Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

55446608 .. 55451120

Gene Structure 4513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGCATGCAGCCAAAGTCTGATACTGAAAACCGAATACCTGCTGATCGTCATACCATTCCACCATCCACTGTTTCTTCAGAACCTTGGTGGCGTACTGTTGGGTATAACCCCACCTCCCCAGCCGCGGCAGGGATAAATGCATCCAATTCATCTTCTTTTGAACGCCCAAAGAGTCGTTCAGAATCCAGTGATGACAAATCTGTTTCTGATGATGGATCAAATGAGGATGATGATAATGCCACCAAAAAGTCACAAATGACATCTCCTCAGTCAGTTGGAAATAAAAACCAGGATTTGCAGCTTGTTTCGTCCACTGTTCCTACAGTGCATGATGAAGGCGTTGCTCAGCCACCACAGCTTGAACTTATTGGTCACTCTATTGCTTGTTCCTCAAATCCTTACCAGGATCCATATTATGCAGGAATGATGGCGGCTTATGGACATCAGCCTTTGGGTTATCCTCCTTTTGTTGGAGTGCCACATGCTAGAATGCCTTTGCCTCTTGAGATGGCACAGGAGCCTGTATATGTCAATGCAAAACAATACCAAGGGATTCTACGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAAGAAGCTAATTAAAGTCAGAAAGCCATATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCAAGAGGTACTGGAGGACGTTTTGCAAGGAAAACAAATGGTGATACTTCAAAGACCACTGGCCAAGAAAAGGCATCTAGTTCTGGTCCAGCCCATTCATCACAGTCTGCCAGTTCATCAGGCTCAGAACCCTTACCCTCAGATTCTGCAGAAACATGGAATTCTTCCACTAGTCAACTGGAAGCTAGTCGACCCGTACATGATGCATATGCCACTAACAATTATGTAAATGGTAGTGGCTGCTACCAGACTCATGGTGGCTTGCAGGCTTCATTGTATCGTTCGTACTCGGGAAAAAGAGGGGACGAAGGAGACTGTACAGGCCAGGAACGGGGAAGTATGTCTTCAAATCAGGGTTCACAGAGGCGTCTTGCCATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

348

Amino Acids

37.72

Weight (kDa)

8.81

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	174 - 229	3.9e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	853
AccII	CGCG	1 cut(s)	128
AciI	CCGC	3 cut(s)	126, 128, 434
AclWI	GGATC	3 cut(s)	226, 404, 417
AcoI	YGGCCR	1 cut(s)	724
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	1 cut(s)	63
AcvI	CACGTG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	1030
AfaI	GTAC	5 cut(s)	97, 673, 861, 950, 982
AfiI	CCNNNNNNNGG	5 cut(s)	127, 132, 473, 733, 994
AgsI	TTSAA	5 cut(s)	164, 365, 596, 714, 1011
AhlI	ACTAGT	1 cut(s)	833
AjnI	CCWGG	3 cut(s)	291, 405, 987
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	4 cut(s)	304, 361, 604, 848
AluI	AGCT	4 cut(s)	304, 361, 604, 848
Alw26I	GTCTC	1 cut(s)	969
AlwI	GGATC	3 cut(s)	226, 404, 417
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	2 cut(s)	724, 985
ApeKI	GCWGC	3 cut(s)	10, 301, 903
ApoI	RAATTY	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	952
AvaII	GGWCC	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	726
BamHI	GGATCC	1 cut(s)	409
BbrPI	CACGTG	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	574, 999
BbvI	GCAGC	3 cut(s)	22, 313, 890
BccI	CCATC	5 cut(s)	73, 209, 424, 505, 1046
BceAI	ACGGC	1 cut(s)	578
BciT130I	CCWGG	3 cut(s)	293, 407, 989
BcoDI	GTCTC	1 cut(s)	969
BcuI	ACTAGT	1 cut(s)	833
BfaI	CTAG	4 cut(s)	489, 741, 834, 849
BfmI	CTRYAG	2 cut(s)	324, 810
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	6 cut(s)	11, 126, 129, 302, 435, 904
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	6 cut(s)	12, 127, 130, 303, 436, 905
Bme1390I	CCNGG	3 cut(s)	293, 407, 989
Bme18I	GGWCC	1 cut(s)	749
BmeT110I	CYCGRG	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	2 cut(s)	411, 522
BmrFI	CCNGG	3 cut(s)	293, 407, 989
BmsI	GCATC	3 cut(s)	152, 746, 856
BpiI	GAAGAC	2 cut(s)	574, 999
BpmI	CTGGAG	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	578
BsaHI	GRCGYC	1 cut(s)	1030
BsaJI	CCNNGG	3 cut(s)	86, 126, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 132, 473, 733, 994
Bse1I	ACTGG	6 cut(s)	189, 679, 727, 774, 846, 1042
BseBI	CCWGG	3 cut(s)	293, 407, 989
BseDI	CCNNGG	3 cut(s)	86, 126, 550
BseGI	GGATG	4 cut(s)	65, 143, 235, 1038
BseLI	CCNNNNNNNGG	5 cut(s)	127, 132, 473, 733, 994
BseMII	CTCAG	4 cut(s)	284, 362, 801, 816
BseNI	ACTGG	6 cut(s)	189, 679, 727, 774, 846, 1042
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	22, 313, 890
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	726, 987
BsiHKCI	CYCGRG	1 cut(s)	952
BslFI	GGGAC	1 cut(s)	980
BslI	CCNNNNNNNGG	5 cut(s)	127, 132, 473, 733, 994
BsmAI	GTCTC	1 cut(s)	969
BsmFI	GGGAC	1 cut(s)	980
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	726, 987
BsoBI	CYCGRG	1 cut(s)	952
Bsp1407I	TGTACA	1 cut(s)	980
Bsp143I	GATC	3 cut(s)	46, 218, 409
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	3 cut(s)	126, 128, 434
BspANI	GGCC	2 cut(s)	726, 987
BspCNI	CTCAG	4 cut(s)	283, 361, 800, 815
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	411, 522
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	3 cut(s)	226, 404, 417
BsrGI	TGTACA	1 cut(s)	980
BsrI	ACTGG	6 cut(s)	189, 679, 727, 774, 846, 1042
BssECI	CCNNGG	3 cut(s)	86, 126, 550
BssMI	GATC	3 cut(s)	46, 218, 409
BssNI	GRCGYC	1 cut(s)	1030
BssT1I	CCWWGG	2 cut(s)	86, 550
Bst2UI	CCWGG	3 cut(s)	293, 407, 989
Bst4CI	ACNGT	6 cut(s)	73, 100, 319, 328, 768, 980
BstACI	GRCGYC	1 cut(s)	1030
BstAUI	TGTACA	1 cut(s)	980
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	3 cut(s)	8, 926, 930
BstDEI	CTNAG	4 cut(s)	270, 348, 787, 802
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	65, 143, 235, 1038
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	49, 221, 412
BstMAI	GTCTC	1 cut(s)	969
BstMBI	GATC	3 cut(s)	46, 218, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	3 cut(s)	293, 407, 989
BstNSI	RCATGY	3 cut(s)	10, 488, 653
BstSCI	CCNGG	3 cut(s)	291, 405, 987
BstSFI	CTRYAG	2 cut(s)	324, 810
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	22, 313, 890
BstV2I	GAAGAC	2 cut(s)	574, 999
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	726, 987
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	65, 143, 235, 1038
BtsIMutI	CAGTG	5 cut(s)	69, 196, 315, 333, 720
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	8, 926, 930
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	749
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	5 cut(s)	96, 672, 860, 949, 981
CviAII	CATG	8 cut(s)	7, 332, 485, 632, 650, 819, 863, 917
CviQI	GTAC	5 cut(s)	96, 672, 860, 949, 981
DdeI	CTNAG	4 cut(s)	270, 348, 787, 802
DpnI	GATC	3 cut(s)	48, 220, 411
DpnII	GATC	3 cut(s)	46, 218, 409
EaeI	YGGCCR	1 cut(s)	724
Eco130I	CCWWGG	2 cut(s)	86, 550
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	63
Eco72I	CACGTG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	952
EcoRI	GAATTC	1 cut(s)	823
EcoRII	CCWGG	3 cut(s)	291, 405, 987
EcoT14I	CCWWGG	2 cut(s)	86, 550
EcoT22I	ATGCAT	2 cut(s)	145, 871
ErhI	CCWWGG	2 cut(s)	86, 550
FaeI	CATG	8 cut(s)	10, 335, 488, 635, 653, 822, 866, 920
FalI	AAGNNNNNCTT	4 cut(s)	576, 608, 991, 1023
FaqI	GGGAC	1 cut(s)	980
FatI	CATG	8 cut(s)	6, 331, 484, 631, 649, 818, 862, 916
FauNDI	CATATG	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	6 cut(s)	11, 126, 129, 302, 435, 904
FokI	GGATG	4 cut(s)	52, 130, 242, 1025
Fsp4HI	GCNGC	6 cut(s)	11, 126, 129, 302, 435, 904
FspBI	CTAG	4 cut(s)	489, 741, 834, 849
GluI	GCNGC	6 cut(s)	11, 126, 129, 302, 435, 904
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	726, 987
HgaI	GACGC	1 cut(s)	1019
Hin1I	GRCGYC	1 cut(s)	1030
Hin1II	CATG	8 cut(s)	10, 335, 488, 635, 653, 822, 866, 920
HincII	GTYRAC	2 cut(s)	839, 854
HindII	GTYRAC	2 cut(s)	839, 854
HinfI	GANTC	6 cut(s)	175, 185, 556, 635, 806, 913
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	4 cut(s)	315, 839, 854, 1022
Hpy188I	TCNGA	7 cut(s)	22, 82, 184, 211, 617, 790, 805
Hpy188III	TCNNGA	4 cut(s)	506, 632, 639, 954
Hpy8I	GTNNAC	4 cut(s)	315, 839, 854, 1022
HpyAV	CCTTC	3 cut(s)	332, 654, 965
HpyCH4III	ACNGT	6 cut(s)	73, 100, 319, 328, 768, 980
HpyCH4IV	ACGT	2 cut(s)	577, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	4 cut(s)	270, 348, 787, 802
HpySE526I	ACGT	2 cut(s)	577, 682
Hsp92I	GRCGYC	1 cut(s)	1030
Hsp92II	CATG	8 cut(s)	10, 335, 488, 635, 653, 822, 866, 920
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	46, 218, 409
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	3 cut(s)	22, 313, 890
LweI	GCATC	3 cut(s)	152, 746, 856
MaeI	CTAG	4 cut(s)	489, 741, 834, 849
MaeII	ACGT	2 cut(s)	577, 682
MaeIII	GTNAC	2 cut(s)	252, 374
MalI	GATC	3 cut(s)	48, 220, 411
MboI	GATC	3 cut(s)	46, 218, 409
MboII	GAAGA	6 cut(s)	69, 147, 579, 620, 819, 999
MflI	RGATCY	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	4 cut(s)	148, 606, 823, 883
MluNI	TGGCCA	1 cut(s)	726
MlyI	GAGTC	2 cut(s)	184, 907
MmeI	TCCRAC	2 cut(s)	259, 454
Mox20I	TGGCCA	1 cut(s)	726
Mph1103I	ATGCAT	2 cut(s)	145, 871
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	293, 407, 989
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	3 cut(s)	293, 407, 989
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	3 cut(s)	46, 218, 409
NlaIII	CATG	8 cut(s)	10, 335, 488, 635, 653, 822, 866, 920
NlaIV	GGNNCC	2 cut(s)	411, 522
NmuCI	GTSAC	2 cut(s)	252, 374
NsiI	ATGCAT	2 cut(s)	145, 871
NspI	RCATGY	3 cut(s)	10, 488, 653
PaeI	GCATGC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	631
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	185, 556, 635, 806
PkrI	GCNGC	6 cut(s)	12, 127, 130, 303, 436, 905
PleI	GAGTC	2 cut(s)	183, 907
PmaCI	CACGTG	1 cut(s)	578
PmlI	CACGTG	1 cut(s)	578
PpsI	GAGTC	2 cut(s)	183, 907
Ppu21I	YACGTR	1 cut(s)	578
Psp6I	CCWGG	3 cut(s)	291, 405, 987
PspCI	CACGTG	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	3 cut(s)	291, 405, 987
PspN4I	GGNNCC	2 cut(s)	411, 522
PspPI	GGNCC	1 cut(s)	749
PstI	CTGCAG	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	5 cut(s)	97, 673, 861, 950, 982
RsaNI	GTAC	5 cut(s)	96, 672, 860, 949, 981
RseI	CAYNNNNRTG	1 cut(s)	648
SacII	CCGCGG	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	6 cut(s)	11, 126, 129, 302, 435, 904
Sau3AI	GATC	3 cut(s)	46, 218, 409
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	2 cut(s)	184, 907
ScrFI	CCNGG	3 cut(s)	293, 407, 989
SfaNI	GCATC	3 cut(s)	152, 746, 856
SfcI	CTRYAG	2 cut(s)	324, 810
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	833
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	4 cut(s)	148, 606, 823, 883
SsiI	CCGC	3 cut(s)	126, 128, 434
SspMI	CTAG	4 cut(s)	489, 741, 834, 849
StyD4I	CCNGG	3 cut(s)	291, 405, 987
StyI	CCWWGG	2 cut(s)	86, 550
TaaI	ACNGT	6 cut(s)	73, 100, 319, 328, 768, 980
TaiI	ACGT	2 cut(s)	580, 685
TaqI	TCGA	1 cut(s)	853
TasI	AATT	4 cut(s)	148, 606, 823, 883
TatI	WGTACW	1 cut(s)	980
TauI	GCSGC	3 cut(s)	128, 131, 437
TfiI	GAWTC	4 cut(s)	185, 556, 635, 806
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	5 cut(s)	76, 196, 322, 333, 727
TseFI	GTSAC	2 cut(s)	252, 374
TseI	GCWGC	3 cut(s)	10, 301, 903
Tsp45I	GTSAC	2 cut(s)	252, 374
TspDTI	ATGAA	7 cut(s)	141, 351, 620, 648, 750, 768, 924
TspRI	CASTG	5 cut(s)	76, 196, 322, 333, 727
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	3 cut(s)	10, 488, 653
XcmI	CCANNNNNNNNNTGG	2 cut(s)	838, 917
XmiI	GTMKAC	1 cut(s)	853
XspI	CTAG	4 cut(s)	489, 741, 834, 849
Zsp2I	ATGCAT	2 cut(s)	145, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.