Rroxscaffold_1G00005000

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008630
Physical Location & Seq
Forward (+)
6791674 .. 6796481
4808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005000.1

Sequence Viewer

Length: 1074 bp
ATGGATTCTCAGGTCTTGGTTGCTCTCGCACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGAGTTTATTGAACCTTATGCTTTGTTCTTCACGTACCCAGTTGAGTGTTTTGGAATTCCAGTTGCCCCATTTCGTTGTGCTCTTTTTGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTTGATTTGGCTCACAATGCTATAAACTCAATAGGATTTTTAAAAGCCAACTTATGGTTTTTTGCTGGTGTGATATTCTTTGCTGTAATTGCCAATTTTATTCCGGAACCATCACTTGCTCCTAGTTCAGATGTGAAAAGTAAAAAGAAAGGCGGGGATGAAGGGGGAAAAGACACTTTGAAGAAGCATCGCCGTCAAGTATTATTCAGTGGAATTGTTACAGCAATAGGCATAAGTTTACACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGCCTCCGTGTTGGTGTCAATTTGGCTTTGGCTATTGCCTTACACAATATCCCAGAGGGAGTTGCTGTTGCACTTCCTGTCTACTTTGCAACACAGAGAAGGTGGGGGGCAGGGAGTAGCGGTAGTGATGATGGAGAAGGCAGTGGTGATATGTGGAGGTTGCGATGGCCGGTAGTTCTGTCATTGTTGTATATGGGCAGAGTTTTTGTTGTTACAGCAACCATGTCGGTGTTGGAAGGAGATGATGCTTGTGATCGTGCACGCAAATGGCAGGCGTTCAAATTGGCGACACTTTCTGGTTTTGCTGAACCTTTGGGTGTTATAATTGTAGCCTATCTATTCCCGAGCAGCTTGAATCCAGAAATTCTTGAAGGCCTTCTAGGAGCAGTTGGTGGAGTGATGGCTTTTTTAACTCTGCATGAGATGCTGCCCTTGGCATTTGATTATGCAGGGCAGAAGCAAGCTATCAAGGCTGTGTTTTTGGGAATGGCTTTCATGTCTGCAAGCCTATACTTCCTTGAAATCAGCCTACCTGCGGAAATGAGCTTGTAG

Protein Analysis

357

Amino Acids

38.27

Weight (kDa)

5.98

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 125 - 209 2.2e-11 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
Acc36I ACCTGC 2 cut(s) 203, 1063
AccB7I CCANNNNNTGG 1 cut(s) 291
AccI GTMKAC 1 cut(s) 603
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 3 cut(s) 390, 642, 1058
AclWI GGATC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 689
AcsI RAATTY 2 cut(s) 120, 885
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 2 cut(s) 55, 101
AfiI CCNNNNNNNGG 3 cut(s) 244, 291, 1057
AgsI TTSAA 7 cut(s) 77, 181, 418, 802, 877, 893, 1043
AluBI AGCT 3 cut(s) 873, 986, 1068
AluI AGCT 3 cut(s) 873, 986, 1068
Alw21I GWGCWC 2 cut(s) 148, 784
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 865
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 3 cut(s) 523, 689, 895
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 3 cut(s) 209, 870, 949
ApoI RAATTY 2 cut(s) 120, 885
Asp700I GAANNNNTTC 1 cut(s) 897
AspS9I GGNCC 1 cut(s) 523
AsuHPI GGTGA 2 cut(s) 77, 680
AvaI CYCGRG 1 cut(s) 865
BaeGI GKGCMC 1 cut(s) 784
Bbv12I GWGCWC 2 cut(s) 148, 784
BbvI GCAGC 3 cut(s) 196, 882, 936
BccI CCATC 4 cut(s) 355, 647, 681, 916
BceAI ACGGC 1 cut(s) 414
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BfaI CTAG 2 cut(s) 360, 902
BfmI CTRYAG 1 cut(s) 210
BfuAI ACCTGC 2 cut(s) 203, 1063
BisI GCNGC 3 cut(s) 210, 871, 950
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 3 cut(s) 211, 872, 951
BmcAI AGTACT 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 865
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 2 cut(s) 171, 345
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 5 cut(s) 174, 210, 433, 757, 936
BmuI ACTGGG 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu1102I GCTNAGC 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 508, 954
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 4 cut(s) 573, 603, 628, 658
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 291, 1057
Bse118I RCCGGY 1 cut(s) 691
Bse1I ACTGG 2 cut(s) 104, 125
BseAI TCCGGA 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 508, 954
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 244, 291, 1057
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 104, 125
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 3 cut(s) 196, 882, 936
BshFI GGCC 3 cut(s) 525, 691, 897
BsiHKAI GWGCWC 2 cut(s) 148, 784
BsiHKCI CYCGRG 1 cut(s) 865
BsiSI CCGG 2 cut(s) 341, 692
BslI CCNNNNNNNGG 3 cut(s) 244, 291, 1057
BsnI GGCC 3 cut(s) 525, 691, 897
BsoBI CYCGRG 1 cut(s) 865
Bsp1286I GDGCHC 2 cut(s) 148, 784
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 512, 775
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 3 cut(s) 390, 642, 1058
BspANI GGCC 3 cut(s) 525, 691, 897
BspCNI CTCAG 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 171, 345
BspMAI CTGCAG 1 cut(s) 214
BspMI ACCTGC 2 cut(s) 203, 1063
BspPI GGATC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 691
BsrI ACTGG 2 cut(s) 104, 125
BssAI RCCGGY 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 508, 954
BssMI GATC 2 cut(s) 512, 775
BssT1I CCWWGG 2 cut(s) 508, 954
BstAPI GCANNNNNTGC 1 cut(s) 946
BstBAI YACGTR 1 cut(s) 99
BstC8I GCNNGC 4 cut(s) 784, 795, 984, 1027
BstDEI CTNAG 2 cut(s) 9, 224
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 515, 778
BstMBI GATC 2 cut(s) 512, 775
BstMWI GCNNNNNNNGC 4 cut(s) 254, 326, 946, 992
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 196, 882, 936
BsuRI GGCC 3 cut(s) 525, 691, 897
BtgZI GCGATG 2 cut(s) 410, 700
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 2 cut(s) 507, 670
BtsIMutI CAGTG 3 cut(s) 451, 507, 670
BveI ACCTGC 2 cut(s) 203, 1063
Cac8I GCNNGC 4 cut(s) 784, 795, 984, 1027
Cfr10I RCCGGY 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 523
Csp6I GTAC 2 cut(s) 54, 100
CviAII CATG 3 cut(s) 745, 941, 1018
CviQI GTAC 2 cut(s) 54, 100
DdeI CTNAG 2 cut(s) 9, 224
DpnI GATC 2 cut(s) 514, 777
DpnII GATC 2 cut(s) 512, 775
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 508, 954
Eco147I AGGCCT 1 cut(s) 897
Eco57I CTGAAG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 508, 954
ErhI CCWWGG 2 cut(s) 508, 954
FaeI CATG 3 cut(s) 748, 944, 1021
FatI CATG 3 cut(s) 744, 940, 1017
FauI CCCGC 1 cut(s) 383
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 3 cut(s) 210, 871, 950
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 210, 871, 950
FspBI CTAG 2 cut(s) 360, 902
GluI GCNGC 3 cut(s) 210, 871, 950
HaeIII GGCC 3 cut(s) 525, 691, 897
HapII CCGG 2 cut(s) 341, 692
Hin1II CATG 3 cut(s) 748, 944, 1021
HinfI GANTC 2 cut(s) 5, 877
HpaII CCGG 2 cut(s) 341, 692
HphI GGTGA 2 cut(s) 77, 680
Hpy166II GTNNAC 3 cut(s) 476, 604, 782
Hpy188I TCNGA 2 cut(s) 219, 367
Hpy188III TCNNGA 5 cut(s) 341, 488, 865, 881, 890
Hpy8I GTNNAC 3 cut(s) 476, 604, 782
HpyAV CCTTC 8 cut(s) 392, 485, 514, 615, 653, 752, 887, 908
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 7 cut(s) 212, 593, 611, 782, 940, 971, 1025
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 326, 946, 992
HpyF3I CTNAG 2 cut(s) 9, 224
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 3 cut(s) 748, 944, 1021
Kpn2I TCCGGA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 512, 775
LmnI GCTCC 3 cut(s) 175, 361, 905
Lsp1109I GCAGC 3 cut(s) 196, 882, 936
LweI GCATC 5 cut(s) 174, 210, 433, 757, 936
MaeI CTAG 2 cut(s) 360, 902
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 454, 733
MalI GATC 2 cut(s) 514, 777
MboI GATC 2 cut(s) 512, 775
MboII GAAGA 3 cut(s) 85, 193, 430
MhlI GDGCHC 2 cut(s) 148, 784
MmeI TCCRAC 1 cut(s) 735
MnlI CCTC 4 cut(s) 160, 536, 571, 672
MroI TCCGGA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 2 cut(s) 278, 932
MslI CAYNNNNRTG 2 cut(s) 749, 787
MspI CCGG 2 cut(s) 341, 692
MwoI GCNNNNNNNGC 4 cut(s) 254, 326, 946, 992
NdeII GATC 2 cut(s) 512, 775
NlaIII CATG 3 cut(s) 748, 944, 1021
NlaIV GGNNCC 2 cut(s) 171, 345
PceI AGGCCT 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 2 cut(s) 5, 877
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 3 cut(s) 211, 872, 951
Ppu21I YACGTR 1 cut(s) 99
PsiI TTATAA 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 171, 345
PspPI GGNCC 1 cut(s) 523
PstI CTGCAG 1 cut(s) 214
RsaI GTAC 2 cut(s) 55, 101
RsaNI GTAC 2 cut(s) 54, 100
RseI CAYNNNNRTG 2 cut(s) 749, 787
SaqAI TTAA 2 cut(s) 278, 932
SatI GCNGC 3 cut(s) 210, 871, 950
Sau3AI GATC 2 cut(s) 512, 775
Sau96I GGNCC 1 cut(s) 523
ScaI AGTACT 1 cut(s) 55
SduI GDGCHC 2 cut(s) 148, 784
SfaNI GCATC 5 cut(s) 174, 210, 433, 757, 936
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 749, 787
SseBI AGGCCT 1 cut(s) 897
SsiI CCGC 3 cut(s) 390, 642, 1058
SspMI CTAG 2 cut(s) 360, 902
StuI AGGCCT 1 cut(s) 897
StyI CCWWGG 2 cut(s) 508, 954
TaiI ACGT 1 cut(s) 101
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 5, 877
Tru1I TTAA 2 cut(s) 278, 932
Tru9I TTAA 2 cut(s) 278, 932
TscAI CASTG 3 cut(s) 451, 507, 670
TseI GCWGC 3 cut(s) 209, 870, 949
TspDTI ATGAA 3 cut(s) 411, 533, 1006
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 451, 507, 670
Van91I CCANNNNNTGG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 780
XapI RAATTY 2 cut(s) 120, 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 2 cut(s) 360, 902
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.