 1 cut(s) 665
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 348, 752
TaaI ACNGT 4 cut(s) 229, 468, 495, 632
TaqI TCGA 5 cut(s) 245, 315, 429, 497, 783
TasI AATT 1 cut(s) 744
TauI GCSGC 3 cut(s) 390, 593, 652
TfiI GAWTC 3 cut(s) 499, 726, 787
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 3 cut(s) 12, 456, 637
TseFI GTSAC 2 cut(s) 489, 815
TseI GCWGC 2 cut(s) 402, 610
Tsp45I GTSAC 2 cut(s) 489, 815
TspDTI ATGAA 2 cut(s) 94, 675
TspGWI ACGGA 3 cut(s) 104, 272, 780
TspRI CASTG 3 cut(s) 12, 456, 637
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.