Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010233

Physical Location & Seq

Genomic Coordinates Forward (+)

22262278 .. 22269966

Gene Structure 7689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G271700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAAAATCATAACGCCAAATTGGGCTCTGGCGGTGGACTCAAACCCAACAACAATAACAGCATCAGCGAACAAGAACAAAACCCCAATTTGAATCAATGCGAAGAACAAGAACAAGAAGTAACTACTGAGTCCTCGCAATTGGTGGACCCTCCCTCACCTCCTGTTCCGCAGTCTTCAAGAACTCCCTTTACTAATCTCAGTCAGGTCGATGCTGACCTAGCCCTTGCTCGAACCCTCCAAGAACAGGAAAGGGCATACATGATGCTACGAATGAACAATGAAGATAGTGATTATGGAAGTTGGGAAGCTGGAAGTTATGTGCATGAGGATGAGGATGATTTTAATGATTTTCATGACGATACTGATGATAACGATGATGAGGAGCAATATGATGGAACTGAGGTTGACAATGATGAAGATGCGTTTGATGTGCATGGTCATGATGATGCTGGAGAGGATGATAACCCCAGAGTCGAATATGACCCGGCTGTTTTTTCAAGTGATGAGGCCTATGCAAGAGCCCTGCAGGATGCTGAAGATAGAGAGATGGCCGCTAGACTGATGGCTCTTGCTGGGATTAATGACCGCGAAGTTGAGCACACAGAGGAACATGGAGGTAACTCTCAGGATACATGGGAGGAGGTTGACCCAGATGAACTTTCATATGAGGAGTTAATTGCATTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGGCTTTCGGCTGATACCATCGCCTCATTGCCTTCAGTAAGCTACAAGACAGGAAGTGGTCAGAATGGAAGCAATGAGTCGTGTGTCATTTGTCGGCTGGATTACGAGGCTGGTGAGAACTTGACAATACTATCTTGCAAACATTCCTATCATTCTGAGTGCATAAATAATTGGTTGACAATAAACAAGGTCTGCCCTGTTTGCAGTGCTGAAGTCTCCACCTCTGGAAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

317

Amino Acids

34.89

Weight (kDa)

4.05

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19910 AT3G19910
fragaria_vesca	FvH4_1g00010
malus_domestica	MD00G1145000.v1.1 MD15G1141500.v1.1
prunus_persica	Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1
pyrus_communis	pycom15g12780 pycom290g00050
rosa_chinensis	RchiOBHm_Chr2g0084221
rosa_laevigata	RLG00000015601
rosa_multiflora	Rmu_sc0003129.1_g000024
rosa_roxburghii	Rroxscaffold_2G00156230
rosa_rugosa	Rorug01G0451900 Rorug01G0451900
rosa_samantha	Rh2AG000200 Rh2BG000100 Rh2CG000100 Rh2DG000200
rosa_wichuraiana	Rw2G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	591
AciI	CCGC	4 cut(s)	33, 170, 555, 589
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	3 cut(s)	558, 732, 945
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	94, 180, 501
AluBI	AGCT	3 cut(s)	311, 756, 948
AluI	AGCT	3 cut(s)	311, 756, 948
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	934
AoxI	GGCC	2 cut(s)	510, 552
AseI	ATTAAT	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	150, 701, 839
AvaII	GGWCC	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	29, 526
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	603
BccI	CCATC	4 cut(s)	389, 544, 559, 740
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	1 cut(s)	934
BfaI	CTAG	3 cut(s)	221, 558, 949
BfmI	CTRYAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	6 cut(s)	72, 202, 255, 412, 439, 523
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	740, 793
BseGI	GGATG	4 cut(s)	337, 343, 466, 538
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	740, 793
BseMII	CTCAG	6 cut(s)	120, 214, 393, 641, 696, 861
BseRI	GAGGAG	3 cut(s)	398, 656, 686
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	512, 554
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	934
BsnI	GGCC	2 cut(s)	512, 554
Bsp1286I	GDGCHC	3 cut(s)	29, 526, 603
BspACI	CCGC	4 cut(s)	33, 170, 555, 589
BspANI	GGCC	2 cut(s)	512, 554
BspCNI	CTCAG	6 cut(s)	121, 213, 394, 640, 697, 862
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	2 cut(s)	355, 442
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	740, 793
BstDEI	CTNAG	6 cut(s)	129, 200, 402, 627, 705, 870
BstF5I	GGATG	4 cut(s)	337, 343, 466, 538
BstFNI	CGCG	1 cut(s)	591
BstMAI	GTCTC	1 cut(s)	934
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 915
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	512, 554
BtgZI	GCGATG	1 cut(s)	718
BtsCI	GGATG	4 cut(s)	337, 343, 466, 538
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	1 cut(s)	925
CciI	TCATGA	2 cut(s)	355, 442
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	7 cut(s)	262, 326, 356, 437, 443, 614, 636
DdeI	CTNAG	6 cut(s)	129, 200, 402, 627, 705, 870
EaeI	YGGCCR	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	2 cut(s)	29, 526
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	558, 732, 945
EcoT38I	GRGCYC	2 cut(s)	29, 526
FaeI	CATG	7 cut(s)	265, 329, 359, 440, 446, 617, 639
FatI	CATG	7 cut(s)	261, 325, 355, 436, 442, 613, 635
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	4 cut(s)	344, 350, 473, 545
FriOI	GRGCYC	2 cut(s)	29, 526
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	3 cut(s)	221, 558, 949
GluI	GCNGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	579
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	512, 554
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	7 cut(s)	265, 329, 359, 440, 446, 617, 639
HincII	GTYRAC	3 cut(s)	409, 649, 891
HindII	GTYRAC	3 cut(s)	409, 649, 891
HinfI	GANTC	5 cut(s)	39, 94, 131, 474, 791
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	3 cut(s)	150, 701, 839
Hpy166II	GTNNAC	5 cut(s)	38, 148, 409, 649, 891
Hpy188I	TCNGA	2 cut(s)	777, 871
Hpy188III	TCNNGA	5 cut(s)	180, 356, 443, 629, 939
Hpy8I	GTNNAC	5 cut(s)	38, 148, 409, 649, 891
HpyAV	CCTTC	1 cut(s)	756
HpyCH4V	TGCA	8 cut(s)	325, 436, 518, 529, 683, 852, 876, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 915
HpyF3I	CTNAG	6 cut(s)	129, 200, 402, 627, 705, 870
Hsp92II	CATG	7 cut(s)	265, 329, 359, 440, 446, 617, 639
LmnI	GCTCC	1 cut(s)	385
LweI	GCATC	6 cut(s)	72, 202, 255, 412, 439, 523
MaeI	CTAG	3 cut(s)	221, 558, 949
MaeIII	GTNAC	2 cut(s)	121, 620
MboII	GAAGA	5 cut(s)	116, 168, 296, 431, 551
MfeI	CAATTG	1 cut(s)	140
MhlI	GDGCHC	3 cut(s)	29, 526, 603
MluCI	AATT	5 cut(s)	20, 88, 140, 678, 883
MlyI	GAGTC	4 cut(s)	33, 140, 483, 800
MmeI	TCCRAC	1 cut(s)	679
MseI	TTAA	3 cut(s)	345, 582, 677
MslI	CAYNNNNRTG	3 cut(s)	330, 441, 447
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	221, 915
NciI	CCSGG	1 cut(s)	488
NdeI	CATATG	1 cut(s)	667
NlaIII	CATG	7 cut(s)	265, 329, 359, 440, 446, 617, 639
NlaIV	GGNNCC	1 cut(s)	150
PagI	TCATGA	2 cut(s)	355, 442
PceI	AGGCCT	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	4 cut(s)	33, 139, 482, 799
PpsI	GAGTC	4 cut(s)	33, 139, 482, 799
PshBI	ATTAAT	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	148
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PstI	CTGCAG	1 cut(s)	531
RseI	CAYNNNNRTG	3 cut(s)	330, 441, 447
SaqAI	TTAA	3 cut(s)	345, 582, 677
SatI	GCNGC	1 cut(s)	555
Sau96I	GGNCC	1 cut(s)	148
SbfI	CCTGCAGG	1 cut(s)	531
SchI	GAGTC	4 cut(s)	33, 140, 483, 800
ScrFI	CCNGG	1 cut(s)	488
SdaI	CCTGCAGG	1 cut(s)	531
SduI	GDGCHC	3 cut(s)	29, 526, 603
SfaNI	GCATC	6 cut(s)	72, 202, 255, 412, 439, 523
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	3 cut(s)	330, 441, 447
Sse8387I	CCTGCAGG	1 cut(s)	531
Sse9I	AATT	5 cut(s)	20, 88, 140, 678, 883
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	4 cut(s)	33, 170, 555, 589
SspMI	CTAG	3 cut(s)	221, 558, 949
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	486
TaqI	TCGA	3 cut(s)	210, 232, 477
TasI	AATT	5 cut(s)	20, 88, 140, 678, 883
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	3 cut(s)	345, 582, 677
Tru9I	TTAA	3 cut(s)	345, 582, 677
TscAI	CASTG	1 cut(s)	925
TspDTI	ATGAA	6 cut(s)	290, 297, 344, 432, 654, 672
TspRI	CASTG	1 cut(s)	925
VpaK11BI	GGWCC	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	582
XspI	CTAG	3 cut(s)	221, 558, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.