Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Reverse (-)

3360320 .. 3362103

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG043300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATTTTTCTGATCAAACATCGTTTATGCCGGTCCAATCACTTTATGTTGGAGGCAGTGATGCTGTTAATTGCTGGCCTCCTTTCCCTATGAACAATGAAGATCACCATTCTCAGTTTGAGCAGCAAGCTCCACCCTTTAAGAGACCTCGAAATTCCGAAGAACCCCAATCGAATCCGATGCCATACCCGCCTATGAACAACTCTAGAGTGCACCCACCGAATGCTCCGGTTAATAGAGGAGCAAACAACATTTTTTACAAGACTCGTCTATGTGCAAATTTTAAGAATGGTTCCTGTAGGAATGGGGAGAATTGCAACTATGCACATGGCATTGAAGACATTCGCCAGCCGCCTCCCAATTGGCAAGAGCTTGTCACAGTGCGCGACGAGGATAGGCCACTAACTGGTAATTGGGAGGATGATCAGAAGATAATTCACAGGATGAAGCTGTGCAAGAAGTTTAATAACGGCGAGGAGTGTCCTTATGGAGATAGGTGTAACTTTCTTCATGAAGAACCGGCAAAGTTTAGGGAGGATTCGGGTAGGTATAGGGAGAACGCAGCAATCAGCATTGGGACTACAGGAGCACCAATGACACATGTGAGTAGCACTAATCATTCTGAGGATAATAGGCCTGTGAACACTGGTATGGATGCATTTCGAGTAAACATGAAGCCTTATTGGAAGACTAAGATATGTAATAAGTGGGAGCAAACGGGAAAATGTCCATTTGGTGAGAAGTGTCACTTTGCTCATGGGCAAGCAGAGTTACAACTGCCTGGGGTGCGGGTTGAAGCCGAAGTGATGACAAGTGCTCCCATTTCAACGAAACCACAAACTGTTCCCGCTAATGATCCATCTACAATTGCAATGGCAGCAATTCCTGCTGCTGTAAACGAAGAAGTTCAGGGTAAGAAGTGCGGATTTAAATGGAGAGGATCCAAGAAGATCAATCAAATCAATCGCATTTATGGTGACTGGCTTGATGATGTCCCCCTGGTGGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

337

Amino Acids

38.15

Weight (kDa)

6.79

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_UNK	PF25427	86 - 118	8.6e-07	UNK-like, CCCH zinc finger
zf-CCCH	PF00642	87 - 111	1.5e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	149 - 172	1.3e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	150 - 171	1.1e-06	CCCH-type zinc finger
zf-CCCH	PF00642	229 - 255	1.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	230 - 253	1.2e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	1 cut(s)	387
AciI	CCGC	5 cut(s)	191, 353, 790, 849, 924
AclWI	GGATC	3 cut(s)	851, 936, 949
AcsI	RAATTY	3 cut(s)	4, 154, 280
AfiI	CCNNNNNNNGG	2 cut(s)	407, 1003
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	338, 797, 828
AjnI	CCWGG	2 cut(s)	781, 999
AluBI	AGCT	4 cut(s)	131, 373, 451, 1011
AluI	AGCT	4 cut(s)	131, 373, 451, 1011
Alw21I	GWGCWC	3 cut(s)	216, 592, 820
Alw26I	GTCTC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	851, 936, 949
AoxI	GGCC	3 cut(s)	77, 398, 635
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	4 cut(s)	124, 563, 878, 890
ApoI	RAATTY	3 cut(s)	4, 154, 280
Asp700I	GAANNNNTTC	2 cut(s)	342, 906
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	98, 749, 989
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	941
BbsI	GAAGAC	2 cut(s)	345, 695
Bbv12I	GWGCWC	3 cut(s)	216, 592, 820
BbvI	GCAGC	4 cut(s)	136, 575, 877, 890
BccI	CCATC	1 cut(s)	868
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BciT130I	CCWGG	2 cut(s)	783, 1001
BclI	TGATCA	2 cut(s)	13, 424
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	298, 582
BisI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
BlsI	GCNGC	5 cut(s)	126, 354, 565, 880, 892
Bme1390I	CCNGG	2 cut(s)	783, 1001
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	295, 943
BmrFI	CCNGG	2 cut(s)	783, 1001
BmsI	GCATC	3 cut(s)	52, 171, 646
BpiI	GAAGAC	2 cut(s)	345, 695
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	782, 999
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 1003
Bse118I	RCCGGY	2 cut(s)	31, 520
Bse1I	ACTGG	3 cut(s)	412, 652, 986
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	2 cut(s)	783, 1001
BseDI	CCNNGG	2 cut(s)	782, 999
BseGI	GGATG	3 cut(s)	427, 450, 661
BseLI	CCNNNNNNNGG	2 cut(s)	407, 1003
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	128, 615
BseNI	ACTGG	3 cut(s)	412, 652, 986
BseRI	GAGGAG	2 cut(s)	255, 491
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	136, 575, 877, 890
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	79, 400, 637
BsiHKAI	GWGCWC	3 cut(s)	216, 592, 820
BsiSI	CCGG	3 cut(s)	32, 230, 521
BslFI	GGGAC	2 cut(s)	592, 980
BslI	CCNNNNNNNGG	2 cut(s)	407, 1003
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	592, 980
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	79, 400, 637
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	3 cut(s)	216, 592, 820
Bsp143I	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
BspACI	CCGC	5 cut(s)	191, 353, 790, 849, 924
BspANI	GGCC	3 cut(s)	79, 400, 637
BspCNI	CTCAG	2 cut(s)	127, 616
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	295, 943
BspPI	GGATC	3 cut(s)	851, 936, 949
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	879
BsrFI	RCCGGY	2 cut(s)	31, 520
BsrI	ACTGG	3 cut(s)	412, 652, 986
BssAI	RCCGGY	2 cut(s)	31, 520
BssECI	CCNNGG	2 cut(s)	782, 999
BssMI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
Bst2UI	CCWGG	2 cut(s)	783, 1001
Bst4CI	ACNGT	2 cut(s)	382, 844
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstC8I	GCNNGC	4 cut(s)	77, 129, 350, 765
BstDEI	CTNAG	3 cut(s)	114, 624, 693
BstF5I	GGATG	3 cut(s)	427, 450, 661
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	6 cut(s)	16, 106, 427, 859, 944, 954
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 787, 878, 887
BstNI	CCWGG	2 cut(s)	783, 1001
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	781, 999
BstSFI	CTRYAG	2 cut(s)	298, 582
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	136, 575, 877, 890
BstV2I	GAAGAC	2 cut(s)	345, 695
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	3 cut(s)	79, 400, 637
BtsCI	GGATG	3 cut(s)	427, 450, 661
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 387, 645
Cac8I	GCNNGC	4 cut(s)	77, 129, 350, 765
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	2 cut(s)	31, 520
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	5 cut(s)	329, 512, 602, 673, 758
DdeI	CTNAG	3 cut(s)	114, 624, 693
DpnI	GATC	6 cut(s)	15, 105, 426, 858, 943, 953
DpnII	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
DraI	TTTAAA	1 cut(s)	931
Eco147I	AGGCCT	1 cut(s)	637
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	781, 999
EcoT22I	ATGCAT	1 cut(s)	661
FaeI	CATG	5 cut(s)	332, 515, 605, 676, 761
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	2 cut(s)	592, 980
FatI	CATG	5 cut(s)	328, 511, 601, 672, 757
FauI	CCCGC	3 cut(s)	198, 783, 856
FbaI	TGATCA	2 cut(s)	13, 424
Fnu4HI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
FokI	GGATG	3 cut(s)	434, 457, 668
Fsp4HI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
HaeIII	GGCC	3 cut(s)	79, 400, 637
HapII	CCGG	3 cut(s)	32, 230, 521
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	5 cut(s)	332, 515, 605, 676, 761
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	175, 265, 539
HpaII	CCGG	3 cut(s)	32, 230, 521
HphI	GGTGA	3 cut(s)	98, 749, 989
Hpy166II	GTNNAC	4 cut(s)	214, 643, 670, 898
Hpy188I	TCNGA	5 cut(s)	13, 160, 180, 429, 625
Hpy188III	TCNNGA	2 cut(s)	207, 512
Hpy8I	GTNNAC	4 cut(s)	214, 643, 670, 898
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	382, 844
HpyCH4V	TGCA	7 cut(s)	214, 278, 318, 326, 456, 659, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 787, 878, 887
HpyF3I	CTNAG	3 cut(s)	114, 624, 693
Hsp92II	CATG	5 cut(s)	332, 515, 605, 676, 761
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	2 cut(s)	13, 424
Kzo9I	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
LmnI	GCTCC	6 cut(s)	136, 232, 242, 587, 712, 823
Lsp1109I	GCAGC	4 cut(s)	136, 575, 877, 890
LweI	GCATC	3 cut(s)	52, 171, 646
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	5 cut(s)	376, 500, 746, 771, 977
MalI	GATC	6 cut(s)	15, 105, 426, 858, 943, 953
MboI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
MboII	GAAGA	9 cut(s)	113, 173, 350, 442, 500, 527, 700, 914, 961
MfeI	CAATTG	2 cut(s)	361, 867
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	3 cut(s)	216, 592, 820
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	2 cut(s)	342, 906
MseI	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	3 cut(s)	32, 230, 521
MspR9I	CCNGG	2 cut(s)	783, 1001
MunI	CAATTG	2 cut(s)	361, 867
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	783, 1001
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	190, 787, 878, 887
NdeII	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
NlaIII	CATG	5 cut(s)	332, 515, 605, 676, 761
NlaIV	GGNNCC	2 cut(s)	295, 943
NmuCI	GTSAC	3 cut(s)	376, 746, 977
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	1 cut(s)	605
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	637
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	2 cut(s)	342, 906
PfeI	GAWTC	2 cut(s)	175, 539
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	126, 354, 565, 880, 892
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	781, 999
PspGI	CCWGG	2 cut(s)	781, 999
PspN4I	GGNNCC	2 cut(s)	295, 943
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	941
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
SatI	GCNGC	5 cut(s)	125, 353, 564, 879, 891
Sau3AI	GATC	6 cut(s)	13, 103, 424, 856, 941, 951
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	783, 1001
SduI	GDGCHC	3 cut(s)	216, 592, 820
SetI	ASST	7 cut(s)	133, 151, 375, 453, 500, 551, 1013
SfaNI	GCATC	3 cut(s)	52, 171, 646
SfcI	CTRYAG	2 cut(s)	298, 582
SinI	GGWCC	1 cut(s)	34
SmiI	ATTTAAAT	1 cut(s)	931
SmiMI	CAYNNNNRTG	1 cut(s)	650
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	5 cut(s)	191, 353, 790, 849, 924
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	781, 999
SwaI	ATTTAAAT	1 cut(s)	931
TaaI	ACNGT	2 cut(s)	382, 844
TaqI	TCGA	3 cut(s)	151, 173, 664
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	175, 539
Tru1I	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
Tru9I	TTAA	6 cut(s)	69, 141, 234, 285, 465, 930
TscAI	CASTG	3 cut(s)	64, 387, 652
TseFI	GTSAC	3 cut(s)	376, 746, 977
TseI	GCWGC	4 cut(s)	124, 563, 878, 890
Tsp45I	GTSAC	3 cut(s)	376, 746, 977
TspDTI	ATGAA	8 cut(s)	17, 107, 114, 212, 461, 500, 528, 689
TspRI	CASTG	3 cut(s)	64, 387, 652
Van91I	CCANNNNNTGG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	4, 154, 280
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	342, 906
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.