Rorug01G0451900

E3 ubiquitin ligase BIG

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
54668957 .. 54670761
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0451900.1

Sequence Viewer

Length: 1284 bp
ATGGAAGATGATGATTGGGATCTTTACGCGGTGGTGCGCAGCTGTAAAGCTGTCACCACCGCCAGAGCCTCGCTTCCTGTTGTAACAGCACCCAATCCGGTTCACCACGACGACTCTTCTGTGCCGTCGTGGATGTGGGATTGGGTGAAGCACGAGGAGGTGGAGACTCATGTCCCGCCAGTCAGGTTTTCCAATCTCGAGTTCAGAGCTGGCGATGGATTGGAGGAGTTTTACCAACCCTTTTTCCCAAGCCCCACCATTGATAATACCACCACCACCACCACCATCACCACTGGTACTAGTAGTTATGCTCCTGCTGGTACTATTATTCCAAATTCCGCTACCTCCTTTATCTCTGACTTTGGAGGAGGATCTACTAGTAGTGGCCAGCATCAACTACAACAACAGCAGAATAATTTCATGCCTGCCAATACCAACACCAGCCCTCATTTCAACCCCGGATTCGCACCCGTTTCGGGTTTGGGAAGATTCCCCGAACAACAACTCCTAAAACCTCTCAAGCTAGAAACTCCTGAGAATCCGGAAGAGTTAATTCCGAGGCTCAAGCCGGTCTCTTTGGTCGGTCCTGTCATACCGCCCATGCAAATTCCACCGAACCTGATCCGACCAAGGAAGAGGAAGAGCCCAGTCAAGAAGATGGTGTGTCATTTGGCAGCGGACAATCTCTCCTCATCGGATTTGTGGGCGTGGCGGAAATATGGTCAGAAACCTATAAAAGGCTCTCCACATCCAAGGAACTACTACCGCTGCAGCAGCTCAAAGGGTTGCTCTGCCAGAAAGCAAGTGGAGCGAAGCACCGAGGACCCTAACATGTTTGTTGTCACATACTGCGGAGACCACACGCATCCTCGCCCGACTCACCGGAACTCTCTCGCCGGAAGCACCAGGAACAAGGCGGCAGCGACGACTTCAAAAGCGAAAGATCCCGAGTCTCCCTCCGTTCAATTAGTGCCAGCTCAAGGTGGTGATGATGATGAACAAGCTGCCAATAGCAACTCCTGTGATGGAGACAAAGCTAGCGAGGAAGCCGAGGATGAGGAAATGGAAGAAGACGAGGATGATGAGGAGTTTGTGGTGTCCTCGGAGGACATATTCTTGGGGATGAAGCAATTGGGTAGAACTGGTTCAGGAGGCAGCACTCTAGGGTCTTTGGCTGCTGGAACTTCTGGTGATGGTTTTTCGACTAAACAGTCGAATTTGGGGTCTTCTTGGGGGGCAAGTTGCTCCTCCTCTGCCGGAGCCACCGTCAGCGGTGGCTGTTAG

Protein Analysis

427

Amino Acids

46.03

Weight (kDa)

5.22

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 233 - 290 1.7e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1210
Acc16I TGCGCA 1 cut(s) 38
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 541
AclWI GGATC 4 cut(s) 27, 379, 616, 938
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 334, 606, 1216
AfaI GTAC 2 cut(s) 298, 322
AfiI CCNNNNNNNGG 3 cut(s) 476, 737, 980
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 3 cut(s) 454, 933, 965
AhlI ACTAGT 2 cut(s) 299, 377
AjnI CCWGG 1 cut(s) 905
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 8 cut(s) 42, 50, 209, 523, 777, 977, 1004, 1037
AluI AGCT 8 cut(s) 42, 50, 209, 523, 777, 977, 1004, 1037
Alw26I GTCTC 5 cut(s) 158, 577, 849, 957, 1023
AlwI GGATC 4 cut(s) 27, 379, 616, 938
Ama87I CYCGRG 2 cut(s) 197, 947
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 9 cut(s) 39, 674, 768, 771, 774, 920, 1004, 1155, 1175
ApoI RAATTY 3 cut(s) 334, 606, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
Asp700I GAANNNNTTC 2 cut(s) 416, 1144
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 584, 823
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 7 cut(s) 46, 95, 157, 280, 872, 998, 1202
AsuNHI GCTAGC 1 cut(s) 1037
AvaI CYCGRG 2 cut(s) 197, 947
AvaII GGWCC 2 cut(s) 584, 823
BalI TGGCCA 1 cut(s) 387
BanII GRGCYC 1 cut(s) 647
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 1077, 1218
BbvI GCAGC 9 cut(s) 51, 686, 755, 783, 786, 932, 991, 1162, 1167
BccI CCATC 5 cut(s) 209, 293, 652, 1019, 1187
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BciT130I CCWGG 1 cut(s) 907
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 5 cut(s) 158, 577, 849, 957, 1023
BcuI ACTAGT 2 cut(s) 299, 377
BfaI CTAG 5 cut(s) 300, 378, 524, 1038, 1163
BfmI CTRYAG 1 cut(s) 769
Bme1390I CCNGG 2 cut(s) 459, 907
Bme18I GGWCC 2 cut(s) 584, 823
BmeT110I CYCGRG 2 cut(s) 197, 947
BmgT120I GGNCC 2 cut(s) 584, 823
BmiI GGNNCC 2 cut(s) 825, 1261
BmrFI CCNGG 2 cut(s) 459, 907
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 2 cut(s) 400, 874
BmtI GCTAGC 1 cut(s) 1041
BmuI ACTGGG 1 cut(s) 641
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 1077, 1218
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpuEI CTTGAG 3 cut(s) 503, 548, 963
BpuMI CCSGG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 577, 849
BsaJI CCNNGG 7 cut(s) 457, 557, 629, 752, 819, 1050, 1101
BsaWI WCCGGW 3 cut(s) 97, 541, 882
BsaXI ACNNNNNCTCC 6 cut(s) 489, 519, 671, 701, 1251, 1281
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 737, 980
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 4 cut(s) 179, 298, 647, 1147
Bse8I GATNNNNATC 1 cut(s) 18
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 1 cut(s) 907
BseDI CCNNGG 7 cut(s) 457, 557, 629, 752, 819, 1050, 1101
BseGI GGATG 6 cut(s) 138, 748, 865, 1060, 1084, 1128
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 476, 737, 980
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 4 cut(s) 179, 298, 647, 1147
BseRI GAGGAG 7 cut(s) 170, 239, 381, 679, 1100, 1237, 1240
BseXI GCAGC 9 cut(s) 51, 686, 755, 783, 786, 932, 991, 1162, 1167
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 197, 947
BsiSI CCGG 7 cut(s) 98, 459, 542, 569, 883, 897, 1257
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 3 cut(s) 476, 737, 980
BsmAI GTCTC 5 cut(s) 158, 577, 849, 957, 1023
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 2 cut(s) 577, 849
BsoBI CYCGRG 2 cut(s) 197, 947
Bsp1286I GDGCHC 1 cut(s) 647
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 4 cut(s) 19, 371, 621, 943
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 526
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 825, 1261
BspMAI CTGCAG 1 cut(s) 773
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 4 cut(s) 27, 379, 616, 938
BspQI GCTCTTC 1 cut(s) 635
BspTNI GGTCTC 2 cut(s) 577, 849
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 4 cut(s) 179, 298, 647, 1147
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 7 cut(s) 457, 557, 629, 752, 819, 1050, 1101
BssMI GATC 4 cut(s) 19, 371, 621, 943
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 2 cut(s) 629, 752
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 907
Bst4CI ACNGT 2 cut(s) 1212, 1267
Bst6I CTCTTC 4 cut(s) 121, 540, 629, 635
BstC8I GCNNGC 5 cut(s) 211, 389, 426, 975, 1039
BstDEI CTNAG 1 cut(s) 534
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 6 cut(s) 138, 748, 865, 1060, 1084, 1128
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 4 cut(s) 22, 374, 624, 946
BstMAI GTCTC 5 cut(s) 158, 577, 849, 957, 1023
BstMBI GATC 4 cut(s) 19, 371, 621, 943
BstMWI GCNNNNNNNGC 2 cut(s) 774, 808
BstNI CCWGG 1 cut(s) 907
BstNSI RCATGY 1 cut(s) 835
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 457, 905
BstSFI CTRYAG 1 cut(s) 769
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 9 cut(s) 51, 686, 755, 783, 786, 932, 991, 1162, 1167
BstV2I GAAGAC 2 cut(s) 1077, 1218
BstX2I RGATCY 3 cut(s) 19, 371, 943
BstYI RGATCY 3 cut(s) 19, 371, 943
BsuRI GGCC 1 cut(s) 387
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 6 cut(s) 138, 748, 865, 1060, 1084, 1128
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 5 cut(s) 211, 389, 426, 975, 1039
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 584, 823
Csp6I GTAC 2 cut(s) 297, 321
CviAII CATG 4 cut(s) 170, 421, 601, 832
CviQI GTAC 2 cut(s) 297, 321
DdeI CTNAG 1 cut(s) 534
DpnI GATC 4 cut(s) 21, 373, 623, 945
DpnII GATC 4 cut(s) 19, 371, 621, 943
DrdI GACNNNNNNGTC 1 cut(s) 1210
DseDI GACNNNNNNGTC 1 cut(s) 1210
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 4 cut(s) 121, 540, 629, 635
EarI CTCTTC 4 cut(s) 121, 540, 629, 635
EciI GGCGGA 1 cut(s) 727
Eco130I CCWWGG 2 cut(s) 629, 752
Eco24I GRGCYC 1 cut(s) 647
Eco31I GGTCTC 2 cut(s) 577, 849
Eco47I GGWCC 2 cut(s) 584, 823
Eco88I CYCGRG 2 cut(s) 197, 947
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoO109I RGGNCCY 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 905
EcoT14I CCWWGG 2 cut(s) 629, 752
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 2 cut(s) 629, 752
FaeI CATG 4 cut(s) 173, 424, 604, 835
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 169, 420, 600, 831
FauI CCCGC 1 cut(s) 183
FokI GGATG 6 cut(s) 145, 735, 852, 1067, 1091, 1135
FriOI GRGCYC 1 cut(s) 647
FspBI CTAG 5 cut(s) 300, 378, 524, 1038, 1163
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 387
HapII CCGG 7 cut(s) 98, 459, 542, 569, 883, 897, 1257
HhaI GCGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 173, 424, 604, 835
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 7 cut(s) 113, 166, 462, 489, 538, 877, 950
HpaII CCGG 7 cut(s) 98, 459, 542, 569, 883, 897, 1257
HphI GGTGA 7 cut(s) 46, 95, 157, 280, 872, 998, 1202
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 7 cut(s) 206, 358, 558, 626, 697, 726, 1105
Hpy188III TCNNGA 6 cut(s) 197, 533, 542, 652, 947, 1149
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 3 cut(s) 113, 130, 928
HpyCH4III ACNGT 2 cut(s) 1212, 1267
HpyCH4V TGCA 2 cut(s) 604, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 774, 808
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 4 cut(s) 173, 424, 604, 835
HspAI GCGC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 541
Kzo9I GATC 4 cut(s) 19, 371, 621, 943
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 4 cut(s) 316, 808, 1250, 1259
Lsp1109I GCAGC 9 cut(s) 51, 686, 755, 783, 786, 932, 991, 1162, 1167
LweI GCATC 2 cut(s) 400, 874
MaeI CTAG 5 cut(s) 300, 378, 524, 1038, 1163
MaeIII GTNAC 3 cut(s) 52, 82, 841
MalI GATC 4 cut(s) 21, 373, 623, 945
MboI GATC 4 cut(s) 19, 371, 621, 943
MfeI CAATTG 1 cut(s) 1130
MflI RGATCY 3 cut(s) 19, 371, 943
MhlI GDGCHC 1 cut(s) 647
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 7 cut(s) 334, 415, 552, 606, 965, 1130, 1216
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 4 cut(s) 107, 160, 871, 959
MmeI TCCRAC 1 cut(s) 649
Mox20I TGGCCA 1 cut(s) 387
MroI TCCGGA 1 cut(s) 541
MroXI GAANNNNTTC 2 cut(s) 416, 1144
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 4 cut(s) 42, 677, 768, 1272
MspI CCGG 7 cut(s) 98, 459, 542, 569, 883, 897, 1257
MspR9I CCNGG 2 cut(s) 459, 907
MunI CAATTG 1 cut(s) 1130
MvaI CCWGG 1 cut(s) 907
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 774, 808
NciI CCSGG 1 cut(s) 459
NdeII GATC 4 cut(s) 19, 371, 621, 943
NheI GCTAGC 1 cut(s) 1037
NlaIII CATG 4 cut(s) 173, 424, 604, 835
NlaIV GGNNCC 2 cut(s) 825, 1261
NmeAIII GCCGAG 1 cut(s) 1075
NmuCI GTSAC 2 cut(s) 52, 841
NsbI TGCGCA 1 cut(s) 38
NspI RCATGY 1 cut(s) 835
PaeR7I CTCGAG 1 cut(s) 197
PciI ACATGT 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 635
PdmI GAANNNNTTC 2 cut(s) 416, 1144
PfeI GAWTC 3 cut(s) 462, 489, 538
PleI GAGTC 4 cut(s) 107, 160, 871, 958
PpsI GAGTC 4 cut(s) 107, 160, 871, 958
PpuMI RGGWCCY 1 cut(s) 823
PscI ACATGT 1 cut(s) 831
PshAI GACNNNNGTC 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 905
PspGI CCWGG 1 cut(s) 905
PspN4I GGNNCC 2 cut(s) 825, 1261
PspPI GGNCC 2 cut(s) 584, 823
PspPPI RGGWCCY 1 cut(s) 823
PsrI GAACNNNNNNTAC 2 cut(s) 1129, 1161
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 3 cut(s) 19, 371, 943
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 2 cut(s) 298, 322
RsaNI GTAC 2 cut(s) 297, 321
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 1 cut(s) 551
Sau3AI GATC 4 cut(s) 19, 371, 621, 943
Sau96I GGNCC 2 cut(s) 584, 823
SchI GAGTC 4 cut(s) 107, 160, 871, 959
ScrFI CCNGG 2 cut(s) 459, 907
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 2 cut(s) 400, 874
SfcI CTRYAG 1 cut(s) 769
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 2 cut(s) 584, 823
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 4 cut(s) 197, 518, 563, 978
SmoI CTYRAG 4 cut(s) 197, 518, 563, 978
SpeI ACTAGT 2 cut(s) 299, 377
Sse9I AATT 7 cut(s) 334, 415, 552, 606, 965, 1130, 1216
SspMI CTAG 5 cut(s) 300, 378, 524, 1038, 1163
StyD4I CCNGG 2 cut(s) 457, 905
StyI CCWWGG 2 cut(s) 629, 752
TaaI ACNGT 2 cut(s) 1212, 1267
TaqI TCGA 3 cut(s) 198, 1202, 1214
TaqII GACCGA 1 cut(s) 572
TasI AATT 7 cut(s) 334, 415, 552, 606, 965, 1130, 1216
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 3 cut(s) 462, 489, 538
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 2 cut(s) 52, 841
TseI GCWGC 9 cut(s) 39, 674, 768, 771, 774, 920, 1004, 1155, 1175
Tsp45I GTSAC 2 cut(s) 52, 841
TspDTI ATGAA 3 cut(s) 409, 1011, 1139
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 584, 823
XagI CCTNNNNNAGG 1 cut(s) 735
XapI RAATTY 3 cut(s) 334, 606, 1216
XceI RCATGY 1 cut(s) 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 2 cut(s) 416, 1144
XspI CTAG 5 cut(s) 300, 378, 524, 1038, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.