Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Reverse (-)

1967955 .. 1970299

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAATTATTCTGATCAAACATCGTTTATGCCGGTCCAATCGCTATATGTTGGAGGCAGTGATGCTGTTAATTGCTGGCCTCCTATTGCTATGAACAATGAAGATCAGCATTCTCAGTTTGAGCAGCAAGGTCCACCCTTTAAGAGGCCTAGAAATTCCGAGGAGCCCCAATCGAATCCAATGCCATATCCGCCAATGAACAATGCTAGATTGCCCCCATCAAATGCTCCGGTTAATAGAGGAGCAAACAACATATTTTACAAGACTCGTCTGTGTGCAAATTTTAAGAATGGTTCGTGTAGGAATGGTGAGAATTGCAACTATGCACATGGCATTGATGACATTCGCCAGCCGCCTCCCAATTGGCAAGAGCTTGTTACCGTGCGTGACGAGGATAGGCCATTAACTGGTAATTGGGAGGATGATCAGAAGATAATTCACAGGATGAAGCTCTGCAAGAAGTTTAATAATGGGGAGGAGTGTCCTTATGGAGACAGGTGTAACTTTCGTCATGAAGAACCAGCAAAGTTTAGGGAGGATTCGAGTAGGTATAGGGAGAATGCAGCAATCAGCATTGGGACAACAGGAGCACCGATGCCACATGCAAGTAGCACTAGTTTGGAGGAGAATAGGCCAAACACTGGTATAAATACCTTCCTAGTAACTCCGAAGCCATATTGGAAGACTAAGATTTGTAATAAGTGGGAGCAAACAGGAAAGTGTCCGTTTGGCGAGAAGTGTCACTTTGCTCATGGGCAAGAAGAGTTACAAGCGCCTGGTATGCGGGTTGAAGCAGAACTGATGGCAAGTGCTCCCATTTCAACGAAACCACAAGCTGTTCCTATTAATGATTCATCTACACTTGCAATGGCAGCAATGCCTGCTGCTGTAAACGAAGAAGTGCAGGGTAAGAAGTGCGGATTTAAATGGAGAGGATCCATGAAGATCAAGCAGATCAATCGCATATATGGTGACTGGCTTGATGATGTCCCGCTGGTGGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

336

Amino Acids

37.83

Weight (kDa)

6.67

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_UNK	PF25427	86 - 118	7.8e-07	UNK-like, CCCH zinc finger
zf-CCCH	PF00642	87 - 111	1.4e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	150 - 171	1.9e-06	CCCH-type zinc finger
zf-CCCH	PF00642	227 - 253	1.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	228 - 251	1.2e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	407, 641
AciI	CCGC	5 cut(s)	191, 353, 784, 918, 992
AclWI	GGATC	2 cut(s)	930, 943
AcsI	RAATTY	2 cut(s)	154, 280
AfiI	CCNNNNNNNGG	4 cut(s)	144, 407, 641, 997
AgsI	TTSAA	2 cut(s)	791, 822
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	4 cut(s)	373, 451, 836, 1005
AluI	AGCT	4 cut(s)	373, 451, 836, 1005
Alw21I	GWGCWC	2 cut(s)	592, 814
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	930, 943
AoxI	GGCC	4 cut(s)	77, 146, 398, 632
ApeKI	GCWGC	4 cut(s)	124, 563, 872, 884
ApoI	RAATTY	2 cut(s)	154, 280
AseI	ATTAAT	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	775
AspS9I	GGNCC	2 cut(s)	34, 131
AsuHPI	GGTGA	2 cut(s)	320, 983
AvaII	GGWCC	2 cut(s)	34, 131
BamHI	GGATCC	1 cut(s)	935
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	592, 814
BbvI	GCAGC	4 cut(s)	136, 575, 871, 884
BccI	CCATC	2 cut(s)	226, 796
BcgI	CGANNNNNNTGC	4 cut(s)	163, 197, 941, 975
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	2 cut(s)	13, 424
BcoDI	GTCTC	1 cut(s)	486
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	4 cut(s)	150, 207, 615, 659
BfoI	RGCGCY	1 cut(s)	776
BisI	GCNGC	5 cut(s)	125, 353, 564, 873, 885
BlsI	GCNGC	5 cut(s)	126, 354, 565, 874, 886
Bme1390I	CCNGG	1 cut(s)	777
Bme18I	GGWCC	2 cut(s)	34, 131
BmgT120I	GGNCC	2 cut(s)	34, 131
BmiI	GGNNCC	2 cut(s)	165, 937
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	52, 585
BpiI	GAAGAC	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 407, 641, 997
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	412, 646, 980
Bse3DI	GCAATG	2 cut(s)	873, 882
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	427, 450
BseLI	CCNNNNNNNGG	4 cut(s)	144, 407, 641, 997
BseMI	GCAATG	2 cut(s)	873, 882
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	412, 646, 980
BseRI	GAGGAG	4 cut(s)	176, 255, 491, 638
BseXI	GCAGC	4 cut(s)	136, 575, 871, 884
BsgI	GTGCAG	1 cut(s)	923
BshFI	GGCC	4 cut(s)	79, 148, 400, 634
BsiHKAI	GWGCWC	2 cut(s)	592, 814
BsiSI	CCGG	2 cut(s)	32, 230
BslFI	GGGAC	2 cut(s)	592, 974
BslI	CCNNNNNNNGG	4 cut(s)	144, 407, 641, 997
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	592, 974
BsmI	GAATGC	2 cut(s)	109, 565
BsnI	GGCC	4 cut(s)	79, 148, 400, 634
Bsp1286I	GDGCHC	3 cut(s)	168, 592, 814
Bsp143I	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
BspACI	CCGC	5 cut(s)	191, 353, 784, 918, 992
BspANI	GGCC	4 cut(s)	79, 148, 400, 634
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	165, 937
BspPI	GGATC	2 cut(s)	930, 943
BsrDI	GCAATG	2 cut(s)	873, 882
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	3 cut(s)	412, 646, 980
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	3 cut(s)	77, 350, 882
BstDEI	CTNAG	2 cut(s)	114, 687
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	427, 450
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	6 cut(s)	16, 106, 427, 938, 948, 957
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 781, 872, 881
BstNI	CCWGG	1 cut(s)	777
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	775
BstV1I	GCAGC	4 cut(s)	136, 575, 871, 884
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	935
BstYI	RGATCY	1 cut(s)	935
BsuRI	GGCC	4 cut(s)	79, 148, 400, 634
BtsCI	GGATG	2 cut(s)	427, 450
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 639
Cac8I	GCNNGC	3 cut(s)	77, 350, 882
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	775
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	34, 131
CviAII	CATG	5 cut(s)	329, 512, 602, 752, 940
DdeI	CTNAG	2 cut(s)	114, 687
DpnI	GATC	6 cut(s)	15, 105, 426, 937, 947, 956
DpnII	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
DraI	TTTAAA	1 cut(s)	925
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
EciI	GGCGGA	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	34, 131
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	5 cut(s)	332, 515, 605, 755, 943
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	2 cut(s)	592, 974
FatI	CATG	5 cut(s)	328, 511, 601, 751, 939
FauI	CCCGC	2 cut(s)	777, 999
FbaI	TGATCA	2 cut(s)	13, 424
Fnu4HI	GCNGC	5 cut(s)	125, 353, 564, 873, 885
FokI	GGATG	2 cut(s)	434, 457
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	125, 353, 564, 873, 885
FspBI	CTAG	4 cut(s)	150, 207, 615, 659
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	5 cut(s)	125, 353, 564, 873, 885
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	4 cut(s)	79, 148, 400, 634
HapII	CCGG	2 cut(s)	32, 230
HhaI	GCGC	1 cut(s)	775
Hin1II	CATG	5 cut(s)	332, 515, 605, 755, 943
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HinfI	GANTC	4 cut(s)	175, 265, 539, 851
HpaII	CCGG	2 cut(s)	32, 230
HphI	GGTGA	2 cut(s)	320, 983
Hpy166II	GTNNAC	2 cut(s)	134, 892
Hpy188I	TCNGA	4 cut(s)	13, 160, 429, 669
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	134, 892
HpyAV	CCTTC	1 cut(s)	664
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	8 cut(s)	278, 318, 326, 456, 563, 605, 866, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 781, 872, 881
HpyF3I	CTNAG	2 cut(s)	114, 687
Hsp92II	CATG	5 cut(s)	332, 515, 605, 755, 943
HspAI	GCGC	1 cut(s)	773
Ksp22I	TGATCA	2 cut(s)	13, 424
Kzo9I	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
LmnI	GCTCC	6 cut(s)	163, 232, 242, 587, 706, 817
Lsp1109I	GCAGC	4 cut(s)	136, 575, 871, 884
LweI	GCATC	2 cut(s)	52, 585
MaeI	CTAG	4 cut(s)	150, 207, 615, 659
MaeIII	GTNAC	7 cut(s)	376, 386, 500, 661, 740, 765, 971
MalI	GATC	6 cut(s)	15, 105, 426, 937, 947, 956
MboI	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
MboII	GAAGA	7 cut(s)	113, 442, 527, 694, 773, 908, 955
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	1 cut(s)	935
MhlI	GDGCHC	3 cut(s)	168, 592, 814
MluCI	AATT	8 cut(s)	4, 70, 154, 280, 313, 361, 412, 435
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	31
MseI	TTAA	8 cut(s)	69, 141, 234, 285, 404, 465, 846, 924
MspA1I	CMGCKG	1 cut(s)	994
MspI	CCGG	2 cut(s)	32, 230
MspR9I	CCNGG	1 cut(s)	777
MunI	CAATTG	1 cut(s)	361
Mva1269I	GAATGC	2 cut(s)	109, 565
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	4 cut(s)	190, 781, 872, 881
NdeII	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
NlaIII	CATG	5 cut(s)	332, 515, 605, 755, 943
NlaIV	GGNNCC	2 cut(s)	165, 937
NmuCI	GTSAC	3 cut(s)	386, 740, 971
NspI	RCATGY	1 cut(s)	605
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	148
PctI	GAATGC	2 cut(s)	109, 565
PfeI	GAWTC	3 cut(s)	175, 539, 851
PflMI	CCANNNNNTGG	2 cut(s)	407, 641
PkrI	GCNGC	5 cut(s)	126, 354, 565, 874, 886
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	2 cut(s)	165, 937
PspPI	GGNCC	2 cut(s)	34, 131
PsuI	RGATCY	1 cut(s)	935
SaqAI	TTAA	8 cut(s)	69, 141, 234, 285, 404, 465, 846, 924
SatI	GCNGC	5 cut(s)	125, 353, 564, 873, 885
Sau3AI	GATC	6 cut(s)	13, 103, 424, 935, 945, 954
Sau96I	GGNCC	2 cut(s)	34, 131
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	777
SduI	GDGCHC	3 cut(s)	168, 592, 814
SetI	ASST	8 cut(s)	133, 375, 453, 500, 551, 656, 838, 1007
SfaNI	GCATC	2 cut(s)	52, 585
SinI	GGWCC	2 cut(s)	34, 131
SmiI	ATTTAAAT	1 cut(s)	925
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	8 cut(s)	4, 70, 154, 280, 313, 361, 412, 435
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	5 cut(s)	191, 353, 784, 918, 992
SspMI	CTAG	4 cut(s)	150, 207, 615, 659
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	775
SwaI	ATTTAAAT	1 cut(s)	925
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	173, 542
TasI	AATT	8 cut(s)	4, 70, 154, 280, 313, 361, 412, 435
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	3 cut(s)	175, 539, 851
Tru1I	TTAA	8 cut(s)	69, 141, 234, 285, 404, 465, 846, 924
Tru9I	TTAA	8 cut(s)	69, 141, 234, 285, 404, 465, 846, 924
TscAI	CASTG	2 cut(s)	64, 646
TseFI	GTSAC	3 cut(s)	386, 740, 971
TseI	GCWGC	4 cut(s)	124, 563, 872, 884
Tsp45I	GTSAC	3 cut(s)	386, 740, 971
TspDTI	ATGAA	8 cut(s)	17, 107, 114, 212, 461, 528, 843, 956
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	64, 646
Van91I	CCANNNNNTGG	2 cut(s)	407, 641
VpaK11BI	GGWCC	2 cut(s)	34, 131
VspI	ATTAAT	1 cut(s)	846
XagI	CCTNNNNNAGG	1 cut(s)	142
XapI	RAATTY	2 cut(s)	154, 280
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	4 cut(s)	150, 207, 615, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.