Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008630

Physical Location & Seq

Genomic Coordinates Forward (+)

1895456 .. 1901038

Gene Structure 5583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGATTCACAGGTCTTGATGGCTCTGGCTCTCTCACTTGTGGGTGGACTGAGTACTTCAATCGGTGCACTTTTTGTAGTTCTCAATGAGGCTCCCAATTTGAAGATACTTGGGCTTTTACAGGGTTTTGCTGCAGGTTTGATGCTAAGCATATCATTCCTAGATTTGGCTCACAATGCTATAAATTCTATTGGCTTTTTAAAAGGCAACCTATGGTTTTTTGGCGGTGTCATATTCTTTGGTATCATTGCCAATTTTATTCCAGAACCAACACTTGCTCCTAGTTCAGATGTGAGAGGTAAAAAGAAAAGTGGGGATGAAGGGGGCAAGGACACTTTGAAGAAGCATCGCCGCCAAGTTCTATACAGTGGGATAATTACAGCAATAGGCATAAGTTTACACAACTTTCCAGAAGGAATGGCCGTGTTCCTTGGATCAATGAAGGGCCTTCGTGTTGGTGTCAACTTGGCCTTGGCCATTGCCTTACACAACATTCCAGAGGGCGTCGCTGTTGCACTTCCTGTTTACTTCGCAACACAGAGCAAATGGCAGGCATTCAAATTGGCAACACTTTCTGGTTTTGCTGAGCCTTTGGGTGTCATAATTGTAGCCTATCTATTTCCAAGCAGCTTGAGTCCTGATATTCTTGAAGGCTTGCTGGGAGCAGTTGGTGGAGTAATGGCTTTTCTAACCCTGCATGAGATGCTTCCCTTGGCGTTTGATTATGCGGGGCAGAAGCAAGCTGTCAAGGCCGTATTTTTGGGAATGGCCTTCATGTCTGCAAGCCTCTACTTTCTCGAAATCAGCCTACCTCAGGAGATGAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

277

Amino Acids

29.23

Weight (kDa)

6.97

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20870 AT3G20870 AT3G20870
fragaria_vesca	FvH4_3g43050 FvH4_3g43050 FvH4_3g43050
malus_domestica	MD03G1024300.v1.1 MD11G1029400.v1.1
prunus_persica	Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1 Prupe.6G023700_v2.0.a1
pyrus_communis	pycom03g02110 pycom11g02290
rosa_chinensis	RchiOBHm_Chr5g0077111
rosa_laevigata	RLG00000036666
rosa_multiflora	Rmu_sc0009061.1_g000002
rosa_roxburghii	Rroxscaffold_1G00005000
rosa_rugosa	Rorug05G0451800
rosa_samantha	Rh5AG506000 Rh5BG527900 Rh5CG552200 Rh5DG540200
rosa_wichuraiana	Rw5G047050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	125
AciI	CCGC	3 cut(s)	225, 352, 728
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	2 cut(s)	420, 474
AcsI	RAATTY	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	166, 814
AgsI	TTSAA	5 cut(s)	60, 103, 340, 559, 650
AluBI	AGCT	3 cut(s)	630, 743, 825
AluI	AGCT	3 cut(s)	630, 743, 825
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	6 cut(s)	420, 445, 468, 474, 750, 768
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	131, 627
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	813
BaeGI	GKGCMC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	118, 639
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	407, 737
BfaI	CTAG	2 cut(s)	161, 282
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	132, 352, 628
BlpI	GCTNAGC	2 cut(s)	146, 585
BlsI	GCNGC	3 cut(s)	133, 353, 629
BmcAI	AGTACT	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	3 cut(s)	132, 355, 693
Bpu1102I	GCTNAGC	2 cut(s)	146, 585
BpuEI	CTTGAG	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	430, 471, 711
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 814
Bse21I	CCTNAGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	246, 477
BseDI	CCNNGG	3 cut(s)	430, 471, 711
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	166, 814
BseMI	GCAATG	2 cut(s)	246, 477
BseMII	CTCAG	3 cut(s)	41, 576, 827
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	118, 639
BseYI	CCCAGC	1 cut(s)	658
BshFI	GGCC	6 cut(s)	422, 447, 470, 476, 752, 770
BsiHKAI	GWGCWC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	166, 814
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	6 cut(s)	422, 447, 470, 476, 752, 770
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	434
Bsp1720I	GCTNAGC	2 cut(s)	146, 585
BspACI	CCGC	3 cut(s)	225, 352, 728
BspANI	GGCC	6 cut(s)	422, 447, 470, 476, 752, 770
BspCNI	CTCAG	3 cut(s)	42, 577, 826
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	442
BsrDI	GCAATG	2 cut(s)	246, 477
BssECI	CCNNGG	3 cut(s)	430, 471, 711
BssMI	GATC	1 cut(s)	434
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	3 cut(s)	430, 471, 711
Bst4CI	ACNGT	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	504
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstC8I	GCNNGC	4 cut(s)	552, 656, 741, 784
BstDEI	CTNAG	4 cut(s)	50, 146, 585, 813
BstENI	CCTNNNNNAGG	1 cut(s)	812
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	437
BstMBI	GATC	1 cut(s)	434
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 703, 749
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	118, 639
Bsu36I	CCTNAGG	1 cut(s)	813
BsuRI	GGCC	6 cut(s)	422, 447, 470, 476, 752, 770
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	4 cut(s)	552, 656, 741, 784
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	2 cut(s)	698, 775
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	4 cut(s)	50, 146, 585, 813
DpnI	GATC	1 cut(s)	436
DpnII	GATC	1 cut(s)	434
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	2 cut(s)	420, 474
Eco130I	CCWWGG	3 cut(s)	430, 471, 711
Eco81I	CCTNAGG	1 cut(s)	813
EcoNI	CCTNNNNNAGG	1 cut(s)	812
EcoO109I	RGGNCCY	1 cut(s)	445
EcoT14I	CCWWGG	3 cut(s)	430, 471, 711
ErhI	CCWWGG	3 cut(s)	430, 471, 711
FaeI	CATG	2 cut(s)	701, 778
FatI	CATG	2 cut(s)	697, 774
FauI	CCCGC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	132, 352, 628
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	132, 352, 628
FspBI	CTAG	2 cut(s)	161, 282
GluI	GCNGC	3 cut(s)	132, 352, 628
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	6 cut(s)	422, 447, 470, 476, 752, 770
HgaI	GACGC	1 cut(s)	493
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	701, 778
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	5, 634
Hpy166II	GTNNAC	5 cut(s)	47, 68, 398, 463, 526
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	8 cut(s)	16, 263, 410, 497, 638, 647, 797, 815
Hpy8I	GTNNAC	5 cut(s)	47, 68, 398, 463, 526
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	6 cut(s)	314, 407, 436, 458, 644, 781
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	5 cut(s)	68, 134, 515, 697, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 703, 749
HpyF3I	CTNAG	4 cut(s)	50, 146, 585, 813
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	701, 778
Kzo9I	GATC	1 cut(s)	434
LmnI	GCTCC	3 cut(s)	97, 283, 662
Lsp1109I	GCAGC	2 cut(s)	118, 639
LweI	GCATC	3 cut(s)	132, 355, 693
MaeI	CTAG	2 cut(s)	161, 282
MalI	GATC	1 cut(s)	436
MboI	GATC	1 cut(s)	434
MboII	GAAGA	2 cut(s)	115, 352
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	6 cut(s)	97, 184, 253, 375, 560, 603
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	643
MnlI	CCTC	5 cut(s)	82, 290, 493, 797, 822
Mox20I	TGGCCA	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	176, 703, 749
NdeII	GATC	1 cut(s)	434
NlaIII	CATG	2 cut(s)	701, 778
NlaIV	GGNNCC	1 cut(s)	93
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	133, 353, 629
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	132, 352, 628
Sau3AI	GATC	1 cut(s)	434
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	643
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	15, 139, 213, 301, 632, 745, 814, 827
SfaNI	GCATC	3 cut(s)	132, 355, 693
SfcI	CTRYAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	6 cut(s)	97, 184, 253, 375, 560, 603
SsiI	CCGC	3 cut(s)	225, 352, 728
SspMI	CTAG	2 cut(s)	161, 282
StyI	CCWWGG	3 cut(s)	430, 471, 711
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	798
TasI	AATT	6 cut(s)	97, 184, 253, 375, 560, 603
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	2 cut(s)	131, 627
TspDTI	ATGAA	3 cut(s)	333, 455, 763
TspRI	CASTG	1 cut(s)	373
VneI	GTGCAC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	812
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	2 cut(s)	161, 282
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.