AT3G20870

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008630
Physical Location & Seq
Reverse (-)
7309275 .. 7312795
3521 bp
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UTR
Exon/CDS
Intron
AT3G20870.3

Sequence Viewer

Length: 831 bp
ATGGATTCTCAGATGCTCGTGGCGCTTGGACTATCCCTTGTTGGGGGATTAAGTACCTCTTTAGGTGCGCTTTTTGTAGTTCTTAGTGAGACTCCCAATATGAAGATGCTTGGACTTCTACAGGGTTTTGCTTCAGGTCTGATGTTGAGCATATCGTTCTTGGATTTGGCTCATAATGCTATAAACTCTATTGGGTTCTTTAAAGCCAACCTCTGGTTTTTCGGTGGTGTGATATTCTTTGCGTGTATTACCAAATTCATACCCGAACCAACACTTGGTCCTTCTACTGACGGCAAAAGAAGAAAGAAAAATGGAGACGAGGGAGGTAAAGACATGATGAAGAAGCATCGCAAGCAAGTCTTATATAGTGGACTTATAACAGCTATAGGCATAAGCTTGCACAATTTTCCAGAAGGGATGGCTGTATTTCTCGGATCAATAAAGGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAGGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAGCAAATGGCAGGCATTTAAGTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAGTTGGTGGAATCATGGCTTTCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATGCGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGTCTTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAA

Protein Analysis

276

Amino Acids

29.51

Weight (kDa)

8.48

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 104 - 261 2.2e-21 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AccB7I CCANNNNNTGG 2 cut(s) 213, 275
AciI CCGC 1 cut(s) 728
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 42, 43, 213, 275
AflII CTTAAG 1 cut(s) 631
AgsI TTSAA 1 cut(s) 650
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 8 cut(s) 383, 396, 584, 630, 743, 752, 802, 825
AluI AGCT 8 cut(s) 383, 396, 584, 630, 743, 752, 802, 825
Alw26I GTCTC 3 cut(s) 83, 309, 809
AlwI GGATC 1 cut(s) 442
Ama87I CYCGRG 2 cut(s) 497, 622
AoxI GGCC 2 cut(s) 474, 609
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 2 cut(s) 25, 70
AspS9I GGNCC 1 cut(s) 278
AvaI CYCGRG 2 cut(s) 497, 622
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 476
BauI CACGAG 1 cut(s) 17
BccI CCATC 2 cut(s) 412, 485
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BcoDI GTCTC 3 cut(s) 83, 309, 809
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 2 cut(s) 119, 384
BfoI RGCGCY 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 631
BlpI GCTNAGC 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 2 cut(s) 497, 622
BmgT120I GGNCC 1 cut(s) 278
BmsI GCATC 3 cut(s) 3, 96, 355
BpmI CTGGAG 1 cut(s) 818
Bpu1102I GCTNAGC 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 498
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 43, 213, 275
Bse3DI GCAATG 1 cut(s) 692
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 4 cut(s) 42, 43, 213, 275
BseMI GCAATG 1 cut(s) 692
BseMII CTCAG 4 cut(s) 23, 576, 794, 804
BshFI GGCC 2 cut(s) 476, 611
BsiHKCI CYCGRG 2 cut(s) 497, 622
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 4 cut(s) 42, 43, 213, 275
BsmAI GTCTC 3 cut(s) 83, 309, 809
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 744
BsnI GGCC 2 cut(s) 476, 611
BsoBI CYCGRG 2 cut(s) 497, 622
Bsp143I GATC 1 cut(s) 434
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 1 cut(s) 728
BspANI GGCC 2 cut(s) 476, 611
BspCNI CTCAG 4 cut(s) 22, 577, 795, 805
BspPI GGATC 1 cut(s) 442
BspTI CTTAAG 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 692
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 1 cut(s) 434
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 1 cut(s) 703
BstC8I GCNNGC 4 cut(s) 353, 398, 449, 552
BstDEI CTNAG 5 cut(s) 9, 83, 585, 803, 813
BstF5I GGATG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 70
BstKTI GATC 1 cut(s) 437
BstMAI GTCTC 3 cut(s) 83, 309, 809
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 6 cut(s) 22, 176, 352, 703, 749, 808
BstNSI RCATGY 2 cut(s) 451, 774
BstSFI CTRYAG 2 cut(s) 119, 384
BsuRI GGCC 2 cut(s) 476, 611
BtgZI GCGATG 2 cut(s) 332, 463
BtsCI GGATG 1 cut(s) 423
Cac8I GCNNGC 4 cut(s) 353, 398, 449, 552
CfoI GCGC 2 cut(s) 25, 70
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 54
CviAII CATG 5 cut(s) 334, 448, 679, 766, 771
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 5 cut(s) 9, 83, 585, 803, 813
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
DraI TTTAAA 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 497, 622
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 5 cut(s) 337, 451, 682, 769, 774
FalI AAGNNNNNCTT 4 cut(s) 43, 75, 344, 376
FaqI GGGAC 1 cut(s) 744
FatI CATG 5 cut(s) 333, 447, 678, 765, 770
FauI CCCGC 1 cut(s) 721
FokI GGATG 1 cut(s) 430
FspBI CTAG 1 cut(s) 593
GlaI GCGC 2 cut(s) 24, 69
GsuI CTGGAG 1 cut(s) 818
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 476, 611
HhaI GCGC 2 cut(s) 25, 70
Hin1II CATG 5 cut(s) 337, 451, 682, 769, 774
Hin6I GCGC 2 cut(s) 23, 68
HinP1I GCGC 2 cut(s) 23, 68
HindIII AAGCTT 2 cut(s) 394, 628
HinfI GANTC 4 cut(s) 5, 91, 675, 784
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 12, 141, 434
Hpy188III TCNNGA 5 cut(s) 410, 497, 622, 638, 797
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 291, 407, 644
HpyCH4V TGCA 5 cut(s) 400, 509, 515, 533, 697
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 176, 352, 703, 749, 808
HpyF3I CTNAG 5 cut(s) 9, 83, 585, 803, 813
Hsp92II CATG 5 cut(s) 337, 451, 682, 769, 774
HspAI GCGC 2 cut(s) 23, 68
Kzo9I GATC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 662, 799
LweI GCATC 3 cut(s) 3, 96, 355
MaeI CTAG 1 cut(s) 593
MalI GATC 1 cut(s) 436
MboI GATC 1 cut(s) 434
MboII GAAGA 3 cut(s) 115, 312, 352
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 3 cut(s) 254, 403, 600
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 2 cut(s) 85, 793
MnlI CCTC 6 cut(s) 67, 221, 313, 317, 493, 600
Mox20I TGGCCA 1 cut(s) 476
MroXI GAANNNNTTC 1 cut(s) 705
MscI TGGCCA 1 cut(s) 476
MseI TTAA 5 cut(s) 50, 201, 462, 558, 632
Msp20I TGGCCA 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 631
MwoI GCNNNNNNNGC 6 cut(s) 22, 176, 352, 703, 749, 808
NdeII GATC 1 cut(s) 434
NlaIII CATG 5 cut(s) 337, 451, 682, 769, 774
NspI RCATGY 2 cut(s) 451, 774
PaeI GCATGC 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 2 cut(s) 5, 675
PflMI CCANNNNNTGG 2 cut(s) 213, 275
PleI GAGTC 2 cut(s) 85, 792
PpsI GAGTC 2 cut(s) 85, 792
PsiI TTATAA 1 cut(s) 377
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 5 cut(s) 50, 201, 462, 558, 632
Sau3AI GATC 1 cut(s) 434
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 85, 793
SfaNI GCATC 3 cut(s) 3, 96, 355
SfcI CTRYAG 2 cut(s) 119, 384
SinI GGWCC 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SphI GCATGC 1 cut(s) 451
Sse9I AATT 3 cut(s) 254, 403, 600
SsiI CCGC 1 cut(s) 728
SspMI CTAG 1 cut(s) 593
TasI AATT 3 cut(s) 254, 403, 600
TfiI GAWTC 2 cut(s) 5, 675
Tru1I TTAA 5 cut(s) 50, 201, 462, 558, 632
Tru9I TTAA 5 cut(s) 50, 201, 462, 558, 632
TspDTI ATGAA 3 cut(s) 116, 247, 353
Van91I CCANNNNNTGG 2 cut(s) 213, 275
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 254
XceI RCATGY 2 cut(s) 451, 774
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.