Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Forward (+)

20670865 .. 20673536

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAATTTTTCTGATCAGACACAATTTATGCCGTCACAAACGCCTTATGCTGGAGGTAGTGATGCAGTAAATTGTTGGCCTCCATTCCCCATGAGTATGAACAATGAAGACCAACATTCTCAGTTTGAACAGCAGCCTTCTCCATTTAAAAGACCCAGAAATTCTGAAGAAAACCAATCAAATCCAATGCCCTACCCACCCATGAACGCTAGGATGCAGCCCCAAAATGCCCCAGTTAACAAGGGAGCAAGCAACATTTTCTATAAGACCCGTTTGTGTGTAAATTTTAAAACCGGCATGTGCAGGAATGGTGAGAACTGCAACTATGCACATGGCATTGAAGACATCCGCCATCCCCCTCCCAATTGGCAAGAACTTGTTTCTGTACGTGAAGAAGATCGACCACCATTGTCCGGTAATTGGGATGATGATCAGAAAATAATCCACCGGATGAAGCTATGCAAGAAGTTTTACAATGGGGAGGAGTGTCCTTATGGAGATAGGTGTAACTTTCTTCATGAAGATCCAGCAAAGTTTAGGGATGATATAAGCAGGTTTAGGGAGAACACAGCAATAAGCATAGGAACTACAGGACCATCGGTGGTACATGGGAGTGGCTCTAATCATTCTGAGGAAAATAGGCTTGTAAGCACGGGTATGGATACTTTCCGTGTAAATATGAAGCCGGTGTATTGGAAGACAAAGTTATGTAATAAGTGGGAGACAACAGGCAAATGCCCCTTTGGCGAGAAATGTCACTTTGCTCACGGCCAAGCAGAGTTACAAGTGCCTGGTGGACGAGTTGAAGCCGAAGTTTTGAGTAGTACACCCATTTCAACAAAACCCCAAGCTGGTCCTGTTAATGATTCCTCTACAACTGCAATGGCAATACTGCCTGCTTCAAATGAAGAAGGGGGCCAGGGTAAGAAGAGGGTACTAAAATGGAAAGGGTCCAAAAAGATCAATCGCATATATGCTGATTGGCTTGATGATGTGCCGCTGGTGCACCAGCAGAACTTGTCCAGCACAGTGGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

347

Amino Acids

39.03

Weight (kDa)

7.12

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	543
AciI	CCGC	2 cut(s)	349, 998
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	3 cut(s)	4, 160, 283
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	4 cut(s)	387, 606, 826, 936
AfiI	CCNNNNNNNGG	4 cut(s)	50, 413, 420, 851
AgsI	TTSAA	5 cut(s)	128, 341, 806, 837, 903
AjnI	CCWGG	2 cut(s)	790, 918
AluBI	AGCT	3 cut(s)	457, 851, 1038
AluI	AGCT	3 cut(s)	457, 851, 1038
Alw21I	GWGCWC	1 cut(s)	1008
Alw26I	GTCTC	1 cut(s)	716
Alw44I	GTGCAC	1 cut(s)	1004
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	3 cut(s)	77, 769, 916
ApaLI	GTGCAC	1 cut(s)	1004
ApeKI	GCWGC	2 cut(s)	133, 217
ApoI	RAATTY	3 cut(s)	4, 160, 283
AspS9I	GGNCC	4 cut(s)	593, 854, 916, 951
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	3 cut(s)	593, 854, 951
BaeGI	GKGCMC	1 cut(s)	1008
BbsI	GAAGAC	3 cut(s)	114, 348, 704
Bbv12I	GWGCWC	1 cut(s)	1008
BbvI	GCAGC	2 cut(s)	145, 229
BccI	CCATC	2 cut(s)	360, 604
BceAI	ACGGC	2 cut(s)	16, 784
BciT130I	CCWGG	2 cut(s)	792, 920
BciVI	GTATCC	1 cut(s)	655
BclI	TGATCA	2 cut(s)	13, 430
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	655
BglI	GCCNNNNNGGC	1 cut(s)	744
BisI	GCNGC	3 cut(s)	134, 218, 998
BlsI	GCNGC	3 cut(s)	135, 219, 999
Bme1390I	CCNGG	2 cut(s)	792, 920
Bme18I	GGWCC	3 cut(s)	593, 854, 951
BmgT120I	GGNCC	4 cut(s)	593, 854, 916, 951
BmiI	GGNNCC	2 cut(s)	917, 952
BmrFI	CCNGG	2 cut(s)	792, 920
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	52, 204
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	3 cut(s)	114, 348, 704
BpmI	CTGGAG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	919
BsaWI	WCCGGW	2 cut(s)	413, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 413, 420, 851
Bse118I	RCCGGY	2 cut(s)	293, 685
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	792, 920
BseDI	CCNNGG	1 cut(s)	919
BseGI	GGATG	6 cut(s)	219, 345, 352, 430, 456, 547
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	4 cut(s)	50, 413, 420, 851
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	134, 621
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	1008
BseXI	GCAGC	2 cut(s)	145, 229
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	79, 771, 918
BsiHKAI	GWGCWC	1 cut(s)	1008
BsiSI	CCGG	4 cut(s)	294, 414, 448, 686
BslI	CCNNNNNNNGG	4 cut(s)	50, 413, 420, 851
BsmAI	GTCTC	1 cut(s)	716
BsnI	GGCC	3 cut(s)	79, 771, 918
Bsp1286I	GDGCHC	1 cut(s)	1008
Bsp143I	GATC	5 cut(s)	13, 397, 430, 523, 960
BspACI	CCGC	2 cut(s)	349, 998
BspANI	GGCC	3 cut(s)	79, 771, 918
BspCNI	CTCAG	2 cut(s)	133, 622
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	917, 952
BspMI	ACCTGC	1 cut(s)	543
BspPI	GGATC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	888
BsrFI	RCCGGY	2 cut(s)	293, 685
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	2 cut(s)	293, 685
BssECI	CCNNGG	1 cut(s)	919
BssMI	GATC	5 cut(s)	13, 397, 430, 523, 960
Bst2UI	CCWGG	2 cut(s)	792, 920
Bst4CI	ACNGT	1 cut(s)	1030
Bst6I	CTCTTC	1 cut(s)	923
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	250, 897
BstDEI	CTNAG	2 cut(s)	120, 630
BstF5I	GGATG	6 cut(s)	219, 345, 352, 430, 456, 547
BstKTI	GATC	5 cut(s)	16, 400, 433, 526, 963
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	5 cut(s)	13, 397, 430, 523, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	744, 1003
BstNI	CCWGG	2 cut(s)	792, 920
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	790, 918
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	1008
BstV1I	GCAGC	2 cut(s)	145, 229
BstV2I	GAAGAC	3 cut(s)	114, 348, 704
BstX2I	RGATCY	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	79, 771, 918
BtsCI	GGATG	6 cut(s)	219, 345, 352, 430, 456, 547
BtsIMutI	CAGTG	1 cut(s)	1035
BveI	ACCTGC	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	250, 897
CciI	TCATGA	1 cut(s)	517
Cfr10I	RCCGGY	2 cut(s)	293, 685
Cfr13I	GGNCC	4 cut(s)	593, 854, 916, 951
Csp6I	GTAC	4 cut(s)	386, 605, 825, 935
CviAII	CATG	6 cut(s)	91, 202, 298, 332, 518, 608
CviQI	GTAC	4 cut(s)	386, 605, 825, 935
DdeI	CTNAG	2 cut(s)	120, 630
DpnI	GATC	5 cut(s)	15, 399, 432, 525, 962
DpnII	GATC	5 cut(s)	13, 397, 430, 523, 960
DraI	TTTAAA	2 cut(s)	148, 289
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	1 cut(s)	923
EarI	CTCTTC	1 cut(s)	923
EciI	GGCGGA	1 cut(s)	338
Eco47I	GGWCC	3 cut(s)	593, 854, 951
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	790, 918
FaeI	CATG	6 cut(s)	94, 205, 301, 335, 521, 611
FatI	CATG	6 cut(s)	90, 201, 297, 331, 517, 607
FbaI	TGATCA	2 cut(s)	13, 430
Fnu4HI	GCNGC	3 cut(s)	134, 218, 998
FokI	GGATG	6 cut(s)	226, 332, 339, 437, 463, 554
Fsp4HI	GCNGC	3 cut(s)	134, 218, 998
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	3 cut(s)	134, 218, 998
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	79, 771, 918
HapII	CCGG	4 cut(s)	294, 414, 448, 686
Hin1II	CATG	6 cut(s)	94, 205, 301, 335, 521, 611
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	866
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	4 cut(s)	294, 414, 448, 686
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	4 cut(s)	238, 797, 827, 1006
Hpy188I	TCNGA	5 cut(s)	13, 18, 166, 435, 631
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	4 cut(s)	238, 797, 827, 1006
HpyAV	CCTTC	2 cut(s)	147, 905
HpyCH4III	ACNGT	1 cut(s)	1030
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	8 cut(s)	65, 217, 303, 321, 329, 462, 881, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	744, 1003
HpyF3I	CTNAG	2 cut(s)	120, 630
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	6 cut(s)	94, 205, 301, 335, 521, 611
Ksp22I	TGATCA	2 cut(s)	13, 430
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	13, 397, 430, 523, 960
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	2 cut(s)	145, 229
LweI	GCATC	2 cut(s)	52, 204
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	4 cut(s)	33, 506, 755, 780
MalI	GATC	5 cut(s)	15, 399, 432, 525, 962
MboI	GATC	5 cut(s)	13, 397, 430, 523, 960
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	1008
MluCI	AATT	7 cut(s)	4, 23, 70, 160, 283, 364, 418
MnlI	CCTC	7 cut(s)	47, 90, 369, 475, 625, 880, 924
MseI	TTAA	4 cut(s)	147, 237, 288, 861
MslI	CAYNNNNRTG	3 cut(s)	95, 612, 656
MspA1I	CMGCKG	1 cut(s)	1000
MspI	CCGG	4 cut(s)	294, 414, 448, 686
MspR9I	CCNGG	2 cut(s)	792, 920
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	792, 920
MwoI	GCNNNNNNNGC	2 cut(s)	744, 1003
NdeII	GATC	5 cut(s)	13, 397, 430, 523, 960
NlaIII	CATG	6 cut(s)	94, 205, 301, 335, 521, 611
NlaIV	GGNNCC	2 cut(s)	917, 952
NmuCI	GTSAC	2 cut(s)	33, 755
NspI	RCATGY	1 cut(s)	301
PagI	TCATGA	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	866
PkrI	GCNGC	3 cut(s)	135, 219, 999
Ppu21I	YACGTR	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	790, 918
PspGI	CCWGG	2 cut(s)	790, 918
PspN4I	GGNNCC	2 cut(s)	917, 952
PspPI	GGNCC	4 cut(s)	593, 854, 916, 951
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	4 cut(s)	387, 606, 826, 936
RsaNI	GTAC	4 cut(s)	386, 605, 825, 935
RseI	CAYNNNNRTG	3 cut(s)	95, 612, 656
SaqAI	TTAA	4 cut(s)	147, 237, 288, 861
SatI	GCNGC	3 cut(s)	134, 218, 998
Sau3AI	GATC	5 cut(s)	13, 397, 430, 523, 960
Sau96I	GGNCC	4 cut(s)	593, 854, 916, 951
ScrFI	CCNGG	2 cut(s)	792, 920
SduI	GDGCHC	1 cut(s)	1008
SetI	ASST	7 cut(s)	58, 391, 459, 506, 557, 853, 1040
SfaNI	GCATC	2 cut(s)	52, 204
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	3 cut(s)	593, 854, 951
SmiMI	CAYNNNNRTG	3 cut(s)	95, 612, 656
Sse9I	AATT	7 cut(s)	4, 23, 70, 160, 283, 364, 418
SsiI	CCGC	2 cut(s)	349, 998
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	790, 918
TaaI	ACNGT	1 cut(s)	1030
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	400
TasI	AATT	7 cut(s)	4, 23, 70, 160, 283, 364, 418
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	1000
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	4 cut(s)	147, 237, 288, 861
Tru9I	TTAA	4 cut(s)	147, 237, 288, 861
TscAI	CASTG	1 cut(s)	1035
TseFI	GTSAC	2 cut(s)	33, 755
TseI	GCWGC	2 cut(s)	133, 217
Tsp45I	GTSAC	2 cut(s)	33, 755
TspDTI	ATGAA	9 cut(s)	17, 113, 120, 218, 467, 506, 534, 695, 921
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	1 cut(s)	1035
VneI	GTGCAC	1 cut(s)	1004
VpaK11BI	GGWCC	3 cut(s)	593, 854, 951
XapI	RAATTY	3 cut(s)	4, 160, 283
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.