Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016750.1

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Forward (+)

9969 .. 11435

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016750.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgccggtccagtcactttatgttggaggcagtgatgctgttaattgctggcctcctttccctatgaacaatgaagatcaccattctcagtttgagcagcaagctccaccctttaagagacctcgaaattccgaagaaccccaatcgaatccgatgccatacccgcctatgaacaactctagagtgcacccaccgaatgctccggttaatagaggagcaaacaacattttttacaagactcgtctgtgtgcaaattttaagaatggttcctgtaggaatggtgagaattgcaactatgcacatggcattgaagacattcgccagccgcctcccaattggcaagagcttgtcacagtgcgcgacgaggataggccactaactggtaattgggaggatgatcagaagataattcacaggatgaagctgtgcaagaagtttaataacggcgaggagtgtccttatggagataggtgtaactttcttcatgaagaaccggcaaagtttagggaggattcgggtaggtatagggagaacgcagcgatcagcattgggactacaggagcaccaatgacacatgtgagtagcactaatcattccgaggataataggcctgtgaacactggtatggatgcatttcgagtaaacatgaagccttattggaagactaagatatgtaataagtgggagcaaacgggaaaatgtccatttggtgagaagtgtcactttgctcatgggcaagcagagttacaagtgcctggggtgcgggttgaagcagaagtgatgacaagtgctcccatttcaacgaaaccacaaactgttcccgctaatgatccatctacaattgcaatggcagcaattcctgctgctgtaaacgaagaagttcagggtaagaagtgcggatttaaatggagaggatccaagaagatcaatcaaatcaatcgcatatatggtgactggcttgatgatgtccccctggtggagagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

328

Amino Acids

37.08

Weight (kDa)

7.12

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccII	CGCG	1 cut(s)	360
AciI	CCGC	5 cut(s)	164, 326, 763, 822, 897
AclWI	GGATC	3 cut(s)	824, 909, 922
AcsI	RAATTY	2 cut(s)	127, 253
AfiI	CCNNNNNNNGG	2 cut(s)	380, 976
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	3 cut(s)	311, 770, 801
AjnI	CCWGG	2 cut(s)	754, 972
AluBI	AGCT	4 cut(s)	104, 346, 424, 984
AluI	AGCT	4 cut(s)	104, 346, 424, 984
Alw21I	GWGCWC	3 cut(s)	189, 565, 793
Alw26I	GTCTC	1 cut(s)	112
Alw44I	GTGCAC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	824, 909, 922
AoxI	GGCC	3 cut(s)	50, 371, 608
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	97, 536, 851, 863
ApoI	RAATTY	2 cut(s)	127, 253
Asp700I	GAANNNNTTC	2 cut(s)	315, 879
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	4 cut(s)	71, 293, 722, 962
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	914
BbsI	GAAGAC	2 cut(s)	318, 668
Bbv12I	GWGCWC	3 cut(s)	189, 565, 793
BbvI	GCAGC	4 cut(s)	109, 548, 850, 863
BccI	CCATC	1 cut(s)	841
BceAI	ACGGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	756, 974
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	2 cut(s)	271, 555
BisI	GCNGC	5 cut(s)	98, 326, 537, 852, 864
BlsI	GCNGC	5 cut(s)	99, 327, 538, 853, 865
Bme1390I	CCNGG	2 cut(s)	756, 974
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	268, 916
BmrFI	CCNGG	2 cut(s)	756, 974
BmsI	GCATC	3 cut(s)	25, 144, 619
BpiI	GAAGAC	2 cut(s)	318, 668
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	597, 755, 972
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 976
Bse118I	RCCGGY	2 cut(s)	4, 493
Bse1I	ACTGG	4 cut(s)	10, 385, 625, 959
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	756, 974
BseDI	CCNNGG	3 cut(s)	597, 755, 972
BseGI	GGATG	3 cut(s)	400, 423, 634
BseLI	CCNNNNNNNGG	2 cut(s)	380, 976
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	4 cut(s)	10, 385, 625, 959
BseRI	GAGGAG	2 cut(s)	228, 464
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	109, 548, 850, 863
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	52, 373, 610
BsiHKAI	GWGCWC	3 cut(s)	189, 565, 793
BsiSI	CCGG	3 cut(s)	5, 203, 494
BslFI	GGGAC	2 cut(s)	565, 953
BslI	CCNNNNNNNGG	2 cut(s)	380, 976
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	565, 953
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	52, 373, 610
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	189, 565, 793
Bsp143I	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
BspACI	CCGC	5 cut(s)	164, 326, 763, 822, 897
BspANI	GGCC	3 cut(s)	52, 373, 610
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	268, 916
BspPI	GGATC	3 cut(s)	824, 909, 922
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	2 cut(s)	4, 493
BsrI	ACTGG	4 cut(s)	10, 385, 625, 959
BssAI	RCCGGY	2 cut(s)	4, 493
BssECI	CCNNGG	3 cut(s)	597, 755, 972
BssMI	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
Bst2UI	CCWGG	2 cut(s)	756, 974
Bst4CI	ACNGT	2 cut(s)	355, 817
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	4 cut(s)	50, 102, 323, 738
BstDEI	CTNAG	2 cut(s)	87, 666
BstF5I	GGATG	3 cut(s)	400, 423, 634
BstFNI	CGCG	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	6 cut(s)	79, 400, 543, 832, 917, 927
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 760, 851, 860
BstNI	CCWGG	2 cut(s)	756, 974
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	754, 972
BstSFI	CTRYAG	2 cut(s)	271, 555
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	109, 548, 850, 863
BstV2I	GAAGAC	2 cut(s)	318, 668
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	3 cut(s)	52, 373, 610
BtsCI	GGATG	3 cut(s)	400, 423, 634
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	3 cut(s)	37, 360, 618
Cac8I	GCNNGC	4 cut(s)	50, 102, 323, 738
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	360
Cfr10I	RCCGGY	2 cut(s)	4, 493
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	5 cut(s)	302, 485, 575, 646, 731
DdeI	CTNAG	2 cut(s)	87, 666
DpnI	GATC	6 cut(s)	78, 399, 542, 831, 916, 926
DpnII	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
DraI	TTTAAA	1 cut(s)	904
Eco147I	AGGCCT	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	754, 972
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	5 cut(s)	305, 488, 578, 649, 734
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	2 cut(s)	565, 953
FatI	CATG	5 cut(s)	301, 484, 574, 645, 730
FauI	CCCGC	3 cut(s)	171, 756, 829
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	98, 326, 537, 852, 864
FokI	GGATG	3 cut(s)	407, 430, 641
Fsp4HI	GCNGC	5 cut(s)	98, 326, 537, 852, 864
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	5 cut(s)	98, 326, 537, 852, 864
HaeIII	GGCC	3 cut(s)	52, 373, 610
HapII	CCGG	3 cut(s)	5, 203, 494
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	5 cut(s)	305, 488, 578, 649, 734
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	148, 238, 512
HpaII	CCGG	3 cut(s)	5, 203, 494
HphI	GGTGA	4 cut(s)	71, 293, 722, 962
Hpy166II	GTNNAC	4 cut(s)	187, 616, 643, 871
Hpy188I	TCNGA	4 cut(s)	133, 153, 402, 598
Hpy188III	TCNNGA	2 cut(s)	180, 485
Hpy8I	GTNNAC	4 cut(s)	187, 616, 643, 871
Hpy99I	CGWCG	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	355, 817
HpyCH4V	TGCA	7 cut(s)	187, 251, 291, 299, 429, 632, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 760, 851, 860
HpyF3I	CTNAG	2 cut(s)	87, 666
Hsp92II	CATG	5 cut(s)	305, 488, 578, 649, 734
HspAI	GCGC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
LmnI	GCTCC	6 cut(s)	109, 205, 215, 560, 685, 796
Lsp1109I	GCAGC	4 cut(s)	109, 548, 850, 863
LweI	GCATC	3 cut(s)	25, 144, 619
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	6 cut(s)	12, 349, 473, 719, 744, 950
MalI	GATC	6 cut(s)	78, 399, 542, 831, 916, 926
MboI	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
MboII	GAAGA	9 cut(s)	86, 146, 323, 415, 473, 500, 673, 887, 934
MfeI	CAATTG	2 cut(s)	334, 840
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	3 cut(s)	189, 565, 793
MluCI	AATT	9 cut(s)	43, 127, 253, 286, 334, 385, 408, 840, 855
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	4
Mph1103I	ATGCAT	1 cut(s)	634
MroXI	GAANNNNTTC	2 cut(s)	315, 879
MseI	TTAA	6 cut(s)	42, 114, 207, 258, 438, 903
MslI	CAYNNNNRTG	1 cut(s)	623
MspI	CCGG	3 cut(s)	5, 203, 494
MspR9I	CCNGG	2 cut(s)	756, 974
MunI	CAATTG	2 cut(s)	334, 840
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	756, 974
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	163, 760, 851, 860
NdeII	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
NlaIII	CATG	5 cut(s)	305, 488, 578, 649, 734
NlaIV	GGNNCC	2 cut(s)	268, 916
NmuCI	GTSAC	4 cut(s)	12, 349, 719, 950
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	578
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	610
PciI	ACATGT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	315, 879
PfeI	GAWTC	2 cut(s)	148, 512
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	5 cut(s)	99, 327, 538, 853, 865
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	754, 972
PspGI	CCWGG	2 cut(s)	754, 972
PspN4I	GGNNCC	2 cut(s)	268, 916
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	914
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	6 cut(s)	42, 114, 207, 258, 438, 903
SatI	GCNGC	5 cut(s)	98, 326, 537, 852, 864
Sau3AI	GATC	6 cut(s)	76, 397, 540, 829, 914, 924
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	756, 974
SduI	GDGCHC	3 cut(s)	189, 565, 793
SetI	ASST	7 cut(s)	106, 124, 348, 426, 473, 524, 986
SfaNI	GCATC	3 cut(s)	25, 144, 619
SfcI	CTRYAG	2 cut(s)	271, 555
SinI	GGWCC	1 cut(s)	7
SmiI	ATTTAAAT	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse9I	AATT	9 cut(s)	43, 127, 253, 286, 334, 385, 408, 840, 855
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	5 cut(s)	164, 326, 763, 822, 897
SspMI	CTAG	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	754, 972
SwaI	ATTTAAAT	1 cut(s)	904
TaaI	ACNGT	2 cut(s)	355, 817
TaqI	TCGA	3 cut(s)	124, 146, 637
TasI	AATT	9 cut(s)	43, 127, 253, 286, 334, 385, 408, 840, 855
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	2 cut(s)	148, 512
Tru1I	TTAA	6 cut(s)	42, 114, 207, 258, 438, 903
Tru9I	TTAA	6 cut(s)	42, 114, 207, 258, 438, 903
TscAI	CASTG	3 cut(s)	37, 360, 625
TseFI	GTSAC	4 cut(s)	12, 349, 719, 950
TseI	GCWGC	4 cut(s)	97, 536, 851, 863
Tsp45I	GTSAC	4 cut(s)	12, 349, 719, 950
TspDTI	ATGAA	7 cut(s)	80, 87, 185, 434, 473, 501, 662
TspRI	CASTG	3 cut(s)	37, 360, 625
Van91I	CCANNNNNTGG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	2 cut(s)	127, 253
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	578
XmnI	GAANNNNTTC	2 cut(s)	315, 879
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.