FvH4_3g43050

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008630
Physical Location & Seq
Reverse (-)
35967847 .. 35972787
4941 bp
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UTR
Exon/CDS
Intron
FvH4_3g43050.t3

Sequence Viewer

Length: 831 bp
ATGGATTCTCAGGTCTTGGTGGCTCTCGCACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGCTCTTTTCGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTAGATTTGGCTCACAATGCTATAAACTCAATTGGATTTTTAAAAGCCAACTTATGGTTTTTCGGTGGTGTCATATTCTTTGCCATAATCGCCAATTTTATACCTGAACCATCACTTGCTCCTAGTTCAGATGTGAAAAGTAAAAAGAAAGGCGGGGATGAAGGGGGAAAAGACACTCTGAAGAAGCATCGCCGTCAAGTTTTATACAGTGGTATTGTTACAGCAATAGGCATAAGTTTGCACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGCCTCCGTGTTGGTGTCAATTTGGCTTTGGCCATTGCCTTACACAATATCCCAGAGGGAGTTGCTGTTGCACTTCCTGTCTACTTTGCAACACAGAGCAAATGGCAGGCGTTCAAATTGGCGACACTTTCTGGTTTTGCTGAGCCTTTGGGTGTTATAATAGTAGCCTATCTATTCCCTAGCAGCTTGAATCCAGAAATTCTTGAAGGCCTTCTGGGAGCAGTTGGTGGAGTGATGGCTTTCCTAACTCTGCATGAGATGCTGCCCTTGGCATTTGATTATGCAGGGCAGAAGCAAGCTATCAAGGCTGTGTTTTTGGGAATGGCTTTCATGTCTGCAAGCCTATACTTCCTTGAAATCAGCTTACCTGCAGAAATGAGCTTGTAG

Protein Analysis

277

Amino Acids

29.2

Weight (kDa)

6.97

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 100 - 176 1.2e-11 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
Acc36I ACCTGC 2 cut(s) 125, 820
AccB7I CCANNNNNTGG 1 cut(s) 213
AccI GTMKAC 1 cut(s) 525
AciI CCGC 1 cut(s) 312
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 2 cut(s) 359, 432
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 2 cut(s) 166, 213
AgsI TTSAA 5 cut(s) 103, 559, 634, 650, 800
AluBI AGCT 4 cut(s) 630, 743, 807, 825
AluI AGCT 4 cut(s) 630, 743, 807, 825
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 442
AoxI GGCC 3 cut(s) 445, 474, 652
ApeKI GCWGC 3 cut(s) 131, 627, 706
ApoI RAATTY 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 118, 639, 693
BccI CCATC 2 cut(s) 277, 673
BceAI ACGGC 1 cut(s) 336
BfaI CTAG 3 cut(s) 161, 282, 624
BfmI CTRYAG 2 cut(s) 132, 813
BfuAI ACCTGC 2 cut(s) 125, 820
BisI GCNGC 3 cut(s) 132, 628, 707
BlpI GCTNAGC 2 cut(s) 146, 585
BlsI GCNGC 3 cut(s) 133, 629, 708
BmcAI AGTACT 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 4 cut(s) 96, 132, 355, 693
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu1102I GCTNAGC 2 cut(s) 146, 585
BsaJI CCNNGG 2 cut(s) 430, 711
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 213
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 430, 711
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 166, 213
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 23, 576
BseXI GCAGC 3 cut(s) 118, 639, 693
BshFI GGCC 3 cut(s) 447, 476, 654
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 166, 213
BsnI GGCC 3 cut(s) 447, 476, 654
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 434
Bsp1720I GCTNAGC 2 cut(s) 146, 585
BspACI CCGC 1 cut(s) 312
BspANI GGCC 3 cut(s) 447, 476, 654
BspCNI CTCAG 2 cut(s) 22, 577
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 2 cut(s) 136, 817
BspMI ACCTGC 2 cut(s) 125, 820
BspPI GGATC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 477
BssECI CCNNGG 2 cut(s) 430, 711
BssMI GATC 1 cut(s) 434
BssT1I CCWWGG 2 cut(s) 430, 711
Bst4CI ACNGT 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 552, 741, 784
BstDEI CTNAG 3 cut(s) 9, 146, 585
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 437
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 4 cut(s) 176, 248, 703, 749
BstSFI CTRYAG 2 cut(s) 132, 813
BstV1I GCAGC 3 cut(s) 118, 639, 693
BsuRI GGCC 3 cut(s) 447, 476, 654
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 373, 429
BveI ACCTGC 2 cut(s) 125, 820
Cac8I GCNNGC 3 cut(s) 552, 741, 784
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 698, 775
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 3 cut(s) 9, 146, 585
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
DraI TTTAAA 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 430, 711
Eco147I AGGCCT 1 cut(s) 654
Eco57I CTGAAG 2 cut(s) 359, 432
EcoO109I RGGNCCY 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 430, 711
ErhI CCWWGG 2 cut(s) 430, 711
FaeI CATG 2 cut(s) 701, 778
FatI CATG 2 cut(s) 697, 774
FauI CCCGC 1 cut(s) 305
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 132, 628, 707
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 132, 628, 707
FspBI CTAG 3 cut(s) 161, 282, 624
GluI GCNGC 3 cut(s) 132, 628, 707
HaeIII GGCC 3 cut(s) 447, 476, 654
Hin1II CATG 2 cut(s) 701, 778
HinfI GANTC 2 cut(s) 5, 634
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 3 cut(s) 141, 289, 339
Hpy188III TCNNGA 3 cut(s) 410, 638, 647
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 5 cut(s) 314, 407, 436, 644, 665
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 8 cut(s) 134, 400, 515, 533, 697, 728, 782, 815
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 248, 703, 749
HpyF3I CTNAG 3 cut(s) 9, 146, 585
Hsp92II CATG 2 cut(s) 701, 778
Kzo9I GATC 1 cut(s) 434
LmnI GCTCC 3 cut(s) 97, 283, 662
Lsp1109I GCAGC 3 cut(s) 118, 639, 693
LweI GCATC 4 cut(s) 96, 132, 355, 693
MaeI CTAG 3 cut(s) 161, 282, 624
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 436
MboI GATC 1 cut(s) 434
MboII GAAGA 2 cut(s) 115, 352
MfeI CAATTG 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 7 cut(s) 78, 97, 189, 253, 463, 560, 642
MluNI TGGCCA 1 cut(s) 476
MnlI CCTC 3 cut(s) 82, 458, 493
Mox20I TGGCCA 1 cut(s) 476
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 1 cut(s) 476
MseI TTAA 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 476
MunI CAATTG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 176, 248, 703, 749
NdeII GATC 1 cut(s) 434
NlaIII CATG 2 cut(s) 701, 778
NlaIV GGNNCC 1 cut(s) 93
PceI AGGCCT 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 2 cut(s) 5, 634
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 3 cut(s) 133, 629, 708
PsiI TTATAA 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 445
PstI CTGCAG 2 cut(s) 136, 817
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 132, 628, 707
Sau3AI GATC 1 cut(s) 434
Sau96I GGNCC 1 cut(s) 445
ScaI AGTACT 1 cut(s) 55
SduI GDGCHC 1 cut(s) 70
SetI ASST 8 cut(s) 15, 139, 265, 632, 745, 809, 814, 827
SfaNI GCATC 4 cut(s) 96, 132, 355, 693
SfcI CTRYAG 2 cut(s) 132, 813
Sse9I AATT 7 cut(s) 78, 97, 189, 253, 463, 560, 642
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 1 cut(s) 312
SspMI CTAG 3 cut(s) 161, 282, 624
StuI AGGCCT 1 cut(s) 654
StyI CCWWGG 2 cut(s) 430, 711
TaaI ACNGT 1 cut(s) 368
TasI AATT 7 cut(s) 78, 97, 189, 253, 463, 560, 642
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 5, 634
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 373, 429
TseI GCWGC 3 cut(s) 131, 627, 706
TspDTI ATGAA 3 cut(s) 333, 455, 763
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 373, 429
Van91I CCANNNNNTGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 3 cut(s) 161, 282, 624
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.