Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008630

Physical Location & Seq

Genomic Coordinates Reverse (-)

85589000 .. 85593517

Gene Structure 4518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG506000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGATTCTCAGGTCTTGGTGGCTCTCGCACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGCACTTTTCGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTTGATTTGGCTCACAATGCTATAAACTCAATAGGATTTTTAAAAGCCAACTTATGGTTTTTTGCTGGTGTGTTATTCTTTGCTGTAATTGCCAATTTTATTCCGGAACCATCACTTGCTCCTAGTTCAGATGTGAAAAGTAAAAAGAAAGGCGGGGATGAAGGGGGAAAAGACACTTTGAAGAAGCATCGCCGTCAAGTATTATTCAGTGGAATTGTTACAGCAATAGGCATAAGTTTGCACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGACTCCGTGTTGGTGTCAATTTGGCTTTGGCTATTGCCTTACACAATATCCCAGAGGGAGTTGCTGTTGCACTTCCTGTCTACTTTGCAACACAGAGCAAATGGCAGGCATTCAAATTGGCGACACTTTCTGGTTTTGCTGAACCTTTGGGTGTTATAATTGTAGCCTATCTATTCCCGAGCAGCTTGAATCCAGAAATTCTTGAAGGCCTTCTAGGAGCAGTTGGTGGAGTGATGGCTTTTTTAACTCTGCATGAGATGCTGCCCTTGGCATTTGATTATGCAGGGCAGAAGCAAGCTATCAAGGCTGTGTTTTTGGGAATGGCTTTCATGTCTGCAAGTGTTGTACATTTCTGTACTGCCATGCACGATAGTCCTCAACTGGTGCTTGTAATCGGCACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

283

Amino Acids

29.86

Weight (kDa)

7.06

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	99 - 261	1.3e-22	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20870 AT3G20870 AT3G20870
fragaria_vesca	FvH4_3g43050 FvH4_3g43050 FvH4_3g43050
malus_domestica	MD03G1024300.v1.1 MD11G1029400.v1.1
prunus_persica	Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1
pyrus_communis	pycom03g02110 pycom11g02290
rosa_chinensis	RchiOBHm_Chr5g0077111
rosa_laevigata	RLG00000036666
rosa_multiflora	Rmu_sc0009061.1_g000002
rosa_roxburghii	Rroxscaffold_1G00005000
rosa_rugosa	Rorug05G0451800
rosa_samantha	Rh5AG506000 Rh5BG527900 Rh5CG552200 Rh5DG540200
rosa_wichuraiana	Rw5G047050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	525
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	3 cut(s)	55, 792, 802
AfiI	CCNNNNNNNGG	2 cut(s)	166, 213
AgsI	TTSAA	5 cut(s)	103, 340, 559, 634, 650
AluBI	AGCT	2 cut(s)	630, 743
AluI	AGCT	2 cut(s)	630, 743
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	622
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	652
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	3 cut(s)	131, 627, 706
ApoI	RAATTY	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	654
AvaI	CYCGRG	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	118, 639, 693
BccI	CCATC	2 cut(s)	277, 673
BceAI	ACGGC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	282, 659
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	132, 628, 707
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	133, 629, 708
BmcAI	AGTACT	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	622
BmiI	GGNNCC	3 cut(s)	93, 267, 844
BmsI	GCATC	4 cut(s)	96, 132, 355, 693
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
Bpu1102I	GCTNAGC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	430, 711
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 213
Bse1I	ACTGG	1 cut(s)	831
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	430, 711
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	166, 213
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	831
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	118, 639, 693
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	166, 213
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	654
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	1 cut(s)	434
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	93, 267, 844
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	842
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	831
BssECI	CCNNGG	2 cut(s)	430, 711
BssMI	GATC	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	430, 711
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	552, 741
BstDEI	CTNAG	2 cut(s)	9, 146
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	437
BstMBI	GATC	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 248, 703, 749
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	118, 639, 693
BsuRI	GGCC	1 cut(s)	654
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	373, 429
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	552, 741
Csp6I	GTAC	3 cut(s)	54, 791, 801
CviAII	CATG	3 cut(s)	698, 775, 808
CviQI	GTAC	3 cut(s)	54, 791, 801
DdeI	CTNAG	2 cut(s)	9, 146
DpnI	GATC	1 cut(s)	436
DpnII	GATC	1 cut(s)	434
DraI	TTTAAA	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	430, 711
Eco147I	AGGCCT	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	430, 711
ErhI	CCWWGG	2 cut(s)	430, 711
FaeI	CATG	3 cut(s)	701, 778, 811
FaiI	YATR	9 cut(s)	152, 182, 214, 392, 602, 699, 726, 776, 809
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	3 cut(s)	697, 774, 807
FauI	CCCGC	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	132, 628, 707
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	132, 628, 707
FspBI	CTAG	2 cut(s)	282, 659
GluI	GCNGC	3 cut(s)	132, 628, 707
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	3 cut(s)	701, 778, 811
HinfI	GANTC	3 cut(s)	5, 447, 634
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	2 cut(s)	68, 526
Hpy188I	TCNGA	2 cut(s)	141, 289
Hpy188III	TCNNGA	5 cut(s)	263, 410, 622, 638, 647
Hpy8I	GTNNAC	2 cut(s)	68, 526
HpyAV	CCTTC	5 cut(s)	314, 407, 436, 644, 665
HpyCH4V	TGCA	9 cut(s)	68, 134, 400, 515, 533, 697, 728, 782, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 248, 703, 749
HpyF3I	CTNAG	2 cut(s)	9, 146
Hsp92II	CATG	3 cut(s)	701, 778, 811
Kpn2I	TCCGGA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	434
LmnI	GCTCC	3 cut(s)	97, 283, 662
Lsp1109I	GCAGC	3 cut(s)	118, 639, 693
LweI	GCATC	4 cut(s)	96, 132, 355, 693
MaeI	CTAG	2 cut(s)	282, 659
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	436
MboI	GATC	1 cut(s)	434
MboII	GAAGA	2 cut(s)	115, 352
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	9 cut(s)	78, 97, 246, 253, 372, 463, 560, 603, 642
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	3 cut(s)	82, 493, 831
MroI	TCCGGA	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	200, 689
MspI	CCGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	176, 248, 703, 749
NdeII	GATC	1 cut(s)	434
NlaIII	CATG	3 cut(s)	701, 778, 811
NlaIV	GGNNCC	3 cut(s)	93, 267, 844
PceI	AGGCCT	1 cut(s)	654
PctI	GAATGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	5, 634
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	133, 629, 708
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	602
PspN4I	GGNNCC	3 cut(s)	93, 267, 844
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	55, 792, 802
RsaNI	GTAC	3 cut(s)	54, 791, 801
SaqAI	TTAA	2 cut(s)	200, 689
SatI	GCNGC	3 cut(s)	132, 628, 707
Sau3AI	GATC	1 cut(s)	434
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	15, 139, 592, 632, 745
SfaNI	GCATC	4 cut(s)	96, 132, 355, 693
SfcI	CTRYAG	1 cut(s)	132
Sse9I	AATT	9 cut(s)	78, 97, 246, 253, 372, 463, 560, 603, 642
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	282, 659
StuI	AGGCCT	1 cut(s)	654
StyI	CCWWGG	2 cut(s)	430, 711
TasI	AATT	9 cut(s)	78, 97, 246, 253, 372, 463, 560, 603, 642
TatI	WGTACW	3 cut(s)	53, 790, 800
TfiI	GAWTC	2 cut(s)	5, 634
Tru1I	TTAA	2 cut(s)	200, 689
Tru9I	TTAA	2 cut(s)	200, 689
TscAI	CASTG	2 cut(s)	373, 429
TseI	GCWGC	3 cut(s)	131, 627, 706
TspDTI	ATGAA	3 cut(s)	333, 455, 763
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	373, 429
Van91I	CCANNNNNTGG	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	642
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	2 cut(s)	282, 659
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.