Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010233

Physical Location & Seq

Genomic Coordinates Forward (+)

42745 .. 48628

Gene Structure 5884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG000100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAACCACAACGCGAAATTGGTCCCTAACGGTGGACTCAAACCTAACCCCAGCAACAACCTTAGCGAACAAGAACAAGAAGAGAACCCTACTCTTAATCGTTGCGGAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGTAACTACGCAATTGGCGGAGCCTCCTTCACCTAATGCCCCGCAGTCCTCAAGAACTCCCTTCACTAATCTCAGTCAGGTCGATGCTGACCTTGCTCTTGCTCGAACTCTCCAAGAACAGGAAAGGGCATACATGATGCTGCGGATGAACAATGAAGGGAGTGATTATGGCAGTTGGGAAGCTGGAAGTTATGTGCATGATGATGAGGATGATTTTCATGATGATACTGACGGAAATGATGATGAGGAGCAATATGATGGGACTGATGCTGACAATGATGAAGAAGATGCATTTGATGTGCACGCTCATGATGATGCTGGAGACGATCATAACCCCAGTGTCGTATATGACCCTGCTGTTTTTTCAAGTGATGAGGCATATGCAAGAGCCCTGCAGGATGCTGAAGATAGAGATATGGCAGCTAGACTGATGGCCCTTGCAATTGATGACCGTGAAGCTGAGGACACTGAGGATCAGGGAGGTAACTCTCAGGATGCATGGGAGGAGGTTGACCCAGATGAGCTTTCGTATGAGGAGTTACTTGCATTGGGTGAAGTTGTTGGAACAGAGAGCAGAGGGCTTTCTGCTGATACAATTGCTTCATTGCCTTCAGTAAGCTACAAGATGGGGAGCGATCAGAATGGAAGCAATGAGTCGTGTGTCATTTGTCGGTTAGATTATGAGGATGGTGAAAACTTGACAGTACTTTCTTGCAAACACTCTTATCATTCTGATTGCATAAATAATTGGTTGACAATAAACAAGGTCTGCCCAGTTTGCAGTGCTGAAGTCTCCACATCTGGAAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

317

Amino Acids

34.94

Weight (kDa)

4.05

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	262 - 307	1.1e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	266 - 307	5.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	267 - 307	3.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	267 - 294	4.3e-08	RING-like zinc finger
zf-C3HC4	PF00097	267 - 307	5.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	267 - 308	1.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19910 AT3G19910
fragaria_vesca	FvH4_1g00010
malus_domestica	MD00G1145000.v1.1 MD15G1141500.v1.1
prunus_persica	Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1
pyrus_communis	pycom15g12780 pycom290g00050
rosa_chinensis	RchiOBHm_Chr2g0084221
rosa_laevigata	RLG00000015601
rosa_multiflora	Rmu_sc0003129.1_g000024
rosa_roxburghii	Rroxscaffold_2G00156230
rosa_rugosa	Rorug01G0451900 Rorug01G0451900
rosa_samantha	Rh2AG000200 Rh2BG000100 Rh2CG000100 Rh2DG000200
rosa_wichuraiana	Rw2G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	108, 158, 182, 283
AclWI	GGATC	1 cut(s)	621
AcuI	CTGAAG	3 cut(s)	564, 735, 948
AfaI	GTAC	1 cut(s)	846
AfiI	CCNNNNNNNGG	2 cut(s)	35, 259
AgsI	TTSAA	1 cut(s)	507
AluBI	AGCT	6 cut(s)	323, 563, 599, 664, 759, 951
AluI	AGCT	6 cut(s)	323, 563, 599, 664, 759, 951
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	456, 937
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	1 cut(s)	573
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	280, 560
AspS9I	GGNCC	2 cut(s)	25, 574
AsuHPI	GGTGA	3 cut(s)	162, 704, 842
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	267, 572
BccI	CCATC	4 cut(s)	392, 565, 760, 821
BcoDI	GTCTC	2 cut(s)	456, 937
BfaI	CTAG	2 cut(s)	564, 952
BfmI	CTRYAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	281, 561
BlsI	GCNGC	2 cut(s)	282, 562
BmcAI	AGTACT	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 574
BmiI	GGNNCC	2 cut(s)	27, 162
BmrI	ACTGGG	2 cut(s)	471, 908
BmsI	GCATC	7 cut(s)	214, 267, 397, 418, 445, 529, 625
BmuI	ACTGGG	2 cut(s)	471, 908
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	2 cut(s)	65, 600
BpuEI	CTTGAG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 259
Bse1I	ACTGG	2 cut(s)	477, 914
Bse3DI	GCAATG	2 cut(s)	743, 796
BseGI	GGATG	5 cut(s)	291, 355, 544, 640, 832
BseLI	CCNNNNNNNGG	2 cut(s)	35, 259
BseMI	GCAATG	2 cut(s)	743, 796
BseMII	CTCAG	4 cut(s)	226, 591, 600, 644
BseNI	ACTGG	2 cut(s)	477, 914
BseRI	GAGGAG	3 cut(s)	401, 659, 689
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	267, 572
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	11, 415
BslI	CCNNNNNNNGG	2 cut(s)	35, 259
BsmAI	GTCTC	2 cut(s)	456, 937
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	2 cut(s)	11, 415
BsnI	GGCC	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	444, 532
Bsp143I	GATC	3 cut(s)	466, 613, 775
BspACI	CCGC	4 cut(s)	108, 158, 182, 283
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	4 cut(s)	225, 592, 601, 643
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	2 cut(s)	358, 448
BspLI	GGNNCC	2 cut(s)	27, 162
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	743, 796
BsrI	ACTGG	2 cut(s)	477, 914
BssMI	GATC	3 cut(s)	466, 613, 775
Bst4CI	ACNGT	3 cut(s)	35, 593, 844
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	5 cut(s)	65, 212, 600, 609, 630
BstF5I	GGATG	5 cut(s)	291, 355, 544, 640, 832
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	469, 616, 778
BstMAI	GTCTC	2 cut(s)	456, 937
BstMBI	GATC	3 cut(s)	466, 613, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 918
BstSFI	CTRYAG	1 cut(s)	533
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	267, 572
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	5 cut(s)	291, 355, 544, 640, 832
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	3 cut(s)	484, 606, 928
Cac8I	GCNNGC	1 cut(s)	444
CciI	TCATGA	2 cut(s)	358, 448
Cfr13I	GGNCC	2 cut(s)	25, 574
Csp6I	GTAC	1 cut(s)	845
CviAII	CATG	5 cut(s)	274, 338, 359, 449, 639
CviQI	GTAC	1 cut(s)	845
DdeI	CTNAG	5 cut(s)	65, 212, 600, 609, 630
DpnI	GATC	3 cut(s)	468, 615, 777
DpnII	GATC	3 cut(s)	466, 613, 775
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	564, 735, 948
EcoT22I	ATGCAT	2 cut(s)	433, 640
EcoT38I	GRGCYC	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	5 cut(s)	277, 341, 362, 452, 642
FaqI	GGGAC	2 cut(s)	11, 415
FatI	CATG	5 cut(s)	273, 337, 358, 448, 638
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	281, 561
FokI	GGATG	5 cut(s)	298, 362, 551, 647, 839
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	281, 561
FspBI	CTAG	2 cut(s)	564, 952
GluI	GCNGC	2 cut(s)	281, 561
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	575
Hin1II	CATG	5 cut(s)	277, 341, 362, 452, 642
HincII	GTYRAC	2 cut(s)	652, 894
HindII	GTYRAC	2 cut(s)	652, 894
HinfI	GANTC	2 cut(s)	39, 794
HphI	GGTGA	3 cut(s)	162, 704, 842
Hpy166II	GTNNAC	4 cut(s)	38, 442, 652, 894
Hpy188I	TCNGA	2 cut(s)	780, 874
Hpy188III	TCNNGA	5 cut(s)	192, 359, 449, 632, 942
Hpy8I	GTNNAC	4 cut(s)	38, 442, 652, 894
HpyAV	CCTTC	4 cut(s)	177, 211, 290, 759
HpyCH4III	ACNGT	3 cut(s)	35, 593, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 918
HpyF3I	CTNAG	5 cut(s)	65, 212, 600, 609, 630
Hsp92II	CATG	5 cut(s)	277, 341, 362, 452, 642
Kzo9I	GATC	3 cut(s)	466, 613, 775
LmnI	GCTCC	3 cut(s)	160, 388, 771
Lsp1109I	GCAGC	2 cut(s)	267, 572
LweI	GCATC	7 cut(s)	214, 267, 397, 418, 445, 529, 625
MaeI	CTAG	2 cut(s)	564, 952
MaeIII	GTNAC	3 cut(s)	142, 623, 678
MalI	GATC	3 cut(s)	468, 615, 777
MboI	GATC	3 cut(s)	466, 613, 775
MfeI	CAATTG	3 cut(s)	152, 582, 735
MhlI	GDGCHC	2 cut(s)	444, 532
MluCI	AATT	5 cut(s)	20, 152, 582, 735, 886
MlyI	GAGTC	2 cut(s)	33, 803
MmeI	TCCRAC	1 cut(s)	682
Mph1103I	ATGCAT	2 cut(s)	433, 640
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	3 cut(s)	342, 447, 453
MunI	CAATTG	3 cut(s)	152, 582, 735
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	233, 918
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	3 cut(s)	466, 613, 775
NlaIII	CATG	5 cut(s)	277, 341, 362, 452, 642
NlaIV	GGNNCC	2 cut(s)	27, 162
NsiI	ATGCAT	2 cut(s)	433, 640
PagI	TCATGA	2 cut(s)	358, 448
PkrI	GCNGC	2 cut(s)	282, 562
PleI	GAGTC	2 cut(s)	33, 802
PpsI	GAGTC	2 cut(s)	33, 802
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	27, 162
PspPI	GGNCC	2 cut(s)	25, 574
PstI	CTGCAG	1 cut(s)	537
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
RseI	CAYNNNNRTG	3 cut(s)	342, 447, 453
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	281, 561
Sau3AI	GATC	3 cut(s)	466, 613, 775
Sau96I	GGNCC	2 cut(s)	25, 574
SbfI	CCTGCAGG	1 cut(s)	537
ScaI	AGTACT	1 cut(s)	846
SchI	GAGTC	2 cut(s)	33, 803
SdaI	CCTGCAGG	1 cut(s)	537
SduI	GDGCHC	2 cut(s)	444, 532
SfaNI	GCATC	7 cut(s)	214, 267, 397, 418, 445, 529, 625
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	342, 447, 453
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse8387I	CCTGCAGG	1 cut(s)	537
Sse9I	AATT	5 cut(s)	20, 152, 582, 735, 886
SsiI	CCGC	4 cut(s)	108, 158, 182, 283
SspMI	CTAG	2 cut(s)	564, 952
TaaI	ACNGT	3 cut(s)	35, 593, 844
TaqI	TCGA	2 cut(s)	222, 244
TasI	AATT	5 cut(s)	20, 152, 582, 735, 886
TatI	WGTACW	1 cut(s)	844
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	3 cut(s)	484, 613, 928
TseI	GCWGC	2 cut(s)	280, 560
TspDTI	ATGAA	5 cut(s)	302, 309, 347, 435, 732
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	484, 613, 928
VneI	GTGCAC	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	2 cut(s)	564, 952
ZrmI	AGTACT	1 cut(s)	846
Zsp2I	ATGCAT	2 cut(s)	433, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.