Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

21759108 .. 21764801

Gene Structure 5694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCAGCCAAAGTCCGAAACTGAAAATCAAATACGTGTTGATCATCATACCATTCCACCATCCACTGTTTCTTCACAACCTTGGTGGCGTACTGGGTATAACCCCACCTCCCCAACTGTGACAGGGAGAAATGTTTCCACTTCATCTTCGTTTGAGCCCCCAAAGAGTCATTCAGAATCCAGTGATGACAAATCTGTTTCTGATGATGGATCAAATGAGGATGATGATAATGCCAAAGAGTCACACTTGACATCTCCTTTGTCAGTTGGAAATAAAAACCAGGATTTGCAGCTTGATTCGTCCACTGTTCCTACTGTACATGATGAAGGCGTTACTCATCCACCACAGCTTGAACTTATCGGTCACTCTATCGCTTGTGCCTCAAATCCTTACCAGGATCCATACTACGCAGGGATGATGGCGGCTTATGGACATCAGCCTTTGGGTTATCCTCCTTTTGTTGGAATGCCACATGCTAGAATGCCTTTGCCCCTAGAGATGGCACAGGAGCCTGTATATGTCAATGCAAAACAATACCAAGGAATTCTACGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAAGAAGCTAATTAAAGTCAGAAAGCCATATCTTCACGAATCACGACATCAACATGCTATGAGAAGGGCAAGAGGTACTGGAGGACGTTTTGCAAAGAAGACAAATGGTGATACTTTAAAGACCGGTGGCCAAGAAAAGGCATCACATTCATCACAGTCTGCCAGTTCATCAGGCTCGGAACCCTTGCCCTCAGATTCTGCAGAAACATGGAATTCTTCCATCAGTCAACAAGAAGCTAGTCGACCCCAAGTCCATGATGCATATGCCACTAACAATTATGTAAATGGTAGTGGCTGCTACCAGACTCATGGTGGCTTGCAGGCTTCATTGTATCGTACGTATTCGGGAAAAAGAGGTGATGAAGGAGATTGTATGGGCCAGCAACGGGGAAGTATATCATCAAATCAGGGTTCACAGAGGCGTCTTGCCATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

341

Amino Acids

37.23

Weight (kDa)

7.8

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	170 - 225	3.8e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	826
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	3 cut(s)	217, 392, 405
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	2 cut(s)	543, 796
AcvI	CACGTG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	1006
AfaI	GTAC	4 cut(s)	91, 318, 661, 922
AfiI	CCNNNNNNNGG	4 cut(s)	461, 499, 721, 970
AflIII	ACRYGT	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	707
AgsI	TTSAA	2 cut(s)	353, 584
AhdI	GACNNNNNGTC	1 cut(s)	833
AjnI	CCWGG	2 cut(s)	279, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	4 cut(s)	292, 349, 592, 821
AluI	AGCT	4 cut(s)	292, 349, 592, 821
AlwI	GGATC	3 cut(s)	217, 392, 405
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	2 cut(s)	712, 961
ApeKI	GCWGC	3 cut(s)	4, 289, 879
ApoI	RAATTY	2 cut(s)	543, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AsiGI	ACCGGT	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	961
AsuHPI	GGTGA	2 cut(s)	704, 953
BalI	TGGCCA	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	159
BbrPI	CACGTG	1 cut(s)	566
BbsI	GAAGAC	2 cut(s)	562, 689
BbvI	GCAGC	3 cut(s)	16, 301, 866
BccI	CCATC	6 cut(s)	67, 200, 412, 493, 812, 1022
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	281, 395
BclI	TGATCA	1 cut(s)	40
BfaI	CTAG	3 cut(s)	477, 494, 822
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	4 cut(s)	5, 290, 423, 880
BlsI	GCNGC	4 cut(s)	6, 291, 424, 881
Bme1390I	CCNGG	2 cut(s)	281, 395
BmeRI	GACNNNNNGTC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	961
BmiI	GGNNCC	3 cut(s)	399, 510, 765
BmrFI	CCNGG	2 cut(s)	281, 395
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	734, 832
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	2 cut(s)	562, 689
BpmI	CTGGAG	1 cut(s)	684
BsaAI	YACGTR	3 cut(s)	35, 566, 924
BsaHI	GRCGYC	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	80, 538
BsaWI	WCCGGW	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	4 cut(s)	461, 499, 721, 970
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	5 cut(s)	97, 180, 667, 747, 1018
BseBI	CCWGG	2 cut(s)	281, 395
BseDI	CCNNGG	2 cut(s)	80, 538
BseGI	GGATG	5 cut(s)	59, 226, 337, 420, 1014
BseLI	CCNNNNNNNGG	4 cut(s)	461, 499, 721, 970
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	5 cut(s)	97, 180, 667, 747, 1018
BseXI	GCAGC	3 cut(s)	16, 301, 866
BshFI	GGCC	2 cut(s)	714, 963
BshTI	ACCGGT	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	708
BsiWI	CGTACG	1 cut(s)	920
BslI	CCNNNNNNNGG	4 cut(s)	461, 499, 721, 970
BsmI	GAATGC	2 cut(s)	471, 486
BsnI	GGCC	2 cut(s)	714, 963
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	40, 209, 397
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	714, 963
BspCNI	CTCAG	1 cut(s)	788
BspLI	GGNNCC	3 cut(s)	399, 510, 765
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	3 cut(s)	217, 392, 405
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	5 cut(s)	97, 180, 667, 747, 1018
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	80, 538
BssMI	GATC	3 cut(s)	40, 209, 397
BssNI	GRCGYC	1 cut(s)	1006
BssT1I	CCWWGG	2 cut(s)	80, 538
Bst2UI	CCWGG	2 cut(s)	281, 395
Bst4CI	ACNGT	5 cut(s)	67, 118, 307, 316, 741
BstACI	GRCGYC	1 cut(s)	1006
BstAUI	TGTACA	1 cut(s)	316
BstBAI	YACGTR	3 cut(s)	35, 566, 924
BstC8I	GCNNGC	3 cut(s)	902, 906, 965
BstDEI	CTNAG	1 cut(s)	775
BstF5I	GGATG	5 cut(s)	59, 226, 337, 420, 1014
BstKTI	GATC	3 cut(s)	43, 212, 400
BstMBI	GATC	3 cut(s)	40, 209, 397
BstNI	CCWGG	2 cut(s)	281, 395
BstNSI	RCATGY	2 cut(s)	476, 641
BstSCI	CCNGG	2 cut(s)	279, 393
BstSFI	CTRYAG	1 cut(s)	783
BstSNI	TACGTA	1 cut(s)	924
BstV1I	GCAGC	3 cut(s)	16, 301, 866
BstV2I	GAAGAC	2 cut(s)	562, 689
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	714, 963
BtsCI	GGATG	5 cut(s)	59, 226, 337, 420, 1014
BtsIMutI	CAGTG	3 cut(s)	63, 187, 303
Cac8I	GCNNGC	3 cut(s)	902, 906, 965
CaiI	CAGNNNCTG	1 cut(s)	782
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	961
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	4 cut(s)	90, 317, 660, 921
CspAI	ACCGGT	1 cut(s)	707
CspCI	CAANNNNNGTGG	2 cut(s)	65, 100
CviAII	CATG	6 cut(s)	320, 473, 638, 792, 839, 893
CviQI	GTAC	4 cut(s)	90, 317, 660, 921
DdeI	CTNAG	1 cut(s)	775
DpnI	GATC	3 cut(s)	42, 211, 399
DpnII	GATC	3 cut(s)	40, 209, 397
DraI	TTTAAA	1 cut(s)	702
DriI	GACNNNNNGTC	1 cut(s)	833
EaeI	YGGCCR	1 cut(s)	712
Eam1105I	GACNNNNNGTC	1 cut(s)	833
Eco105I	TACGTA	1 cut(s)	924
Eco130I	CCWWGG	2 cut(s)	80, 538
Eco24I	GRGCYC	1 cut(s)	159
Eco72I	CACGTG	1 cut(s)	566
EcoRI	GAATTC	2 cut(s)	543, 796
EcoRII	CCWGG	2 cut(s)	279, 393
EcoT14I	CCWWGG	2 cut(s)	80, 538
EcoT22I	ATGCAT	1 cut(s)	847
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	80, 538
FaeI	CATG	6 cut(s)	323, 476, 641, 795, 842, 896
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FatI	CATG	6 cut(s)	319, 472, 637, 791, 838, 892
FauNDI	CATATG	1 cut(s)	847
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	826
Fnu4HI	GCNGC	4 cut(s)	5, 290, 423, 880
FokI	GGATG	5 cut(s)	46, 233, 324, 427, 1001
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	5, 290, 423, 880
FspBI	CTAG	3 cut(s)	477, 494, 822
GluI	GCNGC	4 cut(s)	5, 290, 423, 880
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	714, 963
HapII	CCGG	1 cut(s)	708
HgaI	GACGC	1 cut(s)	995
Hin1I	GRCGYC	1 cut(s)	1006
Hin1II	CATG	6 cut(s)	323, 476, 641, 795, 842, 896
HincII	GTYRAC	2 cut(s)	812, 827
HindII	GTYRAC	2 cut(s)	812, 827
HinfI	GANTC	7 cut(s)	166, 176, 239, 296, 623, 779, 889
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	2 cut(s)	704, 953
Hpy166II	GTNNAC	4 cut(s)	303, 812, 827, 998
Hpy188I	TCNGA	6 cut(s)	16, 175, 202, 605, 763, 778
Hpy188III	TCNNGA	3 cut(s)	620, 627, 930
Hpy8I	GTNNAC	4 cut(s)	303, 812, 827, 998
HpyAV	CCTTC	3 cut(s)	320, 642, 941
HpyCH4III	ACNGT	5 cut(s)	67, 118, 307, 316, 741
HpyCH4IV	ACGT	4 cut(s)	34, 565, 670, 923
HpyCH4V	TGCA	8 cut(s)	4, 289, 527, 569, 677, 785, 845, 904
HpyF3I	CTNAG	1 cut(s)	775
HpySE526I	ACGT	4 cut(s)	34, 565, 670, 923
Hsp92I	GRCGYC	1 cut(s)	1006
Hsp92II	CATG	6 cut(s)	323, 476, 641, 795, 842, 896
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	40, 209, 397
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	16, 301, 866
LweI	GCATC	2 cut(s)	734, 832
MaeI	CTAG	3 cut(s)	477, 494, 822
MaeII	ACGT	4 cut(s)	34, 565, 670, 923
MaeIII	GTNAC	4 cut(s)	118, 240, 331, 362
MalI	GATC	3 cut(s)	42, 211, 399
MboI	GATC	3 cut(s)	40, 209, 397
MboII	GAAGA	6 cut(s)	63, 138, 567, 608, 694, 792
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	4 cut(s)	543, 594, 796, 859
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	3 cut(s)	175, 248, 883
MmeI	TCCRAC	2 cut(s)	247, 442
MnlI	CCTC	9 cut(s)	118, 211, 391, 462, 650, 659, 784, 932, 996
Mox20I	TGGCCA	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	847
MroXI	GAANNNNTTC	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	2 cut(s)	597, 701
MslI	CAYNNNNRTG	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	714
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	2 cut(s)	281, 395
Mva1269I	GAATGC	2 cut(s)	471, 486
MvaI	CCWGG	2 cut(s)	281, 395
NdeI	CATATG	1 cut(s)	847
NdeII	GATC	3 cut(s)	40, 209, 397
NlaIII	CATG	6 cut(s)	323, 476, 641, 795, 842, 896
NlaIV	GGNNCC	3 cut(s)	399, 510, 765
NmuCI	GTSAC	3 cut(s)	118, 240, 362
NsiI	ATGCAT	1 cut(s)	847
NspI	RCATGY	2 cut(s)	476, 641
PctI	GAATGC	2 cut(s)	471, 486
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	4 cut(s)	176, 296, 623, 779
Pfl23II	CGTACG	1 cut(s)	920
PinAI	ACCGGT	1 cut(s)	707
PkrI	GCNGC	4 cut(s)	6, 291, 424, 881
PleI	GAGTC	3 cut(s)	174, 247, 883
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	3 cut(s)	174, 247, 883
Ppu21I	YACGTR	3 cut(s)	35, 566, 924
Psp6I	CCWGG	2 cut(s)	279, 393
PspCI	CACGTG	1 cut(s)	566
PspGI	CCWGG	2 cut(s)	279, 393
PspLI	CGTACG	1 cut(s)	920
PspN4I	GGNNCC	3 cut(s)	399, 510, 765
PspPI	GGNCC	1 cut(s)	961
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	4 cut(s)	91, 318, 661, 922
RsaNI	GTAC	4 cut(s)	90, 317, 660, 921
RseI	CAYNNNNRTG	1 cut(s)	636
SalI	GTCGAC	1 cut(s)	825
SaqAI	TTAA	2 cut(s)	597, 701
SatI	GCNGC	4 cut(s)	5, 290, 423, 880
Sau3AI	GATC	3 cut(s)	40, 209, 397
Sau96I	GGNCC	1 cut(s)	961
SchI	GAGTC	3 cut(s)	175, 248, 883
ScrFI	CCNGG	2 cut(s)	281, 395
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	734, 832
SfcI	CTRYAG	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	636
SnaBI	TACGTA	1 cut(s)	924
Sse9I	AATT	4 cut(s)	543, 594, 796, 859
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	477, 494, 822
StyD4I	CCNGG	2 cut(s)	279, 393
StyI	CCWWGG	2 cut(s)	80, 538
TaaI	ACNGT	5 cut(s)	67, 118, 307, 316, 741
TaiI	ACGT	4 cut(s)	37, 568, 673, 926
TaqI	TCGA	1 cut(s)	826
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	4 cut(s)	543, 594, 796, 859
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	4 cut(s)	176, 296, 623, 779
Tru1I	TTAA	2 cut(s)	597, 701
Tru9I	TTAA	2 cut(s)	597, 701
TscAI	CASTG	3 cut(s)	70, 187, 310
TseFI	GTSAC	3 cut(s)	118, 240, 362
TseI	GCWGC	3 cut(s)	4, 289, 879
Tsp45I	GTSAC	3 cut(s)	118, 240, 362
TspDTI	ATGAA	6 cut(s)	132, 339, 723, 741, 900, 960
TspRI	CASTG	3 cut(s)	70, 187, 310
XapI	RAATTY	2 cut(s)	543, 796
XceI	RCATGY	2 cut(s)	476, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	3 cut(s)	477, 494, 822
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.