Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029975.1

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Forward (+)

5103 .. 6596

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029975.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgaatttttctgatcaaacatcgtttatgccggtccagtcactttatgttggaggcagtgatgctgttaattgctggcctcctttccctatgaacaatgaagatcaccattctcagtttgagcagcaagctccaccctttaagagacctcgaaattccgaagaaccccaatcgaatccgatgccatacccgcctatgaacaactctagagtgcacccaccgaatgctccggttaatagaggagcaaacaacattttttacaagactcgtctgtgtgcaaattttaagaatggttcctgtaggaatggtgagaattgcaactatgcacatggcattgaagacattcgccagccgcctcccaattggcaagagcttgtcacagtgcgcgacgaggataggccactaactggtaattgggaggatgatcagaagataattcacaggatgaagctgtgcaagaagtttaataacggcgaggagtgtccttatggagataggtgtaactttcttcatgaagaaccggcaaagtttagggaggattcgggtaggtatagggagaacgcagcaatcagcattgggactacaggagcaccaatgacacatgtgagtagcactaatcattccgaggataataggcctgtgaacactggtatggatgcatttcgagtaaacatgaagccttattggaagactaagatatgtaataagtgggagcaaacgggaaaatgtccatttggtgagaagtgtcactttgctcatgggcaagcagagttacaagtgcctggggtgcgggttgaagcagaagtgatgacaagtgctcccatttcaacgaaaccacaaactgttcccgctaatgatccatctacaattgcaatggcagcaattcctgctgctgtaaacgaagaagttcagggtaagaagtgcggatttaaatggagaggatccaagaagatcaatcaaatcaatcgcatatatggtgactggcttgatgatgtccccctggtggagagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

337

Amino Acids

38.14

Weight (kDa)

6.79

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	1 cut(s)	387
AciI	CCGC	5 cut(s)	191, 353, 790, 849, 924
AclWI	GGATC	3 cut(s)	851, 936, 949
AcsI	RAATTY	3 cut(s)	4, 154, 280
AfiI	CCNNNNNNNGG	2 cut(s)	407, 1003
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	338, 797, 828
AjnI	CCWGG	2 cut(s)	781, 999
AluBI	AGCT	4 cut(s)	131, 373, 451, 1011
AluI	AGCT	4 cut(s)	131, 373, 451, 1011
Alw21I	GWGCWC	3 cut(s)	216, 592, 820
Alw26I	GTCTC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	851, 936, 949
AoxI	GGCC	3 cut(s)	77, 398, 635
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	4 cut(s)	124, 563, 878, 890
ApoI	RAATTY	3 cut(s)	4, 154, 280
Asp700I	GAANNNNTTC	2 cut(s)	342, 906
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	98, 320, 749, 989
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	941
BbsI	GAAGAC	2 cut(s)	345, 695
Bbv12I	GWGCWC	3 cut(s)	216, 592, 820
BbvI	GCAGC	4 cut(s)	136, 575, 877, 890
BccI	CCATC	1 cut(s)	868
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BciT130I	CCWGG	2 cut(s)	783, 1001
BclI	TGATCA	2 cut(s)	13, 424
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	298, 582
BisI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
BlsI	GCNGC	5 cut(s)	126, 354, 565, 880, 892
Bme1390I	CCNGG	2 cut(s)	783, 1001
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	295, 943
BmrFI	CCNGG	2 cut(s)	783, 1001
BmsI	GCATC	3 cut(s)	52, 171, 646
BpiI	GAAGAC	2 cut(s)	345, 695
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	624, 782, 999
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 1003
Bse118I	RCCGGY	2 cut(s)	31, 520
Bse1I	ACTGG	4 cut(s)	37, 412, 652, 986
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	2 cut(s)	783, 1001
BseDI	CCNNGG	3 cut(s)	624, 782, 999
BseGI	GGATG	3 cut(s)	427, 450, 661
BseLI	CCNNNNNNNGG	2 cut(s)	407, 1003
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	4 cut(s)	37, 412, 652, 986
BseRI	GAGGAG	2 cut(s)	255, 491
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	136, 575, 877, 890
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	79, 400, 637
BsiHKAI	GWGCWC	3 cut(s)	216, 592, 820
BsiSI	CCGG	3 cut(s)	32, 230, 521
BslFI	GGGAC	2 cut(s)	592, 980
BslI	CCNNNNNNNGG	2 cut(s)	407, 1003
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	592, 980
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	79, 400, 637
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	3 cut(s)	216, 592, 820
Bsp143I	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
BspACI	CCGC	5 cut(s)	191, 353, 790, 849, 924
BspANI	GGCC	3 cut(s)	79, 400, 637
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	295, 943
BspPI	GGATC	3 cut(s)	851, 936, 949
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	879
BsrFI	RCCGGY	2 cut(s)	31, 520
BsrI	ACTGG	4 cut(s)	37, 412, 652, 986
BssAI	RCCGGY	2 cut(s)	31, 520
BssECI	CCNNGG	3 cut(s)	624, 782, 999
BssMI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
Bst2UI	CCWGG	2 cut(s)	783, 1001
Bst4CI	ACNGT	2 cut(s)	382, 844
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstC8I	GCNNGC	4 cut(s)	77, 129, 350, 765
BstDEI	CTNAG	2 cut(s)	114, 693
BstF5I	GGATG	3 cut(s)	427, 450, 661
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	6 cut(s)	16, 106, 427, 859, 944, 954
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 787, 878, 887
BstNI	CCWGG	2 cut(s)	783, 1001
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	781, 999
BstSFI	CTRYAG	2 cut(s)	298, 582
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	136, 575, 877, 890
BstV2I	GAAGAC	2 cut(s)	345, 695
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	3 cut(s)	79, 400, 637
BtsCI	GGATG	3 cut(s)	427, 450, 661
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 387, 645
Cac8I	GCNNGC	4 cut(s)	77, 129, 350, 765
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	2 cut(s)	31, 520
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	5 cut(s)	329, 512, 602, 673, 758
DdeI	CTNAG	2 cut(s)	114, 693
DpnI	GATC	6 cut(s)	15, 105, 426, 858, 943, 953
DpnII	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
DraI	TTTAAA	1 cut(s)	931
Eco147I	AGGCCT	1 cut(s)	637
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	781, 999
EcoT22I	ATGCAT	1 cut(s)	661
FaeI	CATG	5 cut(s)	332, 515, 605, 676, 761
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	2 cut(s)	592, 980
FatI	CATG	5 cut(s)	328, 511, 601, 672, 757
FauI	CCCGC	3 cut(s)	198, 783, 856
FbaI	TGATCA	2 cut(s)	13, 424
Fnu4HI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
FokI	GGATG	3 cut(s)	434, 457, 668
Fsp4HI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
HaeIII	GGCC	3 cut(s)	79, 400, 637
HapII	CCGG	3 cut(s)	32, 230, 521
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	5 cut(s)	332, 515, 605, 676, 761
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	175, 265, 539
HpaII	CCGG	3 cut(s)	32, 230, 521
HphI	GGTGA	4 cut(s)	98, 320, 749, 989
Hpy166II	GTNNAC	4 cut(s)	214, 643, 670, 898
Hpy188I	TCNGA	5 cut(s)	13, 160, 180, 429, 625
Hpy188III	TCNNGA	2 cut(s)	207, 512
Hpy8I	GTNNAC	4 cut(s)	214, 643, 670, 898
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	382, 844
HpyCH4V	TGCA	7 cut(s)	214, 278, 318, 326, 456, 659, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 787, 878, 887
HpyF3I	CTNAG	2 cut(s)	114, 693
Hsp92II	CATG	5 cut(s)	332, 515, 605, 676, 761
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	2 cut(s)	13, 424
Kzo9I	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
LmnI	GCTCC	6 cut(s)	136, 232, 242, 587, 712, 823
Lsp1109I	GCAGC	4 cut(s)	136, 575, 877, 890
LweI	GCATC	3 cut(s)	52, 171, 646
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	6 cut(s)	39, 376, 500, 746, 771, 977
MalI	GATC	6 cut(s)	15, 105, 426, 858, 943, 953
MboI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
MboII	GAAGA	9 cut(s)	113, 173, 350, 442, 500, 527, 700, 914, 961
MfeI	CAATTG	2 cut(s)	361, 867
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	3 cut(s)	216, 592, 820
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	2 cut(s)	342, 906
MseI	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	3 cut(s)	32, 230, 521
MspR9I	CCNGG	2 cut(s)	783, 1001
MunI	CAATTG	2 cut(s)	361, 867
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	783, 1001
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	190, 787, 878, 887
NdeII	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
NlaIII	CATG	5 cut(s)	332, 515, 605, 676, 761
NlaIV	GGNNCC	2 cut(s)	295, 943
NmuCI	GTSAC	4 cut(s)	39, 376, 746, 977
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	1 cut(s)	605
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	637
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	2 cut(s)	342, 906
PfeI	GAWTC	2 cut(s)	175, 539
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	126, 354, 565, 880, 892
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	781, 999
PspGI	CCWGG	2 cut(s)	781, 999
PspN4I	GGNNCC	2 cut(s)	295, 943
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	941
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
SatI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
Sau3AI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	783, 1001
SduI	GDGCHC	3 cut(s)	216, 592, 820
SetI	ASST	7 cut(s)	133, 151, 375, 453, 500, 551, 1013
SfaNI	GCATC	3 cut(s)	52, 171, 646
SfcI	CTRYAG	2 cut(s)	298, 582
SinI	GGWCC	1 cut(s)	34
SmiI	ATTTAAAT	1 cut(s)	931
SmiMI	CAYNNNNRTG	1 cut(s)	650
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	5 cut(s)	191, 353, 790, 849, 924
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	781, 999
SwaI	ATTTAAAT	1 cut(s)	931
TaaI	ACNGT	2 cut(s)	382, 844
TaqI	TCGA	3 cut(s)	151, 173, 664
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	175, 539
Tru1I	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
Tru9I	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
TscAI	CASTG	3 cut(s)	64, 387, 652
TseFI	GTSAC	4 cut(s)	39, 376, 746, 977
TseI	GCWGC	4 cut(s)	124, 563, 878, 890
Tsp45I	GTSAC	4 cut(s)	39, 376, 746, 977
TspDTI	ATGAA	8 cut(s)	17, 107, 114, 212, 461, 500, 528, 689
TspRI	CASTG	3 cut(s)	64, 387, 652
Van91I	CCANNNNNTGG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	4, 154, 280
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	342, 906
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.