Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Forward (+)

7326355 .. 7328581

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGAATTGAAGACATGCATTCAAAATCTGACAGTGGTGGGAACAAGGTTGATTCAGAGGTTCATGGTACAGTATCGTCGTCGATAAATAGTTTAAACCCTTGGCATCGTGCTGCTGCTGCTTGCAATGCAAATTCTAGTGTGGAAGCTGGAGATAAATCTTCTAAGTCAATAGCATTAGCATTGGAATCAAACGGTTCCAAATCACCATCCAATAGAGATAATACTGTTAACAAGGAATCACAAGTCACAACGTCTCCACAATCAGCTGGAGATTATAGTGATAAAAACCAAGAATCTCTGCATCATGGCATCACACAACCTCCTCCTCACCCTCAACTTGTTGGCCACACAGTTGGATGGGCATCCTCAAATCCATACCAGGATCCATATTATGCAGGAGTGATGGGAGCCTATGGACATCATCCCCTGGGGTTTGTTCCATATGGTGGGATGCCTCATTCAAGAATGCCACTGCCGCCTGAGATGGCACAAGAACCAGTTTTCGTGAATGCTAAACAGTACCAGGCGATTCTGAGGCGAAGGCAGGCACGCGCCAAGGCAGAGCTAGAGAAGAAGCTAATAAAATCCAGAAAGCCTTATCTACATGAATCTCGGCATCAACATGCTATGAGGAGGCCAAGGGGTACTGGAGGACGGTTTGCAAAGAAAACCAACACCGAAGCTTCAAAGCGTAAAGCTGAAGAAAAGAGCAATGGTCATGTTACTCAGTCCCCGTCATCATCTAATTCTGATCAAGGTGAAGCTTGGAATGGTGACTATAGAACACCTCAGGGAGATGAGATGCAGAGCTCAGCTTATAAGAGAAGGGAAGAAGGAGAGTGTTCAGGGCAGCAATGGAACAGCCTTTCCTCAAACCATCCTTCTCAAGCTCGTCTAGCCATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

303

Amino Acids

33.15

Weight (kDa)

9.36

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	166 - 221	1.4e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccII	CGCG	1 cut(s)	555
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	2 cut(s)	380, 393
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	3 cut(s)	70, 524, 649
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	4 cut(s)	11, 24, 465, 690
AjnI	CCWGG	3 cut(s)	381, 429, 525
AloI	GAACNNNNNNTCC	2 cut(s)	854, 886
Alw21I	GWGCWC	1 cut(s)	815
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	380, 393
AoxI	GGCC	2 cut(s)	346, 638
ApeKI	GCWGC	4 cut(s)	113, 116, 119, 853
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	557
AsuHPI	GGTGA	4 cut(s)	198, 323, 773, 788
AxyI	CCTNAGG	1 cut(s)	792
BalI	TGGCCA	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	815
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	815
BbvI	GCAGC	4 cut(s)	100, 103, 106, 865
BccI	CCATC	5 cut(s)	217, 354, 400, 481, 888
BciT130I	CCWGG	3 cut(s)	383, 431, 527
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	3 cut(s)	138, 569, 899
BfmI	CTRYAG	1 cut(s)	781
BisI	GCNGC	5 cut(s)	114, 117, 120, 479, 854
BlpI	GCTNAGC	1 cut(s)	814
BlsI	GCNGC	5 cut(s)	115, 118, 121, 480, 855
Bme1390I	CCNGG	3 cut(s)	383, 431, 527
BmiI	GGNNCC	3 cut(s)	199, 387, 412
BmrFI	CCNGG	3 cut(s)	383, 431, 527
BmsI	GCATC	7 cut(s)	115, 313, 321, 374, 444, 628, 795
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	3 cut(s)	171, 291, 672
Bpu1102I	GCTNAGC	1 cut(s)	814
BpuEI	CTTGAG	1 cut(s)	873
BsaBI	GATNNNNATC	1 cut(s)	364
BsaJI	CCNNGG	5 cut(s)	101, 429, 430, 558, 641
BsaXI	ACNNNNNCTCC	4 cut(s)	241, 271, 307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	500, 655
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	3 cut(s)	133, 721, 863
Bse8I	GATNNNNATC	1 cut(s)	364
BseBI	CCWGG	3 cut(s)	383, 431, 527
BseDI	CCNNGG	5 cut(s)	101, 429, 430, 558, 641
BseGI	GGATG	6 cut(s)	209, 365, 365, 424, 459, 880
BseJI	GATNNNNATC	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	3 cut(s)	133, 721, 863
BseMII	CTCAG	5 cut(s)	474, 527, 743, 806, 828
BseNI	ACTGG	2 cut(s)	500, 655
BseRI	GAGGAG	3 cut(s)	315, 318, 649
BseXI	GCAGC	4 cut(s)	100, 103, 106, 865
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	348, 640
BsiHKAI	GWGCWC	1 cut(s)	815
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	718
BsmI	GAATGC	3 cut(s)	19, 474, 517
BsnI	GGCC	2 cut(s)	348, 640
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp143I	GATC	2 cut(s)	385, 754
Bsp1720I	GCTNAGC	1 cut(s)	814
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	2 cut(s)	348, 640
BspCNI	CTCAG	5 cut(s)	475, 528, 742, 805, 827
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	199, 387, 412
BspPI	GGATC	2 cut(s)	380, 393
BsrDI	GCAATG	3 cut(s)	133, 721, 863
BsrI	ACTGG	2 cut(s)	500, 655
BssECI	CCNNGG	5 cut(s)	101, 429, 430, 558, 641
BssMI	GATC	2 cut(s)	385, 754
BssT1I	CCWWGG	3 cut(s)	101, 558, 641
Bst2UI	CCWGG	3 cut(s)	383, 431, 527
Bst4CI	ACNGT	7 cut(s)	35, 73, 197, 229, 355, 522, 660
BstC8I	GCNNGC	3 cut(s)	124, 549, 553
BstDEI	CTNAG	6 cut(s)	165, 483, 536, 729, 792, 814
BstF5I	GGATG	6 cut(s)	209, 365, 365, 424, 459, 880
BstFNI	CGCG	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	388, 757
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	385, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 478, 899
BstNI	CCWGG	3 cut(s)	383, 431, 527
BstNSI	RCATGY	2 cut(s)	19, 629
BstSCI	CCNGG	3 cut(s)	381, 429, 525
BstSFI	CTRYAG	1 cut(s)	781
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	100, 103, 106, 865
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	385
Bsu36I	CCTNAGG	1 cut(s)	792
BsuRI	GGCC	2 cut(s)	348, 640
BtsCI	GGATG	6 cut(s)	209, 365, 365, 424, 459, 880
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	40, 473
Cac8I	GCNNGC	3 cut(s)	124, 549, 553
CfoI	GCGC	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	69, 523, 648
CviAII	CATG	6 cut(s)	16, 65, 308, 608, 626, 722
CviQI	GTAC	3 cut(s)	69, 523, 648
DdeI	CTNAG	6 cut(s)	165, 483, 536, 729, 792, 814
DpnI	GATC	2 cut(s)	387, 756
DpnII	GATC	2 cut(s)	385, 754
DraI	TTTAAA	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	813
Eco130I	CCWWGG	3 cut(s)	101, 558, 641
Eco24I	GRGCYC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	723
Eco81I	CCTNAGG	1 cut(s)	792
EcoICRI	GAGCTC	1 cut(s)	813
EcoRII	CCWGG	3 cut(s)	381, 429, 525
EcoT14I	CCWWGG	3 cut(s)	101, 558, 641
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	815
ErhI	CCWWGG	3 cut(s)	101, 558, 641
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	6 cut(s)	19, 68, 311, 611, 629, 725
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	6 cut(s)	15, 64, 307, 607, 625, 721
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	5 cut(s)	114, 117, 120, 479, 854
FokI	GGATG	6 cut(s)	196, 352, 372, 411, 466, 867
FriOI	GRGCYC	1 cut(s)	815
Fsp4HI	GCNGC	5 cut(s)	114, 117, 120, 479, 854
FspBI	CTAG	3 cut(s)	138, 569, 899
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	5 cut(s)	114, 117, 120, 479, 854
GsuI	CTGGAG	3 cut(s)	171, 291, 672
HaeIII	GGCC	2 cut(s)	348, 640
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	6 cut(s)	19, 68, 311, 611, 629, 725
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	684, 765
HinfI	GANTC	6 cut(s)	53, 188, 239, 296, 532, 611
HpaI	GTTAAC	1 cut(s)	232
HphI	GGTGA	4 cut(s)	198, 323, 773, 788
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	31, 58, 537, 754
Hpy188III	TCNNGA	3 cut(s)	465, 508, 591
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	2 cut(s)	82, 85
HpyAV	CCTTC	4 cut(s)	537, 822, 830, 894
HpyCH4III	ACNGT	7 cut(s)	35, 73, 197, 229, 355, 522, 660
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	7 cut(s)	19, 126, 131, 304, 398, 665, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 478, 899
HpyF3I	CTNAG	6 cut(s)	165, 483, 536, 729, 792, 814
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	6 cut(s)	19, 68, 311, 611, 629, 725
HspAI	GCGC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	754
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	385, 754
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	4 cut(s)	100, 103, 106, 865
LweI	GCATC	7 cut(s)	115, 313, 321, 374, 444, 628, 795
MaeI	CTAG	3 cut(s)	138, 569, 899
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	3 cut(s)	247, 724, 776
MalI	GATC	2 cut(s)	387, 756
MboI	GATC	2 cut(s)	385, 754
MboII	GAAGA	5 cut(s)	23, 153, 586, 716, 845
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	815
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	3 cut(s)	6, 133, 748
MluNI	TGGCCA	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	337
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	3 cut(s)	95, 231, 906
MslI	CAYNNNNRTG	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	269
MspR9I	CCNGG	3 cut(s)	383, 431, 527
MssI	GTTTAAAC	1 cut(s)	96
Mva1269I	GAATGC	3 cut(s)	19, 474, 517
MvaI	CCWGG	3 cut(s)	383, 431, 527
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 478, 899
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	2 cut(s)	385, 754
NlaIII	CATG	6 cut(s)	19, 68, 311, 611, 629, 725
NlaIV	GGNNCC	3 cut(s)	199, 387, 412
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	2 cut(s)	247, 776
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	19, 629
PasI	CCCWGGG	1 cut(s)	430
PctI	GAATGC	3 cut(s)	19, 474, 517
PfeI	GAWTC	6 cut(s)	53, 188, 239, 296, 532, 611
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	5 cut(s)	115, 118, 121, 480, 855
PmeI	GTTTAAAC	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	822
Psp124BI	GAGCTC	1 cut(s)	815
Psp6I	CCWGG	3 cut(s)	381, 429, 525
PspGI	CCWGG	3 cut(s)	381, 429, 525
PspN4I	GGNNCC	3 cut(s)	199, 387, 412
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	3 cut(s)	70, 524, 649
RsaNI	GTAC	3 cut(s)	69, 523, 648
RseI	CAYNNNNRTG	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	95, 231, 906
SatI	GCNGC	5 cut(s)	114, 117, 120, 479, 854
Sau3AI	GATC	2 cut(s)	385, 754
ScrFI	CCNGG	3 cut(s)	383, 431, 527
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	7 cut(s)	115, 313, 321, 374, 444, 628, 795
SfcI	CTRYAG	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	888
SmoI	CTYRAG	1 cut(s)	888
Sse9I	AATT	3 cut(s)	6, 133, 748
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	3 cut(s)	138, 569, 899
SstI	GAGCTC	1 cut(s)	815
StyD4I	CCNGG	3 cut(s)	381, 429, 525
StyI	CCWWGG	3 cut(s)	101, 558, 641
TaaI	ACNGT	7 cut(s)	35, 73, 197, 229, 355, 522, 660
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	6, 133, 748
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	6 cut(s)	53, 188, 239, 296, 532, 611
Tru1I	TTAA	3 cut(s)	95, 231, 906
Tru9I	TTAA	3 cut(s)	95, 231, 906
TscAI	CASTG	2 cut(s)	40, 480
TseFI	GTSAC	2 cut(s)	247, 776
TseI	GCWGC	4 cut(s)	113, 116, 119, 853
Tsp45I	GTSAC	2 cut(s)	247, 776
TspDTI	ATGAA	2 cut(s)	53, 624
TspRI	CASTG	2 cut(s)	40, 480
Van91I	CCANNNNNTGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	2 cut(s)	19, 629
XspI	CTAG	3 cut(s)	138, 569, 899
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.