Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010233

Physical Location & Seq

Genomic Coordinates Reverse (-)

92729492 .. 92735265

Gene Structure 5774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00156230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGAACCACAACGCGAAATTGGTCCCTAACGGTGGACTCAAACCTAACCCCAGCAACAACCTTAGCGAACAAGAACAAGAAGAGAACCCTACTCTTAATCGTTGCGGAGAAGAAGAAAAAGAAGAAGAAGAAGAAGTAACTACGCAATTGGCGGAGCCTCCTTCACCTAATGCCCCGCAGTCCTCAAGAACTCCCTTCACTAATCTCAGTCAGGTCGATGCTGACCTTGCTCTTGCTCGAACTCTCCAAGAACAGGAAAGGGCATACATGATGCTGCGGATGAACAATGAAGGGAGTGATTATGGCAGTTGGGAAGCTGGAAGTTATGTGCATGATGATGAGGATGATTTTCATGATGATACTGACGGAAATGATGATGAGGAGCAATATGATGGGACTGATGCTGACAATGATGAAGAAGATGCATTTGATGTGCACGATCATGAAGATGCTGGAGACGATCATAACCCCAGTGTCGTATATGACCCTGCTGTTTTTTCAAGTGATGAGGCGTATGCAAGAGCCCTGCAGGATGCTGAAGATAGAGATATGGCAGCTAGACTGATGGCCCTTGCAATTGATGACCGTGAAGCTGAGGACACTGAGGATCAGGGAGGTAACTCTCAGGATGCATGGGAGGAGGTTGACCCAGATGAGCTTTCATATGAGGAGTTACTTGCATTGGGTGAAGTTGTTGGAACAGAGAGCAGAGGGCTTTCTGCTGATACAATTGCTTCATTGCCTTCAGTAAGCTACAAAATGGGGAGCGATCAGAATGGAAGCAATGAGTCGTGTGTCATTTGTCGGTTAGATTATGAGGATGGTGAAAACTTGACAGTACTTTCTTGCAAACACTCTTATCATTCTGGTTGCATAAATAATTGGTTGACAATAAACAAGGTCTGCCCAGTTTGCAGTGCTGAAGTCTCCACATCTGGAAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

316

Amino Acids

34.81

Weight (kDa)

4.05

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	261 - 306	2.7e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	265 - 306	1e-12	Ring finger domain
zf-C3HC4_2	PF13923	266 - 306	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	266 - 293	1.8e-07	RING-like zinc finger
zf-C3HC4	PF00097	266 - 306	8.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	266 - 307	3.3e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19910 AT3G19910
fragaria_vesca	FvH4_1g00010
malus_domestica	MD00G1145000.v1.1 MD15G1141500.v1.1
prunus_persica	Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1
pyrus_communis	pycom15g12780 pycom290g00050
rosa_chinensis	RchiOBHm_Chr2g0084221
rosa_laevigata	RLG00000015601
rosa_multiflora	Rmu_sc0003129.1_g000024
rosa_roxburghii	Rroxscaffold_2G00156230
rosa_rugosa	Rorug01G0451900 Rorug01G0451900
rosa_samantha	Rh2AG000200 Rh2BG000100 Rh2CG000100 Rh2DG000200
rosa_wichuraiana	Rw2G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	108, 155, 179, 280
AclWI	GGATC	1 cut(s)	618
AcuI	CTGAAG	3 cut(s)	561, 732, 945
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	2 cut(s)	35, 256
AgsI	TTSAA	1 cut(s)	504
AluBI	AGCT	6 cut(s)	320, 560, 596, 661, 756, 948
AluI	AGCT	6 cut(s)	320, 560, 596, 661, 756, 948
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	453, 934
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	1 cut(s)	570
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	277, 557
AspS9I	GGNCC	2 cut(s)	25, 571
AsuHPI	GGTGA	3 cut(s)	159, 701, 839
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	264, 569
BccI	CCATC	3 cut(s)	389, 562, 818
BcoDI	GTCTC	2 cut(s)	453, 934
BfaI	CTAG	2 cut(s)	561, 949
BfmI	CTRYAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	278, 558
BlsI	GCNGC	2 cut(s)	279, 559
BmcAI	AGTACT	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 571
BmiI	GGNNCC	2 cut(s)	27, 159
BmrI	ACTGGG	2 cut(s)	468, 905
BmsI	GCATC	7 cut(s)	211, 264, 394, 415, 442, 526, 622
BmuI	ACTGGG	2 cut(s)	468, 905
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	2 cut(s)	65, 597
BpuEI	CTTGAG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 256
Bse1I	ACTGG	2 cut(s)	474, 911
Bse3DI	GCAATG	2 cut(s)	740, 793
BseGI	GGATG	5 cut(s)	288, 352, 541, 637, 829
BseLI	CCNNNNNNNGG	2 cut(s)	35, 256
BseMI	GCAATG	2 cut(s)	740, 793
BseMII	CTCAG	4 cut(s)	223, 588, 597, 641
BseNI	ACTGG	2 cut(s)	474, 911
BseRI	GAGGAG	3 cut(s)	398, 656, 686
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	264, 569
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	11, 412
BslI	CCNNNNNNNGG	2 cut(s)	35, 256
BsmAI	GTCTC	2 cut(s)	453, 934
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	11, 412
BsnI	GGCC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	441, 529
Bsp143I	GATC	4 cut(s)	442, 463, 610, 772
BspACI	CCGC	4 cut(s)	108, 155, 179, 280
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	4 cut(s)	222, 589, 598, 640
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	2 cut(s)	355, 445
BspLI	GGNNCC	2 cut(s)	27, 159
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	618
BsrDI	GCAATG	2 cut(s)	740, 793
BsrI	ACTGG	2 cut(s)	474, 911
BssMI	GATC	4 cut(s)	442, 463, 610, 772
Bst4CI	ACNGT	3 cut(s)	35, 590, 841
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	65, 209, 597, 606, 627
BstF5I	GGATG	5 cut(s)	288, 352, 541, 637, 829
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	4 cut(s)	445, 466, 613, 775
BstMAI	GTCTC	2 cut(s)	453, 934
BstMBI	GATC	4 cut(s)	442, 463, 610, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 915
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	264, 569
BsuRI	GGCC	1 cut(s)	572
BtsCI	GGATG	5 cut(s)	288, 352, 541, 637, 829
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	3 cut(s)	481, 603, 925
CciI	TCATGA	2 cut(s)	355, 445
Cfr13I	GGNCC	2 cut(s)	25, 571
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	5 cut(s)	271, 335, 356, 446, 636
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	5 cut(s)	65, 209, 597, 606, 627
DpnI	GATC	4 cut(s)	444, 465, 612, 774
DpnII	GATC	4 cut(s)	442, 463, 610, 772
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	561, 732, 945
EcoT22I	ATGCAT	2 cut(s)	430, 637
EcoT38I	GRGCYC	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	5 cut(s)	274, 338, 359, 449, 639
FaqI	GGGAC	2 cut(s)	11, 412
FatI	CATG	5 cut(s)	270, 334, 355, 445, 635
FauI	CCCGC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	278, 558
FokI	GGATG	5 cut(s)	295, 359, 548, 644, 836
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	278, 558
FspBI	CTAG	2 cut(s)	561, 949
GluI	GCNGC	2 cut(s)	278, 558
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	572
Hin1II	CATG	5 cut(s)	274, 338, 359, 449, 639
HincII	GTYRAC	2 cut(s)	649, 891
HindII	GTYRAC	2 cut(s)	649, 891
HinfI	GANTC	2 cut(s)	39, 791
HphI	GGTGA	3 cut(s)	159, 701, 839
Hpy166II	GTNNAC	4 cut(s)	38, 439, 649, 891
Hpy188I	TCNGA	1 cut(s)	777
Hpy188III	TCNNGA	5 cut(s)	189, 356, 446, 629, 939
Hpy8I	GTNNAC	4 cut(s)	38, 439, 649, 891
HpyAV	CCTTC	4 cut(s)	174, 208, 287, 756
HpyCH4III	ACNGT	3 cut(s)	35, 590, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 915
HpyF3I	CTNAG	5 cut(s)	65, 209, 597, 606, 627
Hsp92II	CATG	5 cut(s)	274, 338, 359, 449, 639
Kzo9I	GATC	4 cut(s)	442, 463, 610, 772
LmnI	GCTCC	3 cut(s)	157, 385, 768
Lsp1109I	GCAGC	2 cut(s)	264, 569
LweI	GCATC	7 cut(s)	211, 264, 394, 415, 442, 526, 622
MaeI	CTAG	2 cut(s)	561, 949
MaeIII	GTNAC	3 cut(s)	139, 620, 675
MalI	GATC	4 cut(s)	444, 465, 612, 774
MboI	GATC	4 cut(s)	442, 463, 610, 772
MfeI	CAATTG	3 cut(s)	149, 579, 732
MhlI	GDGCHC	2 cut(s)	441, 529
MluCI	AATT	5 cut(s)	20, 149, 579, 732, 883
MlyI	GAGTC	2 cut(s)	33, 800
MmeI	TCCRAC	1 cut(s)	679
Mph1103I	ATGCAT	2 cut(s)	430, 637
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	3 cut(s)	339, 444, 450
MunI	CAATTG	3 cut(s)	149, 579, 732
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	230, 915
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	442, 463, 610, 772
NlaIII	CATG	5 cut(s)	274, 338, 359, 449, 639
NlaIV	GGNNCC	2 cut(s)	27, 159
NsiI	ATGCAT	2 cut(s)	430, 637
PagI	TCATGA	2 cut(s)	355, 445
PkrI	GCNGC	2 cut(s)	279, 559
PleI	GAGTC	2 cut(s)	33, 799
PpsI	GAGTC	2 cut(s)	33, 799
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	27, 159
PspPI	GGNCC	2 cut(s)	25, 571
PstI	CTGCAG	1 cut(s)	534
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	3 cut(s)	339, 444, 450
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	278, 558
Sau3AI	GATC	4 cut(s)	442, 463, 610, 772
Sau96I	GGNCC	2 cut(s)	25, 571
SbfI	CCTGCAGG	1 cut(s)	534
ScaI	AGTACT	1 cut(s)	843
SchI	GAGTC	2 cut(s)	33, 800
SdaI	CCTGCAGG	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	441, 529
SfaNI	GCATC	7 cut(s)	211, 264, 394, 415, 442, 526, 622
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	339, 444, 450
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse8387I	CCTGCAGG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	20, 149, 579, 732, 883
SsiI	CCGC	4 cut(s)	108, 155, 179, 280
SspMI	CTAG	2 cut(s)	561, 949
TaaI	ACNGT	3 cut(s)	35, 590, 841
TaqI	TCGA	2 cut(s)	219, 241
TasI	AATT	5 cut(s)	20, 149, 579, 732, 883
TatI	WGTACW	1 cut(s)	841
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	3 cut(s)	481, 610, 925
TseI	GCWGC	2 cut(s)	277, 557
TspDTI	ATGAA	7 cut(s)	299, 306, 344, 432, 462, 654, 729
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	3 cut(s)	481, 610, 925
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	2 cut(s)	561, 949
ZrmI	AGTACT	1 cut(s)	843
Zsp2I	ATGCAT	2 cut(s)	430, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.