AT3G19910

zinc-RING finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010233
Physical Location & Seq
Forward (+)
6926189 .. 6929567
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19910.1

Sequence Viewer

Length: 1023 bp
ATGCCCATGGAGAACGACAATGGCCCACACGTTGGCAACGTCGTCGTCACCGCTGAGCAAGCGACCAAGATTAACGAGACTGATGGACGGTTGCCGGAGAATCGGCAGACCGGTGTTGTCTCTGACACCGGAAGTGGTAGCGAGAGAGGAGAGCAAGGGGTTGGAGAGTCGGCAGTTGCTGTGGCGGTGCCGGTGGAGGAGAGCGGATCGATTTCGGTGGGAGAGCTACCTGCTCCCCGATCTTCCTCTGCTAGAGTTCCGTTTACTAATCTAAGCCAAATTGATGCGGATCTTGCTCTTGCTCGCACACTCCAAGAACAGGAGCGGGCGTATATGATGTTGACCATGAATAGTGAAATCAGTGACTATGGGAGCTGGGAAACTGGAAGCTATGTATACGATGAGGATGAGTTTGATGACCCCGAGAATGAGGATGAGGATGATGATGAAGATGAATATGAAACAGATGATGATCCTCAGGAAGATGGGCTTGATGTCAATGTGCACGCCAATGAAGATGATCAAGAAGATGACGGTAACTCTGACATTGAAGAAGTTGCTTATACAGATGATGAGGCCTATGCTAGAGCTCTTCAAGAAGCTGAAGAAAGGGATATGGCTGCTAGATTGTCTGCCTTATCTGGGTTAGCAAACCGGGTGGTTGAAGATCTAGAGGATGAGAGTCATACTTCTCAGGATGCCTGGGATGAGATGGATCCTGATGAGCTTTCATATGAGGAGTTGCTTGCACTTGGCGACATTGTGGGAACCGAAAGTAGAGGATTGTCTGCTGATACAATTGCATCTTTGCCTTCAAAAAGATATAAAGAAGGAGACAATCAGAACGGAACCAATGAGTCATGTGTTATATGTCGTTTAGACTATGAGGATGACGAAGACCTGATACTGCTCCCATGCAAACATTCTTACCACTCGGAGTGCATAAACAACTGGTTGAAGATAAACAAGGTTTGCCCCGTATGCAGTGCAGAAGTTTCAACTTCGACCTCTGGACAAAGCTGA

Protein Analysis

340

Amino Acids

37.26

Weight (kDa)

4.05

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 282 - 328 1.1e-09 RING-H2 zinc finger domain
zf-C3HC4_3 PF13920 285 - 333 3e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 287 - 328 6.7e-14 Ring finger domain
zf-C3HC4 PF00097 288 - 328 5.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 288 - 329 1.5e-07 zinc-RING finger domain
zf-RING_11 PF17123 288 - 315 1e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 288 - 328 1.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 2 cut(s) 204, 325
AccI GTMKAC 1 cut(s) 396
AciI CCGC 5 cut(s) 51, 185, 204, 287, 325
AclWI GGATC 5 cut(s) 214, 297, 467, 710, 723
AcuI CTGAAG 1 cut(s) 624
AfiI CCNNNNNNNGG 3 cut(s) 32, 319, 642
AflIII ACRYGT 1 cut(s) 28
AgeI ACCGGT 1 cut(s) 110
AgsI TTSAA 6 cut(s) 551, 596, 665, 816, 958, 999
AjnI CCWGG 1 cut(s) 701
AluBI AGCT 7 cut(s) 226, 375, 390, 590, 602, 727, 1020
AluI AGCT 7 cut(s) 226, 375, 390, 590, 602, 727, 1020
Alw21I GWGCWC 2 cut(s) 507, 592
Alw26I GTCTC 3 cut(s) 71, 124, 828
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 5 cut(s) 214, 297, 467, 710, 723
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 2 cut(s) 22, 576
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 620
AsiGI ACCGGT 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 507
BamHI GGATCC 1 cut(s) 715
BanI GGYRCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 592
BarI GAAGNNNNNNTAC 2 cut(s) 888, 920
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 507, 592
BbvI GCAGC 1 cut(s) 607
BccI CCATC 3 cut(s) 77, 479, 706
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 703
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 3 cut(s) 71, 124, 828
BfaI CTAG 4 cut(s) 252, 585, 624, 671
BfuAI ACCTGC 1 cut(s) 238
BglII AGATCT 1 cut(s) 667
BisI GCNGC 1 cut(s) 621
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 622
Bme1390I CCNGG 2 cut(s) 656, 703
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 4 cut(s) 189, 717, 769, 850
BmrFI CCNGG 2 cut(s) 656, 703
BmsI GCATC 3 cut(s) 274, 688, 812
BpiI GAAGAC 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 656
Bsa29I ATCGAT 1 cut(s) 209
BsaBI GATNNNNATC 2 cut(s) 288, 471
BsaJI CCNNGG 2 cut(s) 6, 702
BsaWI WCCGGW 2 cut(s) 110, 128
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 319, 642
Bse118I RCCGGY 2 cut(s) 110, 190
Bse1I ACTGG 2 cut(s) 388, 956
Bse21I CCTNAGG 1 cut(s) 477
Bse8I GATNNNNATC 2 cut(s) 288, 471
BseBI CCWGG 1 cut(s) 703
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 6, 702
BseGI GGATG 7 cut(s) 412, 439, 445, 682, 703, 712, 895
BseJI GATNNNNATC 2 cut(s) 288, 471
BseLI CCNNNNNNNGG 3 cut(s) 32, 319, 642
BseMII CTCAG 3 cut(s) 45, 491, 707
BseNI ACTGG 2 cut(s) 388, 956
BseRI GAGGAG 3 cut(s) 162, 212, 752
BseSI GKGCMC 1 cut(s) 507
BseXI GCAGC 1 cut(s) 607
BseYI CCCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 1008
BshFI GGCC 2 cut(s) 24, 578
BshNI GGYRCC 1 cut(s) 187
BshTI ACCGGT 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 507, 592
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 5 cut(s) 95, 111, 129, 191, 655
BslI CCNNNNNNNGG 3 cut(s) 32, 319, 642
BsmAI GTCTC 3 cut(s) 71, 124, 828
BsnI GGCC 2 cut(s) 24, 578
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 507, 592
Bsp143I GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
Bsp1720I GCTNAGC 1 cut(s) 54
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 5 cut(s) 51, 185, 204, 287, 325
BspANI GGCC 2 cut(s) 24, 578
BspCNI CTCAG 3 cut(s) 46, 490, 706
BspDI ATCGAT 1 cut(s) 209
BspLI GGNNCC 4 cut(s) 189, 717, 769, 850
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 5 cut(s) 214, 297, 467, 710, 723
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 187
BsrBI CCGCTC 2 cut(s) 204, 325
BsrFI RCCGGY 2 cut(s) 110, 190
BsrI ACTGG 2 cut(s) 388, 956
BssAI RCCGGY 2 cut(s) 110, 190
BssECI CCNNGG 2 cut(s) 6, 702
BssMI GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
BssNAI GTATAC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 2 cut(s) 90, 536
Bst6I CTCTTC 1 cut(s) 597
BstC8I GCNNGC 5 cut(s) 60, 304, 327, 507, 747
BstDEI CTNAG 4 cut(s) 54, 272, 477, 693
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 7 cut(s) 412, 439, 445, 682, 703, 712, 895
BstKTI GATC 7 cut(s) 209, 242, 292, 475, 523, 670, 718
BstMAI GTCTC 3 cut(s) 71, 124, 828
BstMBI GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
BstMWI GCNNNNNNNGC 3 cut(s) 59, 293, 981
BstNI CCWGG 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 654, 701
BstSLI GKGCMC 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 607
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 3 cut(s) 289, 667, 715
BstYI RGATCY 3 cut(s) 289, 667, 715
BstZ17I GTATAC 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 24, 578
BsuTUI ATCGAT 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 7 cut(s) 412, 439, 445, 682, 703, 712, 895
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 2 cut(s) 367, 991
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 5 cut(s) 60, 304, 327, 507, 747
CaiI CAGNNNCTG 1 cut(s) 179
Cfr10I RCCGGY 2 cut(s) 110, 190
Cfr13I GGNCC 1 cut(s) 23
ClaI ATCGAT 1 cut(s) 209
CspAI ACCGGT 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 639, 674
CviAII CATG 4 cut(s) 7, 346, 861, 915
DdeI CTNAG 4 cut(s) 54, 272, 477, 693
DpnI GATC 7 cut(s) 208, 241, 291, 474, 522, 669, 717
DpnII GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 590
Eco130I CCWWGG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 592
Eco53kI GAGCTC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 624
Eco81I CCTNAGG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 10, 349, 864, 918
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FatI CATG 4 cut(s) 6, 345, 860, 914
FauI CCCGC 1 cut(s) 318
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 7 cut(s) 419, 446, 452, 689, 710, 719, 902
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 4 cut(s) 252, 585, 624, 671
GluI GCNGC 1 cut(s) 621
GsaI CCCAGC 1 cut(s) 379
HaeIII GGCC 2 cut(s) 24, 578
HapII CCGG 5 cut(s) 95, 111, 129, 191, 655
Hin1II CATG 4 cut(s) 10, 349, 864, 918
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 4 cut(s) 100, 167, 682, 857
HpaII CCGG 5 cut(s) 95, 111, 129, 191, 655
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 4 cut(s) 264, 342, 397, 505
Hpy188I TCNGA 4 cut(s) 124, 544, 843, 937
Hpy188III TCNNGA 7 cut(s) 479, 524, 596, 671, 695, 719, 1011
Hpy8I GTNNAC 4 cut(s) 264, 342, 397, 505
Hpy99I CGWCG 2 cut(s) 44, 47
HpyAV CCTTC 2 cut(s) 822, 824
HpyCH4III ACNGT 2 cut(s) 90, 536
HpyCH4IV ACGT 2 cut(s) 30, 39
HpyCH4V TGCA 7 cut(s) 505, 749, 803, 918, 942, 984, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 293, 981
HpyF3I CTNAG 4 cut(s) 54, 272, 477, 693
HpySE526I ACGT 2 cut(s) 30, 39
Hsp92II CATG 4 cut(s) 10, 349, 864, 918
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 4 cut(s) 238, 322, 372, 915
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 3 cut(s) 274, 688, 812
MaeI CTAG 4 cut(s) 252, 585, 624, 671
MaeII ACGT 2 cut(s) 30, 39
MaeIII GTNAC 3 cut(s) 46, 362, 536
MalI GATC 7 cut(s) 208, 241, 291, 474, 522, 669, 717
MbiI CCGCTC 2 cut(s) 204, 325
MboI GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 3 cut(s) 289, 667, 715
MhlI GDGCHC 2 cut(s) 507, 592
MluCI AATT 2 cut(s) 279, 798
MlyI GAGTC 3 cut(s) 176, 691, 866
MmeI TCCRAC 1 cut(s) 142
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 5 cut(s) 95, 111, 129, 191, 655
MspR9I CCNGG 2 cut(s) 656, 703
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 1 cut(s) 703
MwoI GCNNNNNNNGC 3 cut(s) 59, 293, 981
NciI CCSGG 1 cut(s) 656
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 733
NdeII GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
NlaIII CATG 4 cut(s) 10, 349, 864, 918
NlaIV GGNNCC 4 cut(s) 189, 717, 769, 850
NmuCI GTSAC 2 cut(s) 46, 362
PceI AGGCCT 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 32
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 3 cut(s) 175, 690, 865
PpsI GAGTC 3 cut(s) 175, 690, 865
Psp124BI GAGCTC 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 1 cut(s) 701
PspN4I GGNNCC 4 cut(s) 189, 717, 769, 850
PspPI GGNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 3 cut(s) 289, 667, 715
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 592
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 7 cut(s) 206, 239, 289, 472, 520, 667, 715
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 3 cut(s) 176, 691, 866
ScrFI CCNGG 2 cut(s) 656, 703
SduI GDGCHC 2 cut(s) 507, 592
SfaNI GCATC 3 cut(s) 274, 688, 812
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 2 cut(s) 279, 798
SseBI AGGCCT 1 cut(s) 578
SsiI CCGC 5 cut(s) 51, 185, 204, 287, 325
SspMI CTAG 4 cut(s) 252, 585, 624, 671
SstI GAGCTC 1 cut(s) 592
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 654, 701
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 90, 536
TaiI ACGT 2 cut(s) 33, 42
TaqI TCGA 2 cut(s) 209, 1004
TasI AATT 2 cut(s) 279, 798
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 367, 991
TseFI GTSAC 2 cut(s) 46, 362
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 2 cut(s) 46, 362
TspDTI ATGAA 6 cut(s) 362, 462, 468, 474, 528, 720
TspGWI ACGGA 2 cut(s) 249, 861
TspRI CASTG 2 cut(s) 367, 991
Van91I CCANNNNNTGG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 670
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 4 cut(s) 252, 585, 624, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.