Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008630

Physical Location & Seq

Genomic Coordinates Forward (+)

1594593 .. 1601116

Gene Structure 6524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAGTGCAAATAGTAACATTCTGACAAAAAAGAACAATGCATGTTCAAATCCGTCTCATTTGTCTCAGTGTATAAACTACCAAAGTAGAGAAAGAAACTCAATTGTTCTGTTCTATTCTCTCCTCTCTACGAAACGTCTCTTTCCTCCACTACACAAAATTGAAAATTCCCTCTCCCCTCCTCTCTCTCTCCTCTCTCTATATAAACCATTTCAGCTCCAGTGTTTTTCATTTTACGCTCAATTCAGTCATAATTCCGTCAAACTCTTTTCAACCCAAAATTCTTGGAGCTTTTTTGGTCAAAGCTCCTCCATGGGATATCAGGTTTTGGTGGCTCTCGCGCTGTCACTCGTGGGTGGACTCAGTACTTCATTCGGTGCACTTTTAGTAATTGTCAATGAGACTCCGAATTTGAAGATGCTCGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCACTCCTAGATTTGGCTCACAATGCTATCAACTCAATTGGTTTTTTAAAAGGCAATCTATGGTTTTTTGGAGGTGTCATATTCTTTGCTATCATTGCCAATTTTATTCCAGAACCAACTCTTGCTCCTGTTTCGAAGAAAGATGAAGGAGGCAAGGACACTTTGAAAAAGCATCGCCGACAAGTTTTATTCAGTGGGATAGTAACAGCAATAGGCATAAGTTTACACAACCTTCCAGAAGGAATGGCCGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGGTGTGAACTTGGCCTTGGCCATTGCCTTACACAACATCCCAGAGGGTGTTGCTGTTGCGCTTCCTGTTTATTTTGCAACACAGAGCAAATGGCAGGCATTCAAGTTGGCAACGCTTTCCGGTTTAGCTGAGCCTTTGGGTGTCGTAATTGTAGCCTATCTATTCCCAAGCAGCTTGAGTCCTGAAATTCTTGAAGGCCTGCTCGGATCAGTTGGTGGAGTGATGGCTTTTCTAACTCTCCATGAGATGCTGCCCTTGGCTTTTGATTATGCGGGGCAGAAGCTAGCCGTCAAGGCCGTGTTTTTGGGAATGGCCTTCATGTCTGCAAGCCTTTACTTTCTTGAAATCAGCCTACCACAGGAGATGAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

374

Amino Acids

40.35

Weight (kDa)

9.25

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20870 AT3G20870 AT3G20870
fragaria_vesca	FvH4_3g43050 FvH4_3g43050 FvH4_3g43050
malus_domestica	MD03G1024300.v1.1 MD11G1029400.v1.1
prunus_persica	Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1
pyrus_communis	pycom03g02110 pycom11g02290
rosa_chinensis	RchiOBHm_Chr5g0077111
rosa_laevigata	RLG00000036666
rosa_multiflora	Rmu_sc0009061.1_g000002
rosa_roxburghii	Rroxscaffold_1G00005000
rosa_rugosa	Rorug05G0451800
rosa_samantha	Rh5AG506000 Rh5BG527900 Rh5CG552200 Rh5DG540200
rosa_wichuraiana	Rw5G047050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	437
AccII	CGCG	1 cut(s)	341
AciI	CCGC	1 cut(s)	1019
AclWI	GGATC	2 cut(s)	733, 961
AcoI	YGGCCR	2 cut(s)	711, 765
AcsI	RAATTY	4 cut(s)	166, 280, 409, 933
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	478, 1105
AgsI	TTSAA	8 cut(s)	48, 164, 273, 415, 631, 850, 941, 1091
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	7 cut(s)	217, 291, 306, 875, 921, 1030, 1116
AluI	AGCT	7 cut(s)	217, 291, 306, 875, 921, 1030, 1116
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	4 cut(s)	60, 69, 143, 395
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	2 cut(s)	733, 961
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	7 cut(s)	711, 736, 759, 765, 943, 1041, 1059
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	3 cut(s)	443, 918, 997
ApoI	RAATTY	4 cut(s)	166, 280, 409, 933
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AspLEI	GCGC	2 cut(s)	343, 808
AspS9I	GGNCC	1 cut(s)	736
AsuII	TTCGAA	1 cut(s)	599
AsuNHI	GCTAGC	1 cut(s)	1030
AvaI	CYCGRG	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	767
BauI	CACGAG	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	3 cut(s)	430, 930, 984
BccI	CCATC	1 cut(s)	964
BceAI	ACGGC	3 cut(s)	698, 1019, 1028
BcoDI	GTCTC	4 cut(s)	60, 69, 143, 395
BfaI	CTAG	2 cut(s)	473, 1031
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	1040
BisI	GCNGC	3 cut(s)	444, 919, 998
BlpI	GCTNAGC	2 cut(s)	458, 876
BlsI	GCNGC	3 cut(s)	445, 920, 999
BmcAI	AGTACT	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	736
BmsI	GCATC	4 cut(s)	408, 444, 646, 984
BmtI	GCTAGC	1 cut(s)	1034
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	2 cut(s)	458, 876
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	943
BsaJI	CCNNGG	3 cut(s)	312, 762, 1002
BsaWI	WCCGGW	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 1105
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	558, 768
BseDI	CCNNGG	3 cut(s)	312, 762, 1002
BseGI	GGATG	1 cut(s)	783
BseLI	CCNNNNNNNGG	2 cut(s)	478, 1105
BseMI	GCAATG	2 cut(s)	558, 768
BseMII	CTCAG	3 cut(s)	80, 376, 867
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	4 cut(s)	113, 171, 182, 298
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	430, 930, 984
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	7 cut(s)	713, 738, 761, 767, 945, 1043, 1061
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	867
BslI	CCNNNNNNNGG	2 cut(s)	478, 1105
BsmAI	GTCTC	4 cut(s)	60, 69, 143, 395
BsmBI	CGTCTC	2 cut(s)	60, 143
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	7 cut(s)	713, 738, 761, 767, 945, 1043, 1061
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	725, 953
Bsp1720I	GCTNAGC	2 cut(s)	458, 876
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	1019
BspANI	GGCC	7 cut(s)	713, 738, 761, 767, 945, 1043, 1061
BspCNI	CTCAG	3 cut(s)	79, 375, 868
BspFNI	CGCG	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	437
BspOI	GCTAGC	1 cut(s)	1034
BspPI	GGATC	2 cut(s)	733, 961
BspT104I	TTCGAA	1 cut(s)	599
BsrDI	GCAATG	2 cut(s)	558, 768
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	312, 762, 1002
BssMI	GATC	2 cut(s)	725, 953
BssSI	CACGAG	1 cut(s)	350
BssT1I	CCWWGG	3 cut(s)	312, 762, 1002
Bst2BI	CACGAG	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	843, 947, 1032, 1075
BstDEI	CTNAG	4 cut(s)	66, 362, 458, 876
BstDSI	CCRYGG	1 cut(s)	312
BstENI	CCTNNNNNAGG	1 cut(s)	1103
BstF5I	GGATG	1 cut(s)	783
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	343, 808
BstKTI	GATC	2 cut(s)	728, 956
BstMAI	GTCTC	4 cut(s)	60, 69, 143, 395
BstMBI	GATC	2 cut(s)	725, 953
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 560, 1040
BstNSI	RCATGY	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	430, 930, 984
BsuRI	GGCC	7 cut(s)	713, 738, 761, 767, 945, 1043, 1061
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	74, 227, 664
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	4 cut(s)	843, 947, 1032, 1075
CfoI	GCGC	2 cut(s)	343, 808
Cfr13I	GGNCC	1 cut(s)	736
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	4 cut(s)	42, 313, 989, 1066
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	4 cut(s)	66, 362, 458, 876
DpnI	GATC	2 cut(s)	727, 955
DpnII	GATC	2 cut(s)	725, 953
DraI	TTTAAA	1 cut(s)	513
EaeI	YGGCCR	2 cut(s)	711, 765
Eco130I	CCWWGG	3 cut(s)	312, 762, 1002
Eco147I	AGGCCT	1 cut(s)	945
Eco32I	GATATC	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	1103
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRV	GATATC	1 cut(s)	320
EcoT14I	CCWWGG	3 cut(s)	312, 762, 1002
EcoT22I	ATGCAT	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	312, 762, 1002
Esp3I	CGTCTC	2 cut(s)	60, 143
FaeI	CATG	4 cut(s)	45, 316, 992, 1069
FatI	CATG	4 cut(s)	41, 312, 988, 1065
FauI	CCCGC	1 cut(s)	1012
Fnu4HI	GCNGC	3 cut(s)	444, 919, 998
FokI	GGATG	1 cut(s)	770
Fsp4HI	GCNGC	3 cut(s)	444, 919, 998
FspBI	CTAG	2 cut(s)	473, 1031
GlaI	GCGC	2 cut(s)	342, 807
GluI	GCNGC	3 cut(s)	444, 919, 998
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	7 cut(s)	713, 738, 761, 767, 945, 1043, 1061
HapII	CCGG	1 cut(s)	867
HhaI	GCGC	2 cut(s)	343, 808
Hin1II	CATG	4 cut(s)	45, 316, 992, 1069
Hin6I	GCGC	2 cut(s)	341, 806
HinP1I	GCGC	2 cut(s)	341, 806
HinfI	GANTC	3 cut(s)	360, 403, 925
HpaII	CCGG	1 cut(s)	867
Hpy166II	GTNNAC	4 cut(s)	359, 380, 689, 754
Hpy188I	TCNGA	4 cut(s)	24, 408, 453, 953
Hpy188III	TCNNGA	5 cut(s)	575, 701, 929, 938, 1088
Hpy8I	GTNNAC	4 cut(s)	359, 380, 689, 754
HpyAV	CCTTC	7 cut(s)	605, 698, 707, 727, 749, 935, 1072
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	6 cut(s)	8, 41, 380, 446, 824, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 560, 1040
HpyF3I	CTNAG	4 cut(s)	66, 362, 458, 876
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	45, 316, 992, 1069
HspAI	GCGC	2 cut(s)	341, 806
Kzo9I	GATC	2 cut(s)	725, 953
LmnI	GCTCC	4 cut(s)	222, 288, 311, 595
Lsp1109I	GCAGC	3 cut(s)	430, 930, 984
LweI	GCATC	4 cut(s)	408, 444, 646, 984
MaeI	CTAG	2 cut(s)	473, 1031
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	3 cut(s)	14, 345, 667
MalI	GATC	2 cut(s)	727, 955
MboI	GATC	2 cut(s)	725, 953
MboII	GAAGA	2 cut(s)	427, 613
MfeI	CAATTG	2 cut(s)	102, 501
MhlI	GDGCHC	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	767
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	3 cut(s)	354, 397, 934
Mox20I	TGGCCA	1 cut(s)	767
Mph1103I	ATGCAT	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	767
MspI	CCGG	1 cut(s)	867
MunI	CAATTG	2 cut(s)	102, 501
Mva1269I	GAATGC	1 cut(s)	845
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	488, 560, 1040
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	725, 953
NheI	GCTAGC	1 cut(s)	1030
NlaIII	CATG	4 cut(s)	45, 316, 992, 1069
NmuCI	GTSAC	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	945
PctI	GAATGC	1 cut(s)	845
PkrI	GCNGC	3 cut(s)	445, 920, 999
PleI	GAGTC	3 cut(s)	354, 397, 933
PpsI	GAGTC	3 cut(s)	354, 397, 933
PspPI	GGNCC	1 cut(s)	736
PstI	CTGCAG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	3 cut(s)	444, 919, 998
Sau3AI	GATC	2 cut(s)	725, 953
Sau96I	GGNCC	1 cut(s)	736
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	3 cut(s)	354, 397, 934
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	4 cut(s)	408, 444, 646, 984
SfcI	CTRYAG	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	922
SmoI	CTYRAG	1 cut(s)	922
SseBI	AGGCCT	1 cut(s)	945
SsiI	CCGC	1 cut(s)	1019
SspMI	CTAG	2 cut(s)	473, 1031
StuI	AGGCCT	1 cut(s)	945
StyI	CCWWGG	3 cut(s)	312, 762, 1002
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	599
TatI	WGTACW	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	3 cut(s)	74, 227, 664
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	3 cut(s)	443, 918, 997
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	5 cut(s)	219, 360, 624, 746, 1054
TspGWI	ACGGA	2 cut(s)	42, 247
TspRI	CASTG	3 cut(s)	74, 227, 664
VneI	GTGCAC	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	1103
XapI	RAATTY	4 cut(s)	166, 280, 409, 933
XceI	RCATGY	1 cut(s)	45
XspI	CTAG	2 cut(s)	473, 1031
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.