Prupe.4G249900_v2.0.a1

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
16709805 .. 16714582
4778 bp
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UTR
Exon/CDS
Intron
Prupe.4G249900.1

Sequence Viewer

Length: 1056 bp
ATGCAGTCAAAGTCTGAAACTGAAAATCGACTTCATGCTGATCATCATACCATCCCACCAAACAGTGTTTATTCAGAACCGTGGTGGCGGGGTGTTGGCTATAACCCCATCTCCCCAGCCGTTACAGGGAGGAATGCATCCAACTCATCTTCGTTAGAATGCCCAAATGGTGGTTCGGAGTCCAATGACGATCGATCATTGTCCAATGATGAGCCAAATGAAGATGATGATGATGATGCCACCAAAGAGTCACAGATTACGTCTCCAAGATCAGCTGGCAATGATGGGCAAGAGCGCCAAAATATGCCGCATGTTGGATCTACTGTACCTACAGTTCGTGATGATTGCCTTGCGCAACCGCCACAGCTTGAGCTTGTTGGTCACTCTATTGCTTGTGCTTCAAATCCTTATCAGGATCCTTATTATGCGGGAATGATGGCGGCTTATGGACATCAGCCTTTGGGCTATCCTCCTTTTCTTGGAATGCCACATGCTAGAATGCCATTGCCTCTTGAGATGGCACAGGAGCCTGTGTATGTGAATGCAAAACAATACCAAGGGATTCTAAGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAGGAAGCTAATTAAAGTCAGGAAGCCATATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCGAGAGGTACTGGAGGACGTTTTGCAAAGAAAACTAATGGTGATAAATCAAACAGCACTGGCCAAGAAAAGGGCACAGGCTCTGGTCCAGCCCACTCGTCACAATCTGGCAGTTCATCAGGTTCAGAACCCTTTCCCTCAGATTCTGCCGAAACATGGAATTCCTCCAATAGTCAGCAAGAAGGAAGAGGATCCCAAGTGCATGAAGCGTACCCAGGTCACAATTATGCAAATGGCAGTGGCTGCTTCCAGACTCATGGTGGCTTGCAGGCTTCGATGTATCCTTCATACTCGGGCAAGAGAGGGGAAGAAGGAGATTGTACAGGCCAGCAACGGGGAAGTATTTCTTCGAATCAGGCCTCACAGAGGCGTCTTGCCATCCAGTGA

Protein Analysis

352

Amino Acids

38.17

Weight (kDa)

6.71

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 354
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 5 cut(s) 88, 308, 359, 428, 440
AclWI GGATC 5 cut(s) 325, 410, 423, 855, 868
AcoI YGGCCR 1 cut(s) 730
AcsI RAATTY 1 cut(s) 829
AcvI CACGTG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 1039
AfaI GTAC 4 cut(s) 327, 679, 881, 991
AfiI CCNNNNNNNGG 8 cut(s) 126, 170, 314, 479, 739, 825, 1003, 1035
AgsI TTSAA 2 cut(s) 402, 602
AjnI CCWGG 1 cut(s) 883
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 4 cut(s) 275, 367, 373, 610
AluI AGCT 4 cut(s) 275, 367, 373, 610
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 5 cut(s) 325, 410, 423, 855, 868
AlwNI CAGNNNCTG 3 cut(s) 752, 815, 912
Ama87I CYCGRG 1 cut(s) 961
AoxI GGCC 3 cut(s) 730, 994, 1026
ApeKI GCWGC 1 cut(s) 912
ApoI RAATTY 1 cut(s) 829
Asp700I GAANNNNTTC 2 cut(s) 801, 1012
AspLEI GCGC 2 cut(s) 297, 355
AspS9I GGNCC 1 cut(s) 755
AsuHPI GGTGA 1 cut(s) 722
AsuII TTCGAA 1 cut(s) 1019
AvaI CYCGRG 1 cut(s) 961
AvaII GGWCC 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 746
BalI TGGCCA 1 cut(s) 732
BamHI GGATCC 2 cut(s) 415, 860
BbrPI CACGTG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 580
BbvI GCAGC 1 cut(s) 899
BccI CCATC 6 cut(s) 59, 116, 278, 430, 511, 1055
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 885
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 298
BfuI GTATCC 1 cut(s) 960
BisI GCNGC 3 cut(s) 308, 441, 913
BlsI GCNGC 3 cut(s) 309, 442, 914
Bme1390I CCNGG 1 cut(s) 885
Bme18I GGWCC 1 cut(s) 755
BmeT110I CYCGRG 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 755
BmiI GGNNCC 3 cut(s) 417, 528, 862
BmrFI CCNGG 1 cut(s) 885
BmsI GCATC 2 cut(s) 146, 226
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 702
Bpu14I TTCGAA 1 cut(s) 1019
BpuEI CTTGAG 2 cut(s) 389, 533
Bsa29I ATCGAT 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 1039
BsaJI CCNNGG 3 cut(s) 80, 556, 883
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 518, 548
Bsc4I CCNNNNNNNGG 8 cut(s) 126, 170, 314, 479, 739, 825, 1003, 1035
Bse1I ACTGG 3 cut(s) 685, 733, 1051
Bse3DI GCAATG 2 cut(s) 286, 503
BseBI CCWGG 1 cut(s) 885
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 3 cut(s) 80, 556, 883
BseGI GGATG 3 cut(s) 51, 137, 1047
BseLI CCNNNNNNNGG 8 cut(s) 126, 170, 314, 479, 739, 825, 1003, 1035
BseMI GCAATG 2 cut(s) 286, 503
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 3 cut(s) 685, 733, 1051
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 1 cut(s) 899
BseYI CCCAGC 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 732, 996, 1028
BshVI ATCGAT 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 961
BslI CCNNNNNNNGG 8 cut(s) 126, 170, 314, 479, 739, 825, 1003, 1035
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsmI GAATGC 5 cut(s) 139, 164, 489, 504, 547
BsnI GGCC 3 cut(s) 732, 996, 1028
BsoBI CYCGRG 1 cut(s) 961
Bsp119I TTCGAA 1 cut(s) 1019
Bsp1286I GDGCHC 1 cut(s) 746
Bsp1407I TGTACA 1 cut(s) 989
Bsp143I GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
BspACI CCGC 5 cut(s) 88, 308, 359, 428, 440
BspANI GGCC 3 cut(s) 732, 996, 1028
BspCNI CTCAG 1 cut(s) 821
BspDI ATCGAT 1 cut(s) 193
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 3 cut(s) 417, 528, 862
BspPI GGATC 5 cut(s) 325, 410, 423, 855, 868
BspT104I TTCGAA 1 cut(s) 1019
BsrDI GCAATG 2 cut(s) 286, 503
BsrGI TGTACA 1 cut(s) 989
BsrI ACTGG 3 cut(s) 685, 733, 1051
BssECI CCNNGG 3 cut(s) 80, 556, 883
BssMI GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
BssNI GRCGYC 1 cut(s) 1039
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 885
Bst4CI ACNGT 4 cut(s) 65, 81, 325, 334
Bst6I CTCTTC 1 cut(s) 850
BstACI GRCGYC 1 cut(s) 1039
BstAPI GCANNNNNTGC 1 cut(s) 912
BstAUI TGTACA 1 cut(s) 989
BstBAI YACGTR 1 cut(s) 584
BstBI TTCGAA 1 cut(s) 1019
BstC8I GCNNGC 4 cut(s) 277, 935, 939, 998
BstDEI CTNAG 2 cut(s) 566, 808
BstDSI CCRYGG 1 cut(s) 80
BstENI CCTNNNNNAGG 1 cut(s) 1033
BstF5I GGATG 3 cut(s) 51, 137, 1047
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 2 cut(s) 297, 355
BstKTI GATC 7 cut(s) 43, 193, 197, 272, 320, 418, 863
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 912
BstNI CCWGG 1 cut(s) 885
BstNSI RCATGY 3 cut(s) 314, 494, 659
BstSCI CCNGG 1 cut(s) 883
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 1 cut(s) 899
BstV2I GAAGAC 1 cut(s) 580
BstX2I RGATCY 3 cut(s) 317, 415, 860
BstXI CCANNNNNNTGG 1 cut(s) 926
BstYI RGATCY 3 cut(s) 317, 415, 860
Bsu15I ATCGAT 1 cut(s) 193
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 3 cut(s) 732, 996, 1028
BsuTUI ATCGAT 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 3 cut(s) 51, 137, 1047
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 3 cut(s) 70, 726, 913
Cac8I GCNNGC 4 cut(s) 277, 935, 939, 998
CaiI CAGNNNCTG 3 cut(s) 752, 815, 912
CciI TCATGA 1 cut(s) 637
CfoI GCGC 2 cut(s) 297, 355
Cfr13I GGNCC 1 cut(s) 755
ClaI ATCGAT 1 cut(s) 193
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 4 cut(s) 326, 678, 880, 990
CviAII CATG 8 cut(s) 35, 311, 491, 638, 656, 825, 872, 926
CviQI GTAC 4 cut(s) 326, 678, 880, 990
DdeI CTNAG 2 cut(s) 566, 808
DpnI GATC 7 cut(s) 42, 192, 196, 271, 319, 417, 862
DpnII GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 1028
Eco47I GGWCC 1 cut(s) 755
Eco72I CACGTG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 961
EcoNI CCTNNNNNAGG 1 cut(s) 1033
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 883
EcoT14I CCWWGG 1 cut(s) 556
EcoT22I ATGCAT 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 556
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 8 cut(s) 38, 314, 494, 641, 659, 828, 875, 929
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 1000, 1032
FatI CATG 8 cut(s) 34, 310, 490, 637, 655, 824, 871, 925
FauI CCCGC 2 cut(s) 81, 421
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 308, 441, 913
FokI GGATG 3 cut(s) 38, 124, 1034
Fsp4HI GCNGC 3 cut(s) 308, 441, 913
FspBI CTAG 1 cut(s) 495
FspI TGCGCA 1 cut(s) 354
GlaI GCGC 2 cut(s) 296, 354
GluI GCNGC 3 cut(s) 308, 441, 913
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 3 cut(s) 732, 996, 1028
HgaI GACGC 1 cut(s) 1028
HhaI GCGC 2 cut(s) 297, 355
Hin1I GRCGYC 1 cut(s) 1039
Hin1II CATG 8 cut(s) 38, 314, 494, 641, 659, 828, 875, 929
Hin6I GCGC 2 cut(s) 295, 353
HinP1I GCGC 2 cut(s) 295, 353
HinfI GANTC 7 cut(s) 179, 248, 562, 641, 812, 922, 1021
HphI GGTGA 1 cut(s) 722
Hpy188I TCNGA 5 cut(s) 16, 76, 178, 796, 811
Hpy188III TCNNGA 7 cut(s) 338, 413, 512, 622, 638, 645, 919
HpyAV CCTTC 4 cut(s) 660, 845, 963, 974
HpyCH4III ACNGT 4 cut(s) 65, 81, 325, 334
HpyCH4IV ACGT 3 cut(s) 260, 583, 688
HpyCH4V TGCA 8 cut(s) 4, 137, 545, 587, 695, 871, 899, 937
HpyF10VI GCNNNNNNNGC 1 cut(s) 912
HpyF3I CTNAG 2 cut(s) 566, 808
HpySE526I ACGT 3 cut(s) 260, 583, 688
Hsp92I GRCGYC 1 cut(s) 1039
Hsp92II CATG 8 cut(s) 38, 314, 494, 641, 659, 828, 875, 929
HspAI GCGC 2 cut(s) 295, 353
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 1 cut(s) 899
LweI GCATC 2 cut(s) 146, 226
MaeI CTAG 1 cut(s) 495
MaeII ACGT 3 cut(s) 260, 583, 688
MaeIII GTNAC 5 cut(s) 121, 249, 380, 768, 887
MalI GATC 7 cut(s) 42, 192, 196, 271, 319, 417, 862
MboI GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
MboII GAAGA 7 cut(s) 141, 233, 585, 626, 867, 989, 1008
MflI RGATCY 3 cut(s) 317, 415, 860
MhlI GDGCHC 1 cut(s) 746
MlsI TGGCCA 1 cut(s) 732
MluCI AATT 3 cut(s) 612, 829, 892
MluNI TGGCCA 1 cut(s) 732
MlyI GAGTC 3 cut(s) 188, 257, 916
MmeI TCCRAC 2 cut(s) 165, 295
Mox20I TGGCCA 1 cut(s) 732
Mph1103I ATGCAT 1 cut(s) 139
MroXI GAANNNNTTC 2 cut(s) 801, 1012
MscI TGGCCA 1 cut(s) 732
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 654, 894
Msp20I TGGCCA 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 885
Mva1269I GAATGC 5 cut(s) 139, 164, 489, 504, 547
MvaI CCWGG 1 cut(s) 885
MwoI GCNNNNNNNGC 1 cut(s) 912
NdeII GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
NlaIII CATG 8 cut(s) 38, 314, 494, 641, 659, 828, 875, 929
NlaIV GGNNCC 3 cut(s) 417, 528, 862
NmuCI GTSAC 4 cut(s) 249, 380, 768, 887
NsbI TGCGCA 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 3 cut(s) 314, 494, 659
NspV TTCGAA 1 cut(s) 1019
PagI TCATGA 1 cut(s) 637
PceI AGGCCT 1 cut(s) 1028
PctI GAATGC 5 cut(s) 139, 164, 489, 504, 547
PdmI GAANNNNTTC 2 cut(s) 801, 1012
PfeI GAWTC 4 cut(s) 562, 641, 812, 1021
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 3 cut(s) 309, 442, 914
Ple19I CGATCG 1 cut(s) 193
PleI GAGTC 3 cut(s) 187, 256, 916
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 3 cut(s) 187, 256, 916
Ppu21I YACGTR 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 883
PspCI CACGTG 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 1 cut(s) 883
PspN4I GGNNCC 3 cut(s) 417, 528, 862
PspPI GGNCC 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 318, 350
PstNI CAGNNNCTG 3 cut(s) 752, 815, 912
PsuI RGATCY 3 cut(s) 317, 415, 860
PvuI CGATCG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 4 cut(s) 327, 679, 881, 991
RsaNI GTAC 4 cut(s) 326, 678, 880, 990
RseI CAYNNNNRTG 2 cut(s) 654, 894
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 308, 441, 913
Sau3AI GATC 7 cut(s) 40, 190, 194, 269, 317, 415, 860
Sau96I GGNCC 1 cut(s) 755
SchI GAGTC 3 cut(s) 188, 257, 916
ScrFI CCNGG 1 cut(s) 885
SduI GDGCHC 1 cut(s) 746
SfaNI GCATC 2 cut(s) 146, 226
SfcI CTRYAG 1 cut(s) 330
SfuI TTCGAA 1 cut(s) 1019
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 2 cut(s) 654, 894
SmlI CTYRAG 2 cut(s) 368, 512
SmoI CTYRAG 2 cut(s) 368, 512
Sse9I AATT 3 cut(s) 612, 829, 892
SseBI AGGCCT 1 cut(s) 1028
SsiI CCGC 5 cut(s) 88, 308, 359, 428, 440
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 1 cut(s) 1028
StyD4I CCNGG 1 cut(s) 883
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 4 cut(s) 65, 81, 325, 334
TaiI ACGT 3 cut(s) 263, 586, 691
TaqI TCGA 4 cut(s) 28, 193, 944, 1019
TasI AATT 3 cut(s) 612, 829, 892
TatI WGTACW 1 cut(s) 989
TauI GCSGC 2 cut(s) 310, 443
TfiI GAWTC 4 cut(s) 562, 641, 812, 1021
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 3 cut(s) 70, 733, 913
TseFI GTSAC 4 cut(s) 249, 380, 768, 887
TseI GCWGC 1 cut(s) 912
Tsp45I GTSAC 4 cut(s) 249, 380, 768, 887
TspDTI ATGAA 7 cut(s) 23, 234, 626, 654, 774, 888, 945
TspRI CASTG 3 cut(s) 70, 733, 913
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 755
XagI CCTNNNNNAGG 1 cut(s) 1033
XapI RAATTY 1 cut(s) 829
XceI RCATGY 3 cut(s) 314, 494, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 926
XmnI GAANNNNTTC 2 cut(s) 801, 1012
XspI CTAG 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.