RLG00000036666

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008630
Physical Location & Seq
Reverse (-)
83087887 .. 83092327
4441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036666

Sequence Viewer

Length: 831 bp
ATGGATTCTCAGGTCTTGGTTGCTCTCGCACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGCTCTTTTCGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGGTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTTGATTTGGCTCACAATGCTATAAACTCAATAGGATTTTTAAAAGCCAACTTATGGTTTTTTGCTGGTGTGTTATTCTTTGCTGTAATTGCCAATTTCATTCCCGAACCATCACTTGCTCCTAGTTCAGATGCAAAAAGTAAAAAGAAAGGCGGGGATGAAGGGGGAAAAGACACTTTGAAGAAGCATCGCCGTCAAGTATTATTCAGTGGAATTGTTACTGCTATAGGCATAAGTTTGCACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGCCTCCGTGTTGGTGTCAATTTGGCTTTGGCTATTGCCTTACACAATATCCCAGAGGGAGTTGCTGTTGCACTTCCTGTCTACTTTGCAACACAGAGCAAATGGCAGGCGTTCAAATTGGCGACACTTTCTGGTTTTGCTGAACCTTTGGGTGTTATAATTGTAGCTTATCTCTTCCCGAGCAGCTTGAATCCAGAAATTCTTGAAGGCCTTCTTGGAGCAGTTGGTGGAGTGATGGCTTTTTTAACTCTGCATGAGATGCTGCCCTTGGCATTTGATTATGCAGGGCAGAAGCAAGCTATCAAGGCTGTGTTTTTGGGAATGGCTTTCATGTCTGCAAGCCTATACTTCCTTGAAATCAGCCTACCTGCGGAAATGAGCTTGTAG

Protein Analysis

277

Amino Acids

29.16

Weight (kDa)

6.97

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 96 - 261 8.1e-23 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
Acc36I ACCTGC 2 cut(s) 125, 820
AccB7I CCANNNNNTGG 1 cut(s) 213
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 312, 815
AclWI GGATC 1 cut(s) 442
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 166, 213, 814
AgsI TTSAA 6 cut(s) 103, 340, 559, 634, 650, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 4 cut(s) 611, 630, 743, 825
AluI AGCT 4 cut(s) 611, 630, 743, 825
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 442
Ama87I CYCGRG 1 cut(s) 622
AoxI GGCC 2 cut(s) 445, 652
ApeKI GCWGC 3 cut(s) 131, 627, 706
ApoI RAATTY 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 118, 639, 693
BccI CCATC 2 cut(s) 277, 673
BceAI ACGGC 1 cut(s) 336
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 2 cut(s) 132, 384
BfuAI ACCTGC 2 cut(s) 125, 820
BisI GCNGC 3 cut(s) 132, 628, 707
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 3 cut(s) 133, 629, 708
BmcAI AGTACT 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 5 cut(s) 96, 132, 280, 355, 693
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu1102I GCTNAGC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 430, 711
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 213, 814
BseDI CCNNGG 2 cut(s) 430, 711
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 3 cut(s) 166, 213, 814
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 118, 639, 693
BshFI GGCC 2 cut(s) 447, 654
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 166, 213, 814
BsnI GGCC 2 cut(s) 447, 654
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 434
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 2 cut(s) 312, 815
BspANI GGCC 2 cut(s) 447, 654
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 2 cut(s) 125, 820
BspPI GGATC 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 430, 711
BssMI GATC 1 cut(s) 434
BssT1I CCWWGG 2 cut(s) 430, 711
Bst6I CTCTTC 1 cut(s) 623
BstAPI GCANNNNNTGC 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 552, 741, 784
BstDEI CTNAG 2 cut(s) 9, 146
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 437
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 4 cut(s) 176, 248, 703, 749
BstSFI CTRYAG 2 cut(s) 132, 384
BstV1I GCAGC 3 cut(s) 118, 639, 693
BsuRI GGCC 2 cut(s) 447, 654
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 373, 429
BveI ACCTGC 2 cut(s) 125, 820
Cac8I GCNNGC 3 cut(s) 552, 741, 784
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 698, 775
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 9, 146
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
DraI TTTAAA 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco130I CCWWGG 2 cut(s) 430, 711
Eco147I AGGCCT 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 430, 711
ErhI CCWWGG 2 cut(s) 430, 711
FaeI CATG 2 cut(s) 701, 778
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 2 cut(s) 697, 774
FauI CCCGC 1 cut(s) 305
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 132, 628, 707
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 132, 628, 707
FspBI CTAG 1 cut(s) 282
GluI GCNGC 3 cut(s) 132, 628, 707
HaeIII GGCC 2 cut(s) 447, 654
Hin1II CATG 2 cut(s) 701, 778
HinfI GANTC 2 cut(s) 5, 634
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 2 cut(s) 141, 289
Hpy188III TCNNGA 5 cut(s) 263, 410, 622, 638, 647
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 5 cut(s) 314, 407, 436, 644, 665
HpyCH4V TGCA 8 cut(s) 134, 293, 400, 515, 533, 697, 728, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 248, 703, 749
HpyF3I CTNAG 2 cut(s) 9, 146
Hsp92II CATG 2 cut(s) 701, 778
Kzo9I GATC 1 cut(s) 434
LmnI GCTCC 3 cut(s) 97, 283, 662
Lsp1109I GCAGC 3 cut(s) 118, 639, 693
LweI GCATC 5 cut(s) 96, 132, 280, 355, 693
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 436
MboI GATC 1 cut(s) 434
MboII GAAGA 3 cut(s) 115, 352, 610
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 9 cut(s) 78, 97, 246, 253, 372, 463, 560, 603, 642
MnlI CCTC 3 cut(s) 82, 458, 493
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 2 cut(s) 200, 689
MwoI GCNNNNNNNGC 4 cut(s) 176, 248, 703, 749
NdeII GATC 1 cut(s) 434
NlaIII CATG 2 cut(s) 701, 778
NlaIV GGNNCC 1 cut(s) 93
PceI AGGCCT 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 2 cut(s) 5, 634
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 3 cut(s) 133, 629, 708
PsiI TTATAA 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 445
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 200, 689
SatI GCNGC 3 cut(s) 132, 628, 707
Sau3AI GATC 1 cut(s) 434
Sau96I GGNCC 1 cut(s) 445
ScaI AGTACT 1 cut(s) 55
SduI GDGCHC 1 cut(s) 70
SetI ASST 8 cut(s) 15, 139, 592, 613, 632, 745, 814, 827
SfaNI GCATC 5 cut(s) 96, 132, 280, 355, 693
SfcI CTRYAG 2 cut(s) 132, 384
Sse9I AATT 9 cut(s) 78, 97, 246, 253, 372, 463, 560, 603, 642
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 2 cut(s) 312, 815
SspMI CTAG 1 cut(s) 282
StuI AGGCCT 1 cut(s) 654
StyI CCWWGG 2 cut(s) 430, 711
TasI AATT 9 cut(s) 78, 97, 246, 253, 372, 463, 560, 603, 642
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 5, 634
Tru1I TTAA 2 cut(s) 200, 689
Tru9I TTAA 2 cut(s) 200, 689
TscAI CASTG 2 cut(s) 373, 429
TseI GCWGC 3 cut(s) 131, 627, 706
TspDTI ATGAA 4 cut(s) 247, 333, 455, 763
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 373, 429
Van91I CCANNNNNTGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.