AT3G19360

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6707133 .. 6709191
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19360.1

Sequence Viewer

Length: 1161 bp
ATGGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAATCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCATTCACTATCTGAATCACAATCACAATCTCAACCGTCTCAGCAATTACAGCCTGCATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCAGCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGGGACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAGGAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAATTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACAGGGAGAGGGAGAGAGAGAGGGAAAGGGAGAGGGAAAGACCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGAAGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGAGTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGACTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACCATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGCACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAAGTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGCAGAGTTGCATAACTCTGTTGGAAGGGTAGAAGGAGAAGCTATGAACGCGGTAGCGTCTGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACAAGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAAGTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGTGGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGA

Protein Analysis

386

Amino Acids

43.12

Weight (kDa)

6.99

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_UNK PF25427 104 - 136 3.2e-07 UNK-like, CCCH zinc finger
zf-CCCH PF00642 270 - 296 4.3e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L PF25585 271 - 294 1.9e-06 DUS3L CCCH zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 680
Acc36I ACCTGC 2 cut(s) 775, 979
Acc65I GGTACC 2 cut(s) 763, 967
AccB1I GGYRCC 3 cut(s) 505, 763, 967
AccI GTMKAC 1 cut(s) 1139
AccII CGCG 1 cut(s) 938
AciI CCGC 2 cut(s) 938, 1045
AclWI GGATC 2 cut(s) 636, 1118
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 3 cut(s) 765, 806, 969
AfiI CCNNNNNNNGG 2 cut(s) 53, 446
AgeI ACCGGT 1 cut(s) 1123
AgsI TTSAA 4 cut(s) 84, 181, 274, 737
AluBI AGCT 3 cut(s) 562, 672, 929
AluI AGCT 3 cut(s) 562, 672, 929
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 3 cut(s) 108, 162, 1098
AlwI GGATC 2 cut(s) 636, 1118
Ama87I CYCGRG 1 cut(s) 652
AoxI GGCC 2 cut(s) 185, 883
ApeKI GCWGC 2 cut(s) 403, 698
ApoI RAATTY 1 cut(s) 335
AsiGI ACCGGT 1 cut(s) 1123
Asp718I GGTACC 2 cut(s) 763, 967
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 36, 374
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 1 cut(s) 434
BalI TGGCCA 1 cut(s) 885
BanI GGYRCC 3 cut(s) 505, 763, 967
BanII GRGCYC 1 cut(s) 674
BbsI GAAGAC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 674
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 415, 685
BccI CCATC 3 cut(s) 253, 274, 718
BclI TGATCA 2 cut(s) 535, 703
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 3 cut(s) 108, 162, 1098
BfaI CTAG 2 cut(s) 189, 321
BfoI RGCGCY 1 cut(s) 509
BfuAI ACCTGC 2 cut(s) 775, 979
BisI GCNGC 3 cut(s) 404, 699, 1046
BlsI GCNGC 3 cut(s) 405, 700, 1047
Bme1390I CCNGG 1 cut(s) 761
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 652
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 4 cut(s) 264, 507, 765, 969
BmrFI CCNGG 1 cut(s) 761
BmsI GCATC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 391, 423
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 571, 1049
BpuMI CCSGG 1 cut(s) 761
Bsa29I ATCGAT 1 cut(s) 1113
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 1123
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 446
Bse118I RCCGGY 1 cut(s) 1123
Bse1I ACTGG 3 cut(s) 812, 1112, 1148
Bse3DI GCAATG 1 cut(s) 996
BseCI ATCGAT 1 cut(s) 1113
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 3 cut(s) 264, 561, 756
BseLI CCNNNNNNNGG 2 cut(s) 53, 446
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 2 cut(s) 173, 248
BseNI ACTGG 3 cut(s) 812, 1112, 1148
BseRI GAGGAG 2 cut(s) 270, 429
BseXI GCAGC 2 cut(s) 415, 685
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 938
BshFI GGCC 2 cut(s) 187, 885
BshNI GGYRCC 3 cut(s) 505, 763, 967
BshTI ACCGGT 1 cut(s) 1123
BshVI ATCGAT 1 cut(s) 1113
BsiHKAI GWGCWC 1 cut(s) 674
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 2 cut(s) 761, 1124
BslFI GGGAC 4 cut(s) 12, 310, 361, 617
BslI CCNNNNNNNGG 2 cut(s) 53, 446
BsmAI GTCTC 3 cut(s) 108, 162, 1098
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 4 cut(s) 12, 310, 361, 617
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 2 cut(s) 187, 885
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 4 cut(s) 535, 628, 703, 1110
BspACI CCGC 2 cut(s) 938, 1045
BspANI GGCC 2 cut(s) 187, 885
BspCNI CTCAG 2 cut(s) 172, 247
BspDI ATCGAT 1 cut(s) 1113
BspFNI CGCG 1 cut(s) 938
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 4 cut(s) 264, 507, 765, 969
BspMI ACCTGC 2 cut(s) 775, 979
BspPI GGATC 2 cut(s) 636, 1118
BspT107I GGYRCC 3 cut(s) 505, 763, 967
BsrDI GCAATG 1 cut(s) 996
BsrFI RCCGGY 1 cut(s) 1123
BsrI ACTGG 3 cut(s) 812, 1112, 1148
BssAI RCCGGY 1 cut(s) 1123
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 4 cut(s) 535, 628, 703, 1110
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 3 cut(s) 156, 498, 802
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 159, 234
BstF5I GGATG 3 cut(s) 264, 561, 756
BstFNI CGCG 1 cut(s) 938
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 4 cut(s) 538, 631, 706, 1113
BstMAI GTCTC 3 cut(s) 108, 162, 1098
BstMBI GATC 4 cut(s) 535, 628, 703, 1110
BstMWI GCNNNNNNNGC 4 cut(s) 169, 698, 935, 980
BstSCI CCNGG 1 cut(s) 759
BstUI CGCG 1 cut(s) 938
BstV1I GCAGC 2 cut(s) 415, 685
BstV2I GAAGAC 1 cut(s) 818
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
Bsu15I ATCGAT 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 187, 885
BsuTUI ATCGAT 1 cut(s) 1113
BtsCI GGATG 3 cut(s) 264, 561, 756
BtsI GCAGTG 1 cut(s) 969
BtsIMutI CAGTG 1 cut(s) 969
BveI ACCTGC 2 cut(s) 775, 979
Cac8I GCNNGC 1 cut(s) 174
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 1 cut(s) 1123
Cfr13I GGNCC 1 cut(s) 434
ClaI ATCGAT 1 cut(s) 1113
CseI GACGC 1 cut(s) 933
Csp6I GTAC 3 cut(s) 764, 805, 968
CspAI ACCGGT 1 cut(s) 1123
CviAII CATG 5 cut(s) 31, 383, 623, 826, 881
CviQI GTAC 3 cut(s) 764, 805, 968
DdeI CTNAG 2 cut(s) 159, 234
DinI GGCGCC 1 cut(s) 507
DpnI GATC 4 cut(s) 537, 630, 705, 1112
DpnII GATC 4 cut(s) 535, 628, 703, 1110
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 674
Eco47I GGWCC 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 674
EgeI GGCGCC 1 cut(s) 507
EheI GGCGCC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 5 cut(s) 34, 386, 626, 829, 884
FalI AAGNNNNNCTT 6 cut(s) 484, 516, 533, 565, 857, 889
FaqI GGGAC 4 cut(s) 12, 310, 361, 617
FatI CATG 5 cut(s) 30, 382, 622, 825, 880
FbaI TGATCA 2 cut(s) 535, 703
FblI GTMKAC 1 cut(s) 1139
Fnu4HI GCNGC 3 cut(s) 404, 699, 1046
FokI GGATG 3 cut(s) 271, 568, 743
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 3 cut(s) 404, 699, 1046
FspBI CTAG 2 cut(s) 189, 321
GlaI GCGC 1 cut(s) 507
GluI GCNGC 3 cut(s) 404, 699, 1046
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 2 cut(s) 187, 885
HapII CCGG 2 cut(s) 761, 1124
HgaI GACGC 1 cut(s) 933
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 5 cut(s) 34, 386, 626, 829, 884
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 1140
HindII GTYRAC 1 cut(s) 1140
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 8 cut(s) 5, 20, 61, 80, 134, 650, 1019, 1076
HpaII CCGG 2 cut(s) 761, 1124
HphI GGTGA 2 cut(s) 36, 374
Hpy166II GTNNAC 4 cut(s) 289, 365, 805, 1140
Hpy188I TCNGA 5 cut(s) 19, 133, 540, 715, 1032
Hpy188III TCNNGA 5 cut(s) 452, 550, 623, 644, 796
Hpy8I GTNNAC 4 cut(s) 289, 365, 805, 1140
Hpy99I CGWCG 2 cut(s) 229, 415
HpyAV CCTTC 4 cut(s) 249, 906, 914, 1034
HpyCH4III ACNGT 3 cut(s) 156, 498, 802
HpyCH4V TGCA 8 cut(s) 40, 121, 176, 612, 770, 825, 898, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 698, 935, 980
HpyF3I CTNAG 2 cut(s) 159, 234
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 5 cut(s) 34, 386, 626, 829, 884
HspAI GCGC 1 cut(s) 506
KasI GGCGCC 1 cut(s) 505
KpnI GGTACC 2 cut(s) 767, 971
Ksp22I TGATCA 2 cut(s) 535, 703
Kzo9I GATC 4 cut(s) 535, 628, 703, 1110
LmnI GCTCC 1 cut(s) 1071
Lsp1109I GCAGC 2 cut(s) 415, 685
LweI GCATC 1 cut(s) 765
MaeI CTAG 2 cut(s) 189, 321
MaeIII GTNAC 3 cut(s) 11, 869, 1009
MalI GATC 4 cut(s) 537, 630, 705, 1112
MboI GATC 4 cut(s) 535, 628, 703, 1110
MboII GAAGA 6 cut(s) 542, 553, 599, 823, 1049, 1096
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 674
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 7 cut(s) 164, 335, 373, 415, 426, 523, 613
MluNI TGGCCA 1 cut(s) 885
Mly113I GGCGCC 1 cut(s) 506
MlyI GAGTC 2 cut(s) 644, 1070
MmeI TCCRAC 3 cut(s) 38, 412, 889
Mox20I TGGCCA 1 cut(s) 885
MscI TGGCCA 1 cut(s) 885
MseI TTAA 2 cut(s) 213, 1089
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 885
MspI CCGG 2 cut(s) 761, 1124
MspR9I CCNGG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 121
MvnI CGCG 1 cut(s) 938
MwoI GCNNNNNNNGC 4 cut(s) 169, 698, 935, 980
NarI GGCGCC 1 cut(s) 506
NciI CCSGG 1 cut(s) 761
NdeII GATC 4 cut(s) 535, 628, 703, 1110
NlaIII CATG 5 cut(s) 34, 386, 626, 829, 884
NlaIV GGNNCC 4 cut(s) 264, 507, 765, 969
NmuCI GTSAC 1 cut(s) 869
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 1 cut(s) 187
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 6 cut(s) 5, 20, 61, 80, 134, 1019
PinAI ACCGGT 1 cut(s) 1123
PkrI GCNGC 3 cut(s) 405, 700, 1047
PleI GAGTC 2 cut(s) 644, 1070
PluTI GGCGCC 1 cut(s) 509
PpsI GAGTC 2 cut(s) 644, 1070
PsiI TTATAA 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 674
PspN4I GGNNCC 4 cut(s) 264, 507, 765, 969
PspPI GGNCC 1 cut(s) 434
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 3 cut(s) 765, 806, 969
RsaNI GTAC 3 cut(s) 764, 805, 968
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 674
SalI GTCGAC 1 cut(s) 1138
SaqAI TTAA 2 cut(s) 213, 1089
SatI GCNGC 3 cut(s) 404, 699, 1046
Sau3AI GATC 4 cut(s) 535, 628, 703, 1110
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 2 cut(s) 644, 1070
ScrFI CCNGG 1 cut(s) 761
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 1 cut(s) 765
SfoI GGCGCC 1 cut(s) 507
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 550, 1064
SmoI CTYRAG 2 cut(s) 550, 1064
Sse9I AATT 7 cut(s) 164, 335, 373, 415, 426, 523, 613
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 938, 1045
SspDI GGCGCC 1 cut(s) 505
SspMI CTAG 2 cut(s) 189, 321
SstI GAGCTC 1 cut(s) 674
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 759
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 156, 498, 802
TaqI TCGA 5 cut(s) 8, 242, 413, 1113, 1139
TasI AATT 7 cut(s) 164, 335, 373, 415, 426, 523, 613
TatI WGTACW 1 cut(s) 804
TauI GCSGC 1 cut(s) 1048
TfiI GAWTC 6 cut(s) 5, 20, 61, 80, 134, 1019
Tru1I TTAA 2 cut(s) 213, 1089
Tru9I TTAA 2 cut(s) 213, 1089
TscAI CASTG 1 cut(s) 969
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 2 cut(s) 403, 698
Tsp45I GTSAC 1 cut(s) 869
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 969
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 1139
XspI CTAG 2 cut(s) 189, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.