Rh5CG552200

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008630
Physical Location & Seq
Reverse (-)
76878520 .. 76884159
5640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG552200.1

Sequence Viewer

Length: 543 bp
ATGGATTCTCAGGTCTTGGTGGCTCTCGCACTCTCACTTGTGGGTGGATTGAGTACTTCTCTGGGTGCTCTTTTCGTAATTCTCAATGAGGCTCCCAATTTGAAGATGCTTGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCATTCCTTGATTTGGCTCACAATGCTATAAACTCAATAGGATTTTTAAAAGCCAACATATGGTTTTTTGCTGGTGTGTTATTCTTTGCCGTAATTGCCAATTTTATTCCGGAACCATCACTTGCTCCTAGTTCAGATGTGAAAAGTAAAAAGAAAGGCGGGGATGAAGGGGGAAAAGACACTTTGAAGAAGCATCGCCGTCAAGTATTATTCAGTGGAATTGTTACAGCAATAGGCATAAGTTTGCACAACTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCAATGAAGGGACTCCGTGTAGGTGTCAATTTGGCTTTGGCTATTGCCTTACACAATATCCCAGAGGTATATTCTCTAAATAGTTGTGATAAAAATTGTAGGCTTTAA

Protein Analysis

180

Amino Acids

19.07

Weight (kDa)

9.23

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 99 - 173 4.4e-10 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 213
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 1 cut(s) 312
AclWI GGATC 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 2 cut(s) 166, 213
AgsI TTSAA 2 cut(s) 103, 340
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 442
Aor13HI TCCGGA 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 227, 336
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 93, 267
BmsI GCATC 3 cut(s) 96, 132, 355
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bpu1102I GCTNAGC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 213
BseAI TCCGGA 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 166, 213
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 2 cut(s) 166, 213
BsmFI GGGAC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 434
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 93, 267
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 430
BstDEI CTNAG 2 cut(s) 9, 146
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 437
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 2 cut(s) 176, 248
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 373, 429
BveI ACCTGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 54
CviJI RGCY 8 cut(s) 23, 92, 115, 170, 206, 470, 476, 538
CviKI_1 RGCY 8 cut(s) 23, 92, 115, 170, 206, 470, 476, 538
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 9, 146
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
DraI TTTAAA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaiI YATR 6 cut(s) 152, 182, 212, 214, 392, 505
FaqI GGGAC 1 cut(s) 459
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 263
HinfI GANTC 2 cut(s) 5, 447
HpaII CCGG 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 141, 289
Hpy188III TCNNGA 2 cut(s) 263, 410
HpyAV CCTTC 3 cut(s) 314, 407, 436
HpyCH4V TGCA 2 cut(s) 134, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 248
HpyF3I CTNAG 2 cut(s) 9, 146
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 97, 283
LpnPI CCDG 7 cut(s) 47, 107, 120, 210, 276, 423, 510
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 3 cut(s) 96, 132, 355
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 436
MboI GATC 1 cut(s) 434
MboII GAAGA 2 cut(s) 115, 352
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 7 cut(s) 78, 97, 246, 253, 372, 463, 529
MlyI GAGTC 1 cut(s) 441
MnlI CCTC 2 cut(s) 82, 493
MroI TCCGGA 1 cut(s) 262
MseI TTAA 2 cut(s) 200, 541
MspI CCGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 176, 248
NdeI CATATG 1 cut(s) 212
NdeII GATC 1 cut(s) 434
NlaIV GGNNCC 2 cut(s) 93, 267
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 93, 267
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 200, 541
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 434
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 441
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 15, 139, 460, 504
SfaNI GCATC 3 cut(s) 96, 132, 355
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 7 cut(s) 78, 97, 246, 253, 372, 463, 529
SsiI CCGC 1 cut(s) 312
SspMI CTAG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 430
TasI AATT 7 cut(s) 78, 97, 246, 253, 372, 463, 529
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 200, 541
Tru9I TTAA 2 cut(s) 200, 541
TscAI CASTG 2 cut(s) 373, 429
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 333, 455
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 373, 429
Van91I CCANNNNNTGG 1 cut(s) 213
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.