Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Reverse (-)

1885920 .. 1888101

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTGAGAATTGTAACTATGCACATGGCATTGAGGATATCCGCCATCCCCCGCCCAATTGGCAAGAACTTGTTTCTGTGCGTGAAGAAGATCGACCATTGCCTGGTAATTGGGATGATCGATCAGAAAATAATCCACAGGATGAAGCTGTGCAAAAAGTTTTATAACGGGGAGGAGTGTCCTTATGGAGATAGATGTAACTTTCTTCATGAAGATCCGGCAAAGTTTAGGGACGATTCGGGTAGGTTTAGGGAGAACACAGCAATAAGCATTGGAACTACAGGGCCACCAGTGCCTCATGGGAGTGGCTCCAATCATCCTGAGGAAAATAGGCTTGTAAACGCGGGTATGGATGCTTTGCGGGGAAATGTGAAGCCAGTGTATTGGAAGACAAAGTTATGTAATAAATGGGAGACAACGGGTAAATGCCCCTTCGGCGAGAAGTGTCACTTTGCTCATGGGCTAACAGAGTTGCAAGCTCCCGGTGGACGCACCGTTGAGGCAGAATTTCTAAGTCCCCTTCCCTTTCCAACACCCCAAGTTGTTTCTGCTGTCAACTCATCTGCAACTGTAATAGCCGCACTGCCTGCTTTAAATGAAGAAGGGGGGCAGAAGAAGAAGGGCATGCTAAAATGGAAAGGGTCCAAGAAGATCGATCGCATATACGCTGACTGGCTTGATGATGTCCCGCTGGTGCACCAGCACAACTTAGTGGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

241

Amino Acids

26.75

Weight (kDa)

9.08

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccII	CGCG	1 cut(s)	344
AciI	CCGC	6 cut(s)	42, 52, 344, 361, 579, 689
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	148, 479, 720
AluI	AGCT	3 cut(s)	148, 479, 720
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	284
ApaLI	GTGCAC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	284, 642
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	642
AxyI	CCTNAGG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	699
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	279
BglI	GCCNNNNNGGC	2 cut(s)	60, 435
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme1390I	CCNGG	2 cut(s)	104, 483
Bme18I	GGWCC	1 cut(s)	642
BmgT120I	GGNCC	2 cut(s)	284, 642
BmiI	GGNNCC	2 cut(s)	310, 643
BmrFI	CCNGG	2 cut(s)	104, 483
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	483
Bsa29I	ATCGAT	2 cut(s)	120, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	290, 377, 677
Bse21I	CCTNAGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	104
BseCI	ATCGAT	2 cut(s)	120, 654
BseGI	GGATG	5 cut(s)	45, 120, 147, 316, 358
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	290, 377, 677
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	1 cut(s)	286
BshVI	ATCGAT	2 cut(s)	120, 654
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	218, 483
BslFI	GGGAC	3 cut(s)	245, 501, 671
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	3 cut(s)	245, 501, 671
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
BspACI	CCGC	6 cut(s)	42, 52, 344, 361, 579, 689
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	2 cut(s)	120, 654
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	310, 643
BspPI	GGATC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	290, 377, 677
BssMI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	496, 571
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	477, 588, 626
BstDEI	CTNAG	3 cut(s)	321, 512, 709
BstF5I	GGATG	5 cut(s)	45, 120, 147, 316, 358
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	6 cut(s)	93, 120, 124, 217, 654, 658
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 292, 435, 587
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	2 cut(s)	102, 481
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	1 cut(s)	344
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	2 cut(s)	120, 654
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	286
BsuTUI	ATCGAT	2 cut(s)	120, 654
BtsCI	GGATG	5 cut(s)	45, 120, 147, 316, 358
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	3 cut(s)	297, 384, 581
Cac8I	GCNNGC	3 cut(s)	477, 588, 626
CciI	TCATGA	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	284, 642
ClaI	ATCGAT	2 cut(s)	120, 654
CseI	GACGC	1 cut(s)	498
CviAII	CATG	5 cut(s)	25, 209, 299, 458, 625
DdeI	CTNAG	3 cut(s)	321, 512, 709
DpnI	GATC	6 cut(s)	92, 119, 123, 216, 653, 657
DpnII	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
DraI	TTTAAA	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	39
FaeI	CATG	5 cut(s)	28, 212, 302, 461, 628
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	3 cut(s)	245, 501, 671
FatI	CATG	5 cut(s)	24, 208, 298, 457, 624
FauI	CCCGC	4 cut(s)	59, 337, 354, 696
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	5 cut(s)	32, 127, 154, 303, 365
Fsp4HI	GCNGC	1 cut(s)	579
GluI	GCNGC	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	2 cut(s)	218, 483
HgaI	GACGC	1 cut(s)	498
Hin1II	CATG	5 cut(s)	28, 212, 302, 461, 628
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	218, 483
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	340, 488, 556, 697
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	209, 320
Hpy8I	GTNNAC	4 cut(s)	340, 488, 556, 697
HpyAV	CCTTC	4 cut(s)	442, 530, 596, 613
HpyCH4III	ACNGT	2 cut(s)	496, 571
HpyCH4V	TGCA	5 cut(s)	22, 153, 475, 566, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 292, 435, 587
HpyF3I	CTNAG	3 cut(s)	321, 512, 709
Hsp92II	CATG	5 cut(s)	28, 212, 302, 461, 628
Kzo9I	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
LmnI	GCTCC	2 cut(s)	314, 484
LweI	GCATC	1 cut(s)	343
MaeIII	GTNAC	3 cut(s)	13, 197, 446
MalI	GATC	6 cut(s)	92, 119, 123, 216, 653, 657
MboI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
MboII	GAAGA	9 cut(s)	97, 100, 197, 224, 400, 611, 625, 628, 661
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	4 cut(s)	9, 57, 108, 506
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	5 cut(s)	27, 166, 306, 316, 493
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	2 cut(s)	218, 483
MspR9I	CCNGG	2 cut(s)	104, 483
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	60, 292, 435, 587
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
NlaIII	CATG	5 cut(s)	28, 212, 302, 461, 628
NlaIV	GGNNCC	2 cut(s)	310, 643
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	628
PaeI	GCATGC	1 cut(s)	628
PagI	TCATGA	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	580
Ple19I	CGATCG	1 cut(s)	658
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	310, 643
PspPI	GGNCC	2 cut(s)	284, 642
PsuI	RGATCY	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	6 cut(s)	90, 117, 121, 214, 651, 655
Sau96I	GGNCC	2 cut(s)	284, 642
ScrFI	CCNGG	2 cut(s)	104, 483
SduI	GDGCHC	1 cut(s)	699
SetI	ASST	4 cut(s)	150, 248, 481, 722
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	4 cut(s)	9, 57, 108, 506
SsiI	CCGC	6 cut(s)	42, 52, 344, 361, 579, 689
StyD4I	CCNGG	2 cut(s)	102, 481
TaaI	ACNGT	2 cut(s)	496, 571
TaqI	TCGA	3 cut(s)	93, 120, 654
TasI	AATT	4 cut(s)	9, 57, 108, 506
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	3 cut(s)	297, 384, 588
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	158, 197, 225, 612
TspRI	CASTG	3 cut(s)	297, 384, 588
Van91I	CCANNNNNTGG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	642
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.