RchiOBHm_Chr5g0077111

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008630
Physical Location & Seq
Reverse (-)
82934869 .. 82940004
5136 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35171

Sequence Viewer

Length: 1017 bp
ATGCTTGGACCACCCTTTCAAACATCTCTTTCTTCCCCTATAAAACAACCCAAATTCCCTCTCTCCCTCCCCTCTATATATATATTTAGCTCCGAGGAGTCTGCCATTTTAGTGTGTTCTCAGTCACTCTCTGTCAAACTCTTTTCAATTCTCAACCTGAGTTCTTTTGGGTGGTCAAAGCCCTCCATGGATTCTCAGGTCTTGGTGGCTCTCGCACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGCTCTTTTCGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTTGATTTGGCTCACAATGCTATAAACTCAATAGGATTTTTAAAAGCCAACATATGGTTTTTTGCTGGTGTGTTATTCTTTGCCATAATTGCCAATTTTATTCCAGAACCATCACTTGCTCCTAGTTCAGATGTGAAAAGTAAAAAGAAAGGCGGGGATGAAGGGGGAAAAGACACTTTGAAGAAGCATCGCCGTCAAGTATTATTCAGTGGAATTGTTACAGCAATAGGCATAAGTTTGCACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGACTCCGTGTTGGTGTCAATTTGGCTTTGGCTATTGCCTTACACAATATCCCAGAGGGAGTTGCTGTTGCACTTCCTGTCTACTTTGCAACACAGAGCAAATGGCAGGCATTCAAATTGGCGACACTTTCTGGTTTTGCTGAACCTTTGGGTGTTATAATTGTAGCCTATCTATTCCCGAGCAGCTTGAATCCAGAAATTCTTGAAGGCCTTCTAGGAGCAGTTGGTGGAGTGATGGCTTTTTTAACTCTGCATGAGATGCTGCCCTTGGCATTTGATTATGCAGGGCAGAAGCAAGCTATCAAGGCTGTGTTTTTGGGAATGGCTTTCATGTCTGCAAGCCTATATTTCCTTGAAATCAGCCTACCTGCGGAAATGAGCTTGTAG

Protein Analysis

338

Amino Acids

35.93

Weight (kDa)

8.55

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 161 - 323 2.3e-22 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
Acc36I ACCTGC 2 cut(s) 311, 1006
AccB7I CCANNNNNTGG 1 cut(s) 399
AccI GTMKAC 1 cut(s) 711
AciI CCGC 2 cut(s) 498, 1001
AclWI GGATC 1 cut(s) 628
AcsI RAATTY 2 cut(s) 53, 828
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 352, 399, 1000
AgsI TTSAA 8 cut(s) 20, 147, 289, 526, 745, 820, 836, 986
AluBI AGCT 4 cut(s) 90, 816, 929, 1011
AluI AGCT 4 cut(s) 90, 816, 929, 1011
Alw21I GWGCWC 1 cut(s) 256
AlwI GGATC 1 cut(s) 628
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 1 cut(s) 838
ApeKI GCWGC 3 cut(s) 317, 813, 892
ApoI RAATTY 2 cut(s) 53, 828
Asp700I GAANNNNTTC 1 cut(s) 840
AspS9I GGNCC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 304, 825, 879
BccI CCATC 2 cut(s) 463, 859
BceAI ACGGC 1 cut(s) 522
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BfaI CTAG 2 cut(s) 468, 845
BfmI CTRYAG 1 cut(s) 318
BfuAI ACCTGC 2 cut(s) 311, 1006
BisI GCNGC 3 cut(s) 318, 814, 893
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 3 cut(s) 319, 815, 894
BmcAI AGTACT 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 4 cut(s) 282, 318, 541, 879
BplI GAGNNNNNCTC 2 cut(s) 229, 261
Bpu1102I GCTNAGC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 93, 186, 616, 897
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 399, 1000
BseDI CCNNGG 4 cut(s) 93, 186, 616, 897
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 3 cut(s) 352, 399, 1000
BseMII CTCAG 3 cut(s) 134, 149, 209
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 3 cut(s) 304, 825, 879
BshFI GGCC 1 cut(s) 840
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 808
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 3 cut(s) 352, 399, 1000
BsmFI GGGAC 1 cut(s) 645
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 1 cut(s) 840
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 620
Bsp1720I GCTNAGC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 2 cut(s) 498, 1001
BspANI GGCC 1 cut(s) 840
BspCNI CTCAG 3 cut(s) 133, 150, 208
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 2 cut(s) 311, 1006
BspPI GGATC 1 cut(s) 628
BssECI CCNNGG 4 cut(s) 93, 186, 616, 897
BssMI GATC 1 cut(s) 620
BssT1I CCWWGG 3 cut(s) 186, 616, 897
BstAPI GCANNNNNTGC 1 cut(s) 889
BstC8I GCNNGC 3 cut(s) 738, 927, 970
BstDEI CTNAG 4 cut(s) 120, 158, 195, 332
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 508
BstKTI GATC 1 cut(s) 623
BstMBI GATC 1 cut(s) 620
BstMWI GCNNNNNNNGC 4 cut(s) 362, 434, 889, 935
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 304, 825, 879
BsuRI GGCC 1 cut(s) 840
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 559, 615
BveI ACCTGC 2 cut(s) 311, 1006
Cac8I GCNNGC 3 cut(s) 738, 927, 970
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 187, 884, 961
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 4 cut(s) 120, 158, 195, 332
DpnI GATC 1 cut(s) 622
DpnII GATC 1 cut(s) 620
DraI TTTAAA 1 cut(s) 387
Eco130I CCWWGG 3 cut(s) 186, 616, 897
Eco147I AGGCCT 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 808
EcoT14I CCWWGG 3 cut(s) 186, 616, 897
ErhI CCWWGG 3 cut(s) 186, 616, 897
FaeI CATG 3 cut(s) 190, 887, 964
FaqI GGGAC 1 cut(s) 645
FatI CATG 3 cut(s) 186, 883, 960
FauI CCCGC 1 cut(s) 491
FauNDI CATATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 3 cut(s) 318, 814, 893
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 3 cut(s) 318, 814, 893
FspBI CTAG 2 cut(s) 468, 845
GluI GCNGC 3 cut(s) 318, 814, 893
HaeIII GGCC 1 cut(s) 840
Hin1II CATG 3 cut(s) 190, 887, 964
HinfI GANTC 4 cut(s) 98, 191, 633, 820
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 3 cut(s) 94, 327, 475
Hpy188III TCNNGA 5 cut(s) 449, 596, 808, 824, 833
Hpy8I GTNNAC 1 cut(s) 712
HpyAV CCTTC 5 cut(s) 500, 593, 622, 830, 851
HpyCH4V TGCA 7 cut(s) 320, 586, 701, 719, 883, 914, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 434, 889, 935
HpyF3I CTNAG 4 cut(s) 120, 158, 195, 332
Hsp92II CATG 3 cut(s) 190, 887, 964
Kzo9I GATC 1 cut(s) 620
LmnI GCTCC 4 cut(s) 95, 283, 469, 848
Lsp1109I GCAGC 3 cut(s) 304, 825, 879
LweI GCATC 4 cut(s) 282, 318, 541, 879
MaeI CTAG 2 cut(s) 468, 845
MaeIII GTNAC 2 cut(s) 123, 562
MalI GATC 1 cut(s) 622
MboI GATC 1 cut(s) 620
MboII GAAGA 3 cut(s) 24, 301, 538
MhlI GDGCHC 1 cut(s) 256
MlyI GAGTC 2 cut(s) 107, 627
MnlI CCTC 7 cut(s) 69, 77, 82, 88, 193, 268, 679
MroXI GAANNNNTTC 1 cut(s) 840
MseI TTAA 2 cut(s) 386, 875
MslI CAYNNNNRTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 740
MwoI GCNNNNNNNGC 4 cut(s) 362, 434, 889, 935
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 398
NdeII GATC 1 cut(s) 620
NlaIII CATG 3 cut(s) 190, 887, 964
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 123
PceI AGGCCT 1 cut(s) 840
PctI GAATGC 1 cut(s) 740
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 2 cut(s) 191, 820
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 3 cut(s) 319, 815, 894
PleI GAGTC 2 cut(s) 106, 627
PpsI GAGTC 2 cut(s) 106, 627
PsiI TTATAA 1 cut(s) 788
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 322
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 386, 875
SatI GCNGC 3 cut(s) 318, 814, 893
Sau3AI GATC 1 cut(s) 620
Sau96I GGNCC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 2 cut(s) 107, 627
SduI GDGCHC 1 cut(s) 256
SetI ASST 9 cut(s) 92, 159, 201, 325, 778, 818, 931, 1000, 1013
SfaNI GCATC 4 cut(s) 282, 318, 541, 879
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 840
SsiI CCGC 2 cut(s) 498, 1001
SspMI CTAG 2 cut(s) 468, 845
StuI AGGCCT 1 cut(s) 840
StyI CCWWGG 3 cut(s) 186, 616, 897
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 191, 820
Tru1I TTAA 2 cut(s) 386, 875
Tru9I TTAA 2 cut(s) 386, 875
TscAI CASTG 2 cut(s) 559, 615
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 3 cut(s) 317, 813, 892
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 3 cut(s) 519, 641, 949
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 2 cut(s) 559, 615
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 2 cut(s) 53, 828
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 2 cut(s) 468, 845
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.