Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Forward (+)

35738563 .. 35743815

Gene Structure 5253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCAGCCAAAGTCTGATACTGAAAACCGAATACCTGCTGATCATCATACCATTCCACCATCCACTGTTTCTTCAGAACCTTGGTGGCGTACTGTTGGGTATAACCCCACCTCCCCAGCCGTGGCAGGGATAAATGCATCCAATTCATCTTCTTTTGAACGCCCAAAGAGTCGTTCAGAATCCAGTGATGACAAATCTGTTTCTGATGATGGATCAAATGAGGATGATGATAATGCCACCAAAAAGTCACAAATGACATCTCCTCAGTCAGTTGGAAATAAAAACCAGGATTTGCAGCTTGTTTCATCCACTGTTCCTACAGTGCATGATGAAGGCGTTGTTCAGCCACCACAGCTTGAACTTATTGGTCACTCTATTGCTTGTGCCTCAAATCCTTACCAGGATCCATATTATGCAGGAATGATGGCGGCTTATGGACATCAGCCTTTGGGTTATCCTCCTTTTGTTGGAGTGCCACATGCTAGAATGCCGTTGCCTCTTGAGATGGCACAGGAGCCTGTATATGTCAATGCAAAACAATACCAAGGGATTCTACGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAAGAAGCTAATTAAAGTCAGAAAGCCATATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCAAGAGGTACTGGAGGACGTTTTGCAAGGAAAACAAATGGTGATACTTCAAAGACCACCGGCCAAGAAAAGGCATCAATTTCTGGTCCAGCCCATTCATCACAGTCTGCCAGTTCATCAGGCTCAGAGCCCTTGCCCTCAGATTCTGCAGAAACATGGAATTCTTCCACTAGTCAACCGGAAGCTAGTCGACCCCAAGTCCATGATGCATATGCCACTAACAATTATGTAAATGGTAGTGGCTGCTACCAGACTCATGGTGGCTTGCAGGCTTCATTGTATCGTTCGTACTCGGGAAAAAGAGGGGACGAAGGAGACTGTACAGGCCAGCAACGGGGAAGTATGTCTTCAAATCAGGGTTCACAGAGGCGTCTTGCCATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

347

Amino Acids

37.69

Weight (kDa)

8.81

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	172 - 227	3.9e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	847
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	3 cut(s)	220, 398, 411
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	1 cut(s)	57
AcvI	CACGTG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	1027
AfaI	GTAC	4 cut(s)	91, 667, 947, 979
AfiI	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 991
AgsI	TTSAA	5 cut(s)	158, 359, 590, 708, 1008
AhdI	GACNNNNNGTC	1 cut(s)	854
AhlI	ACTAGT	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	285, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	4 cut(s)	298, 355, 598, 842
AluI	AGCT	4 cut(s)	298, 355, 598, 842
Alw26I	GTCTC	1 cut(s)	966
AlwI	GGATC	3 cut(s)	220, 398, 411
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	949
AoxI	GGCC	2 cut(s)	718, 982
ApeKI	GCWGC	3 cut(s)	4, 295, 900
ApoI	RAATTY	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	710
AvaI	CYCGRG	1 cut(s)	949
AvaII	GGWCC	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	789
BbrPI	CACGTG	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	568, 996
BbvI	GCAGC	3 cut(s)	16, 307, 887
BccI	CCATC	5 cut(s)	67, 203, 418, 499, 1043
BceAI	ACGGC	3 cut(s)	104, 475, 572
BciT130I	CCWGG	2 cut(s)	287, 401
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	966
BcuI	ACTAGT	1 cut(s)	827
BfaI	CTAG	3 cut(s)	483, 828, 843
BfmI	CTRYAG	2 cut(s)	318, 804
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	5, 296, 429, 901
BlsI	GCNGC	4 cut(s)	6, 297, 430, 902
Bme1390I	CCNGG	2 cut(s)	287, 401
Bme18I	GGWCC	1 cut(s)	743
BmeRI	GACNNNNNGTC	1 cut(s)	854
BmeT110I	CYCGRG	1 cut(s)	949
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	405, 516
BmrFI	CCNGG	2 cut(s)	287, 401
BmsI	GCATC	3 cut(s)	146, 740, 853
BpiI	GAAGAC	2 cut(s)	568, 996
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	1027
BsaJI	CCNNGG	3 cut(s)	80, 120, 544
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 991
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	4 cut(s)	183, 673, 768, 1039
BseBI	CCWGG	2 cut(s)	287, 401
BseDI	CCNNGG	3 cut(s)	80, 120, 544
BseGI	GGATG	5 cut(s)	59, 137, 229, 305, 1035
BseLI	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 991
BseMII	CTCAG	3 cut(s)	278, 795, 810
BseNI	ACTGG	4 cut(s)	183, 673, 768, 1039
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	16, 307, 887
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	720, 984
BsiHKCI	CYCGRG	1 cut(s)	949
BsiSI	CCGG	2 cut(s)	717, 836
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 991
BsmAI	GTCTC	1 cut(s)	966
BsmFI	GGGAC	1 cut(s)	977
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	720, 984
BsoBI	CYCGRG	1 cut(s)	949
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp1407I	TGTACA	1 cut(s)	977
Bsp143I	GATC	3 cut(s)	40, 212, 403
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	2 cut(s)	720, 984
BspCNI	CTCAG	3 cut(s)	277, 794, 809
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	405, 516
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	220, 398, 411
BsrFI	RCCGGY	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	977
BsrI	ACTGG	4 cut(s)	183, 673, 768, 1039
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	3 cut(s)	80, 120, 544
BssMI	GATC	3 cut(s)	40, 212, 403
BssNI	GRCGYC	1 cut(s)	1027
BssT1I	CCWWGG	2 cut(s)	80, 544
Bst2UI	CCWGG	2 cut(s)	287, 401
Bst4CI	ACNGT	6 cut(s)	67, 94, 313, 322, 762, 977
BstACI	GRCGYC	1 cut(s)	1027
BstAUI	TGTACA	1 cut(s)	977
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	923, 927, 986
BstDEI	CTNAG	3 cut(s)	264, 781, 796
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	5 cut(s)	59, 137, 229, 305, 1035
BstKTI	GATC	3 cut(s)	43, 215, 406
BstMAI	GTCTC	1 cut(s)	966
BstMBI	GATC	3 cut(s)	40, 212, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	287, 401
BstNSI	RCATGY	2 cut(s)	482, 647
BstSCI	CCNGG	2 cut(s)	285, 399
BstSFI	CTRYAG	2 cut(s)	318, 804
BstV1I	GCAGC	3 cut(s)	16, 307, 887
BstV2I	GAAGAC	2 cut(s)	568, 996
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	720, 984
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	59, 137, 229, 305, 1035
BtsIMutI	CAGTG	4 cut(s)	63, 190, 309, 327
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	923, 927, 986
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	743
CseI	GACGC	1 cut(s)	1016
Csp6I	GTAC	4 cut(s)	90, 666, 946, 978
CviAII	CATG	7 cut(s)	326, 479, 626, 644, 813, 860, 914
CviQI	GTAC	4 cut(s)	90, 666, 946, 978
DdeI	CTNAG	3 cut(s)	264, 781, 796
DpnI	GATC	3 cut(s)	42, 214, 405
DpnII	GATC	3 cut(s)	40, 212, 403
DriI	GACNNNNNGTC	1 cut(s)	854
EaeI	YGGCCR	1 cut(s)	718
Eam1105I	GACNNNNNGTC	1 cut(s)	854
Eco130I	CCWWGG	2 cut(s)	80, 544
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	57
Eco72I	CACGTG	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	817
EcoRII	CCWGG	2 cut(s)	285, 399
EcoT14I	CCWWGG	2 cut(s)	80, 544
EcoT22I	ATGCAT	2 cut(s)	139, 868
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	2 cut(s)	80, 544
FaeI	CATG	7 cut(s)	329, 482, 629, 647, 816, 863, 917
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 988, 1020
FaqI	GGGAC	1 cut(s)	977
FatI	CATG	7 cut(s)	325, 478, 625, 643, 812, 859, 913
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	4 cut(s)	5, 296, 429, 901
FokI	GGATG	5 cut(s)	46, 124, 236, 292, 1022
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	4 cut(s)	5, 296, 429, 901
FspBI	CTAG	3 cut(s)	483, 828, 843
GluI	GCNGC	4 cut(s)	5, 296, 429, 901
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	720, 984
HapII	CCGG	2 cut(s)	717, 836
HgaI	GACGC	1 cut(s)	1016
Hin1I	GRCGYC	1 cut(s)	1027
Hin1II	CATG	7 cut(s)	329, 482, 629, 647, 816, 863, 917
HincII	GTYRAC	2 cut(s)	833, 848
HindII	GTYRAC	2 cut(s)	833, 848
HinfI	GANTC	6 cut(s)	169, 179, 550, 629, 800, 910
HpaII	CCGG	2 cut(s)	717, 836
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	3 cut(s)	833, 848, 1019
Hpy188I	TCNGA	7 cut(s)	16, 76, 178, 205, 611, 784, 799
Hpy188III	TCNNGA	4 cut(s)	500, 626, 633, 951
Hpy8I	GTNNAC	3 cut(s)	833, 848, 1019
HpyAV	CCTTC	3 cut(s)	326, 648, 962
HpyCH4III	ACNGT	6 cut(s)	67, 94, 313, 322, 762, 977
HpyCH4IV	ACGT	2 cut(s)	571, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	264, 781, 796
HpySE526I	ACGT	2 cut(s)	571, 676
Hsp92I	GRCGYC	1 cut(s)	1027
Hsp92II	CATG	7 cut(s)	329, 482, 629, 647, 816, 863, 917
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	40, 212, 403
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	16, 307, 887
LweI	GCATC	3 cut(s)	146, 740, 853
MaeI	CTAG	3 cut(s)	483, 828, 843
MaeII	ACGT	2 cut(s)	571, 676
MaeIII	GTNAC	2 cut(s)	246, 368
MalI	GATC	3 cut(s)	42, 214, 405
MboI	GATC	3 cut(s)	40, 212, 403
MboII	GAAGA	6 cut(s)	63, 141, 573, 614, 813, 996
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	5 cut(s)	142, 600, 735, 817, 880
MlyI	GAGTC	2 cut(s)	178, 904
MmeI	TCCRAC	2 cut(s)	253, 448
Mph1103I	ATGCAT	2 cut(s)	139, 868
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	2 cut(s)	717, 836
MspR9I	CCNGG	2 cut(s)	287, 401
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	287, 401
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	3 cut(s)	40, 212, 403
NlaIII	CATG	7 cut(s)	329, 482, 629, 647, 816, 863, 917
NlaIV	GGNNCC	2 cut(s)	405, 516
NmuCI	GTSAC	2 cut(s)	246, 368
NsiI	ATGCAT	2 cut(s)	139, 868
NspI	RCATGY	2 cut(s)	482, 647
PagI	TCATGA	1 cut(s)	625
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	179, 550, 629, 800
PkrI	GCNGC	4 cut(s)	6, 297, 430, 902
PleI	GAGTC	2 cut(s)	177, 904
PmaCI	CACGTG	1 cut(s)	572
PmlI	CACGTG	1 cut(s)	572
PpsI	GAGTC	2 cut(s)	177, 904
Ppu21I	YACGTR	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	285, 399
PspCI	CACGTG	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	285, 399
PspN4I	GGNNCC	2 cut(s)	405, 516
PspPI	GGNCC	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	4 cut(s)	91, 667, 947, 979
RsaNI	GTAC	4 cut(s)	90, 666, 946, 978
RseI	CAYNNNNRTG	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	4 cut(s)	5, 296, 429, 901
Sau3AI	GATC	3 cut(s)	40, 212, 403
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	178, 904
ScrFI	CCNGG	2 cut(s)	287, 401
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	3 cut(s)	146, 740, 853
SfcI	CTRYAG	2 cut(s)	318, 804
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SpeI	ACTAGT	1 cut(s)	827
Sse9I	AATT	5 cut(s)	142, 600, 735, 817, 880
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	3 cut(s)	483, 828, 843
StyD4I	CCNGG	2 cut(s)	285, 399
StyI	CCWWGG	2 cut(s)	80, 544
TaaI	ACNGT	6 cut(s)	67, 94, 313, 322, 762, 977
TaiI	ACGT	2 cut(s)	574, 679
TaqI	TCGA	1 cut(s)	847
TasI	AATT	5 cut(s)	142, 600, 735, 817, 880
TatI	WGTACW	1 cut(s)	977
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	179, 550, 629, 800
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	4 cut(s)	70, 190, 316, 327
TseFI	GTSAC	2 cut(s)	246, 368
TseI	GCWGC	3 cut(s)	4, 295, 900
Tsp45I	GTSAC	2 cut(s)	246, 368
TspDTI	ATGAA	8 cut(s)	135, 294, 345, 614, 642, 744, 762, 921
TspRI	CASTG	4 cut(s)	70, 190, 316, 327
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	2 cut(s)	482, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	914
XmiI	GTMKAC	1 cut(s)	847
XspI	CTAG	3 cut(s)	483, 828, 843
Zsp2I	ATGCAT	2 cut(s)	139, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.