Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008630

Physical Location & Seq

Genomic Coordinates Forward (+)

2013082 .. 2018732

Gene Structure 5651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1024300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTTTCTCAGGTTTTGGTGGCTCTCGCGCTGTCACTCGTGGGTGGACTCAGTACTTCATTCGGTGCACTTTTAGTAATTGTCAATGAGACTCCGAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTTTGATGCTAAGCATATCATTCCTAGATTTGGCTCACAATGCTATCAACTCAATTGGTTTTTTAAAAGGCAATCTATGGTTTTTTGGAGGTGTCATATTCTTTGCTTTCATTGCCAATTTTATTCCAGAACCAACTCTTGCTCCTATTTCAAAGAAAGATGAAGGGGGCAAGGACACTTTGAAAAAGCAGCGCCGACAAGTTTTATTCAGTGGGATAGTAACAGCAATAGGCATAAGTTTACACAACCTTCCAGAAGGAATGGCCGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGGTGTGAACTTGGCCTTGGCCATTGCCTTACACAACATCCCAGAGGGTGTTGCTGTTGCGCTTCCTGTTTATTTTGCAACACAGAGCAAATGGCAGGCATTCAAGTTGGCAACGCTTTCCGGTTTAGCTGAGCCTTTGGGTGTCGTAATTGTAGCCTATCTATTCCCAAGCAGCTTGAGTCCTGAAATTCTTGAAGGCCTGCTCGGATCAGTTGGTGGAGTGATGGCTTTTCTAACTCTCCATGAGATGCTGCCCTTGGCGTTTGATTATGCGGGGCAAAAGCAAGCCATCAAGGCCGTGTTTTTGGGAATGGCCTTCATGTCTGCAAGCCTTTACTTTCTTGAAATCAGCCTACCACAGGACATGAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

270

Amino Acids

28.52

Weight (kDa)

6.91

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	105 - 254	3e-20	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20870 AT3G20870 AT3G20870
fragaria_vesca	FvH4_3g43050 FvH4_3g43050 FvH4_3g43050
malus_domestica	MD03G1024300.v1.1 MD11G1029400.v1.1
prunus_persica	Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1
pyrus_communis	pycom03g02110 pycom11g02290
rosa_chinensis	RchiOBHm_Chr5g0077111
rosa_laevigata	RLG00000036666
rosa_multiflora	Rmu_sc0009061.1_g000002
rosa_roxburghii	Rroxscaffold_1G00005000
rosa_rugosa	Rorug05G0451800
rosa_samantha	Rh5AG506000 Rh5BG527900 Rh5CG552200 Rh5DG540200
rosa_wichuraiana	Rw5G047050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	125
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	707
AclWI	GGATC	2 cut(s)	421, 649
AcoI	YGGCCR	2 cut(s)	399, 453
AcsI	RAATTY	2 cut(s)	97, 621
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	166, 793
AgsI	TTSAA	6 cut(s)	103, 288, 319, 538, 629, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	3 cut(s)	563, 609, 804
AluI	AGCT	3 cut(s)	563, 609, 804
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	421, 649
AoxI	GGCC	7 cut(s)	399, 424, 447, 453, 631, 729, 747
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	131, 325, 606, 685
ApoI	RAATTY	2 cut(s)	97, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspLEI	GCGC	3 cut(s)	31, 330, 496
AspS9I	GGNCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	455
BauI	CACGAG	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	118, 337, 618, 672
BccI	CCATC	2 cut(s)	652, 731
BceAI	ACGGC	2 cut(s)	386, 716
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	125
BglI	GCCNNNNNGGC	1 cut(s)	728
BisI	GCNGC	4 cut(s)	132, 326, 607, 686
BlpI	GCTNAGC	2 cut(s)	146, 564
BlsI	GCNGC	4 cut(s)	133, 327, 608, 687
BmcAI	AGTACT	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	424
BmsI	GCATC	3 cut(s)	96, 132, 672
Bpu1102I	GCTNAGC	2 cut(s)	146, 564
BpuEI	CTTGAG	1 cut(s)	631
BsaJI	CCNNGG	2 cut(s)	450, 690
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 793
Bse3DI	GCAATG	2 cut(s)	246, 456
BseDI	CCNNGG	2 cut(s)	450, 690
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	166, 793
BseMI	GCAATG	2 cut(s)	246, 456
BseMII	CTCAG	3 cut(s)	23, 64, 555
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	4 cut(s)	118, 337, 618, 672
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	7 cut(s)	401, 426, 449, 455, 633, 731, 749
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	166, 793
BsmAI	GTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	7 cut(s)	401, 426, 449, 455, 633, 731, 749
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	413, 641
Bsp1720I	GCTNAGC	2 cut(s)	146, 564
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	7 cut(s)	401, 426, 449, 455, 633, 731, 749
BspCNI	CTCAG	3 cut(s)	22, 63, 556
BspFNI	CGCG	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	421, 649
BsrDI	GCAATG	2 cut(s)	246, 456
BssECI	CCNNGG	2 cut(s)	450, 690
BssMI	GATC	2 cut(s)	413, 641
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	450, 690
Bst2BI	CACGAG	1 cut(s)	38
BstC8I	GCNNGC	4 cut(s)	531, 635, 720, 763
BstDEI	CTNAG	4 cut(s)	9, 50, 146, 564
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	3 cut(s)	31, 330, 496
BstKTI	GATC	2 cut(s)	416, 644
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	413, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 248, 728
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	4 cut(s)	118, 337, 618, 672
BsuRI	GGCC	7 cut(s)	401, 426, 449, 455, 633, 731, 749
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	4 cut(s)	531, 635, 720, 763
CfoI	GCGC	3 cut(s)	31, 330, 496
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	3 cut(s)	677, 754, 799
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	4 cut(s)	9, 50, 146, 564
DpnI	GATC	2 cut(s)	415, 643
DpnII	GATC	2 cut(s)	413, 641
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	2 cut(s)	399, 453
Eco130I	CCWWGG	2 cut(s)	450, 690
Eco147I	AGGCCT	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoO109I	RGGNCCY	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	450, 690
ErhI	CCWWGG	2 cut(s)	450, 690
FaeI	CATG	3 cut(s)	680, 757, 802
FaiI	YATR	8 cut(s)	152, 214, 233, 371, 678, 705, 755, 800
FatI	CATG	3 cut(s)	676, 753, 798
FauI	CCCGC	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	132, 326, 607, 686
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	132, 326, 607, 686
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	3 cut(s)	30, 329, 495
GluI	GCNGC	4 cut(s)	132, 326, 607, 686
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	7 cut(s)	401, 426, 449, 455, 633, 731, 749
HapII	CCGG	1 cut(s)	555
HhaI	GCGC	3 cut(s)	31, 330, 496
Hin1II	CATG	3 cut(s)	680, 757, 802
Hin6I	GCGC	3 cut(s)	29, 328, 494
HinP1I	GCGC	3 cut(s)	29, 328, 494
HinfI	GANTC	3 cut(s)	48, 91, 613
HpaII	CCGG	1 cut(s)	555
Hpy166II	GTNNAC	4 cut(s)	47, 68, 377, 442
Hpy188I	TCNGA	2 cut(s)	96, 641
Hpy188III	TCNNGA	5 cut(s)	263, 389, 617, 626, 776
Hpy8I	GTNNAC	4 cut(s)	47, 68, 377, 442
HpyAV	CCTTC	7 cut(s)	293, 386, 395, 415, 437, 623, 760
HpyCH4V	TGCA	4 cut(s)	68, 134, 512, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 248, 728
HpyF3I	CTNAG	4 cut(s)	9, 50, 146, 564
Hsp92II	CATG	3 cut(s)	680, 757, 802
HspAI	GCGC	3 cut(s)	29, 328, 494
Kzo9I	GATC	2 cut(s)	413, 641
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	4 cut(s)	118, 337, 618, 672
LweI	GCATC	3 cut(s)	96, 132, 672
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	33, 355
MalI	GATC	2 cut(s)	415, 643
MboI	GATC	2 cut(s)	413, 641
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	6 cut(s)	78, 97, 189, 253, 582, 621
MluNI	TGGCCA	1 cut(s)	455
MlyI	GAGTC	3 cut(s)	42, 85, 622
MnlI	CCTC	2 cut(s)	218, 472
Mox20I	TGGCCA	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	533
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	176, 248, 728
NdeII	GATC	2 cut(s)	413, 641
NlaIII	CATG	3 cut(s)	680, 757, 802
NmuCI	GTSAC	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	633
PctI	GAATGC	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	133, 327, 608, 687
PleI	GAGTC	3 cut(s)	42, 85, 621
PpsI	GAGTC	3 cut(s)	42, 85, 621
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	4 cut(s)	132, 326, 607, 686
Sau3AI	GATC	2 cut(s)	413, 641
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	3 cut(s)	42, 85, 622
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	15, 139, 229, 387, 565, 611, 806
SfaNI	GCATC	3 cut(s)	96, 132, 672
SfcI	CTRYAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	6 cut(s)	78, 97, 189, 253, 582, 621
SseBI	AGGCCT	1 cut(s)	633
SsiI	CCGC	1 cut(s)	707
SspMI	CTAG	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	633
StyI	CCWWGG	2 cut(s)	450, 690
TasI	AATT	6 cut(s)	78, 97, 189, 253, 582, 621
TatI	WGTACW	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	4 cut(s)	131, 325, 606, 685
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	5 cut(s)	48, 235, 312, 434, 742
TspRI	CASTG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	791
XapI	RAATTY	2 cut(s)	97, 621
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.