Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010344

Physical Location & Seq

Genomic Coordinates Reverse (-)

2714008 .. 2716436

Gene Structure 2429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1035700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAATTTTTCTGATCACTCACAATTTATGCCGCCGCAAACGCCTTACAATGGCGGTGGCAGTGACGCAGTTAATTGCTGGCCGCCTGCATTTTCTGAGAACATGGACGACCAGCATTCTCAGTTTGAGCAGCAACCTTTTAAACGGGCTAGGAATTCTGAAGAAAGCCAATCAAATCCGATGCCATACCCTCCCATGAATATCAGGGTGCAGCAGCCGAATGCGCCGGTTAACAAGGGAGCAAGCAACATTTTCTATAAGACCCGTTTGTGTGTAAATTTTAAATCCGGTATGTGTAGGAATGGTGAGAATTGTAACTATGCACATGGCATTGAAGATATCCGCCATCCCCCGCCCAATTGGCAAGAACTTGTTTCTGTGCGTGAAGAAGATCGACCATTGTCTGGTAATTGGGATGATGATCAGAAAATAATCCACAGGATGAAGCTGTGCAAAAAGTTTTATAATGGGGAGGAGTGTCCTTATGGAGATAGGTGTAACTTTCTTCATGAAGATCCGGCAAAGTTTAGGGATGATTCTGGTAGGTTTAGGGAGAACACAGCAATAAGCATTGGAACTACAGGACCACCAGTGCCTCATGGGGGTGGCTCTAATCATCCTGAGGAAAATAGGCTTGTAAACGTGGGTATGGATGCTTTGCGGGGAAATGTGAAGCCAGTGTATTGGAAGACAAAGTTATGTAATAAATGGGAGACAACGGGTAAATGCCCCTTCGGCGAGAAGTGTCACTTTGCTCACGGGCTAACAGAGTTGCAAGCTCCCGGTGGACGCACCATTGAGGCAGAATTTCTAAGTCCCCTTCCCTTTCCAACACCCCAAGTTGTTTCTGCTGTCAACTCATCTGCAACTGCAATAGCCTCACTGCCTGCTTTAAACGAAGAAGAGGGGCAGAAGAAGAAGGGCATGCTAAAATGGAAAGGGTCCAAGAAGATCAATCGCATATATGCGGACTGGCTTGATGATGTCCCGCTGGTGCACCAGCACAACTTAGTGGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

341

Amino Acids

38.32

Weight (kDa)

6.64

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_UNK	PF25427	85 - 117	7e-07	UNK-like, CCCH zinc finger
zf_CCCH_4	PF18345	91 - 109	7.1e-06	Zinc finger domain
zf-CCCH	PF00642	148 - 170	2e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	149 - 170	9.4e-08	CCCH-type zinc finger
zf-CCCH	PF00642	229 - 254	3.6e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	230 - 253	2.4e-07	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19360 AT3G19360
fragaria_vesca	FvH4_1g03610 FvH4_1g03610
malus_domestica	MD02G1035700.v1.1 MD15G1175900.v1.1
prunus_persica	Prupe.7G239500_v2.0.a1
pyrus_communis	pycom02g02950 pycom15g15790
rosa_chinensis	RchiOBHm_Chr2g0089141
rosa_laevigata	RLG00000015995
rosa_multiflora	Rmu_sc0016750.1_g000003 Rmu_sc0029975.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152210
rosa_rugosa	Rorug01G0487700 Rorug01G0487800
rosa_samantha	Rh2AG043300 Rh2BG042100 Rh2CG043400 Rh2DG042400
rosa_wichuraiana	Rw2G003430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	9 cut(s)	32, 35, 54, 83, 343, 353, 661, 968, 989
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	4 cut(s)	4, 154, 277, 806
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	3 cut(s)	50, 404, 602
AgsI	TTSAA	1 cut(s)	335
AluBI	AGCT	3 cut(s)	448, 779, 1020
AluI	AGCT	3 cut(s)	448, 779, 1020
Alw21I	GWGCWC	1 cut(s)	999
Alw26I	GTCTC	1 cut(s)	707
Alw44I	GTGCAC	1 cut(s)	995
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	1 cut(s)	80
ApaLI	GTGCAC	1 cut(s)	995
ApeKI	GCWGC	3 cut(s)	130, 211, 214
ApoI	RAATTY	4 cut(s)	4, 154, 277, 806
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	584, 942
AsuC2I	CCSGG	1 cut(s)	783
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	584, 942
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	999
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	999
BbvI	GCAGC	3 cut(s)	142, 223, 226
BccI	CCATC	1 cut(s)	354
BclI	TGATCA	2 cut(s)	13, 421
BcnI	CCSGG	1 cut(s)	783
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	579
BglI	GCCNNNNNGGC	2 cut(s)	361, 735
BisI	GCNGC	6 cut(s)	32, 35, 83, 131, 212, 215
BlsI	GCNGC	6 cut(s)	33, 36, 84, 132, 213, 216
Bme1390I	CCNGG	1 cut(s)	783
Bme18I	GGWCC	2 cut(s)	584, 942
BmgT120I	GGNCC	2 cut(s)	584, 942
BmiI	GGNNCC	1 cut(s)	943
BmrFI	CCNGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	171, 643
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 404, 602
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	590, 677, 977
Bse21I	CCTNAGG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	420
BseGI	GGATG	6 cut(s)	346, 421, 447, 538, 616, 658
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	3 cut(s)	50, 404, 602
BseMII	CTCAG	3 cut(s)	87, 134, 612
BseNI	ACTGG	3 cut(s)	590, 677, 977
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	999
BseXI	GCAGC	3 cut(s)	142, 223, 226
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	999
BsiSI	CCGG	4 cut(s)	227, 288, 518, 783
BslFI	GGGAC	2 cut(s)	801, 971
BslI	CCNNNNNNNGG	3 cut(s)	50, 404, 602
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	2 cut(s)	801, 971
BsmI	GAATGC	2 cut(s)	115, 226
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	999
Bsp143I	GATC	5 cut(s)	13, 391, 421, 514, 951
BspACI	CCGC	9 cut(s)	32, 35, 54, 83, 343, 353, 661, 968, 989
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	88, 133, 613
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	943
BspPI	GGATC	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	590, 677, 977
BssAI	RCCGGY	1 cut(s)	226
BssMI	GATC	5 cut(s)	13, 391, 421, 514, 951
Bst6I	CTCTTC	1 cut(s)	897
BstC8I	GCNNGC	6 cut(s)	80, 87, 244, 777, 888, 926
BstDEI	CTNAG	5 cut(s)	96, 120, 621, 812, 1009
BstF5I	GGATG	6 cut(s)	346, 421, 447, 538, 616, 658
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	5 cut(s)	16, 394, 424, 517, 954
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	5 cut(s)	13, 391, 421, 514, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 223, 361, 735
BstNSI	RCATGY	1 cut(s)	928
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	999
BstV1I	GCAGC	3 cut(s)	142, 223, 226
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	6 cut(s)	346, 421, 447, 538, 616, 658
BtsI	GCAGTG	2 cut(s)	67, 881
BtsIMutI	CAGTG	4 cut(s)	67, 597, 684, 881
Cac8I	GCNNGC	6 cut(s)	80, 87, 244, 777, 888, 926
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	584, 942
CseI	GACGC	2 cut(s)	74, 798
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	6 cut(s)	103, 196, 326, 509, 599, 925
DdeI	CTNAG	5 cut(s)	96, 120, 621, 812, 1009
DpnI	GATC	5 cut(s)	15, 393, 423, 516, 953
DpnII	GATC	5 cut(s)	13, 391, 421, 514, 951
DraI	TTTAAA	3 cut(s)	142, 283, 894
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
EciI	GGCGGA	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	584, 942
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	340
FaeI	CATG	6 cut(s)	106, 199, 329, 512, 602, 928
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	2 cut(s)	801, 971
FatI	CATG	6 cut(s)	102, 195, 325, 508, 598, 924
FauI	CCCGC	3 cut(s)	360, 654, 996
FbaI	TGATCA	2 cut(s)	13, 421
Fnu4HI	GCNGC	6 cut(s)	32, 35, 83, 131, 212, 215
FokI	GGATG	6 cut(s)	333, 428, 454, 545, 603, 665
Fsp4HI	GCNGC	6 cut(s)	32, 35, 83, 131, 212, 215
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	6 cut(s)	32, 35, 83, 131, 212, 215
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	4 cut(s)	227, 288, 518, 783
HgaI	GACGC	2 cut(s)	74, 798
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	6 cut(s)	106, 199, 329, 512, 602, 928
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	232, 856
HindII	GTYRAC	2 cut(s)	232, 856
HinfI	GANTC	1 cut(s)	536
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	4 cut(s)	227, 288, 518, 783
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	5 cut(s)	232, 640, 788, 856, 997
Hpy188I	TCNGA	5 cut(s)	13, 97, 160, 180, 426
Hpy188III	TCNNGA	2 cut(s)	509, 620
Hpy8I	GTNNAC	5 cut(s)	232, 640, 788, 856, 997
HpyAV	CCTTC	3 cut(s)	742, 830, 913
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	8 cut(s)	89, 211, 323, 453, 775, 866, 872, 997
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 223, 361, 735
HpyF3I	CTNAG	5 cut(s)	96, 120, 621, 812, 1009
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	6 cut(s)	106, 199, 329, 512, 602, 928
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	2 cut(s)	13, 421
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	13, 391, 421, 514, 951
LmnI	GCTCC	2 cut(s)	239, 784
Lsp1109I	GCAGC	3 cut(s)	142, 223, 226
LweI	GCATC	2 cut(s)	171, 643
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	4 cut(s)	62, 314, 497, 746
MalI	GATC	5 cut(s)	15, 393, 423, 516, 953
MboI	GATC	5 cut(s)	13, 391, 421, 514, 951
MfeI	CAATTG	1 cut(s)	358
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	999
MluCI	AATT	9 cut(s)	4, 23, 73, 154, 277, 310, 358, 409, 806
MmeI	TCCRAC	1 cut(s)	854
MnlI	CCTC	7 cut(s)	201, 466, 606, 616, 793, 889, 898
MseI	TTAA	5 cut(s)	72, 141, 231, 282, 893
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	991
MspI	CCGG	4 cut(s)	227, 288, 518, 783
MspR9I	CCNGG	1 cut(s)	783
MunI	CAATTG	1 cut(s)	358
Mva1269I	GAATGC	2 cut(s)	115, 226
MwoI	GCNNNNNNNGC	4 cut(s)	40, 223, 361, 735
NciI	CCSGG	1 cut(s)	783
NdeII	GATC	5 cut(s)	13, 391, 421, 514, 951
NlaIII	CATG	6 cut(s)	106, 199, 329, 512, 602, 928
NlaIV	GGNNCC	1 cut(s)	943
NmuCI	GTSAC	2 cut(s)	62, 746
NspI	RCATGY	1 cut(s)	928
PaeI	GCATGC	1 cut(s)	928
PagI	TCATGA	1 cut(s)	508
PctI	GAATGC	2 cut(s)	115, 226
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	6 cut(s)	33, 36, 84, 132, 213, 216
PshAI	GACNNNNGTC	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	943
PspPI	GGNCC	2 cut(s)	584, 942
PsuI	RGATCY	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	5 cut(s)	72, 141, 231, 282, 893
SatI	GCNGC	6 cut(s)	32, 35, 83, 131, 212, 215
Sau3AI	GATC	5 cut(s)	13, 391, 421, 514, 951
Sau96I	GGNCC	2 cut(s)	584, 942
ScrFI	CCNGG	1 cut(s)	783
SduI	GDGCHC	1 cut(s)	999
SetI	ASST	7 cut(s)	139, 450, 497, 548, 645, 781, 1022
SfaNI	GCATC	2 cut(s)	171, 643
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	584, 942
SmiMI	CAYNNNNRTG	1 cut(s)	603
SphI	GCATGC	1 cut(s)	928
Sse9I	AATT	9 cut(s)	4, 23, 73, 154, 277, 310, 358, 409, 806
SsiI	CCGC	9 cut(s)	32, 35, 54, 83, 343, 353, 661, 968, 989
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	781
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	1 cut(s)	394
TasI	AATT	9 cut(s)	4, 23, 73, 154, 277, 310, 358, 409, 806
TauI	GCSGC	3 cut(s)	34, 37, 85
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	5 cut(s)	72, 141, 231, 282, 893
Tru9I	TTAA	5 cut(s)	72, 141, 231, 282, 893
TscAI	CASTG	4 cut(s)	67, 597, 684, 888
TseFI	GTSAC	2 cut(s)	62, 746
TseI	GCWGC	3 cut(s)	130, 211, 214
Tsp45I	GTSAC	2 cut(s)	62, 746
TspDTI	ATGAA	5 cut(s)	17, 212, 458, 497, 525
TspRI	CASTG	4 cut(s)	67, 597, 684, 888
Van91I	CCANNNNNTGG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	995
VpaK11BI	GGWCC	2 cut(s)	584, 942
XapI	RAATTY	4 cut(s)	4, 154, 277, 806
XceI	RCATGY	1 cut(s)	928
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.