Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

18640608 .. 18645340

Gene Structure 4733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGCCAAAAAACGAAGCTGAAAATCGACTACATGCTCATCCCATCCCACCAAGCGGTGTTTATTCGGAACCGTGGTGGTGCAGTGCTGGGCATAATCCCATCTCCCCAACGGGGACAGGGAGGAATGCAACCAACTCATCTTTGTTAGAATGCCCAAATGGTGGGTCAGAGTCTAATGACGGTCAATCTTTGTCCAATGATGAGACAAATGAAGATGATGATGATGCTACCAAAGATTCACATATTACATCTCCAAGATCAGCTGGAAATTATGGGCAAGATCACCGCAATGTAAAGCATGTTGGATCGGGTGTGCCAACAGTGCGCGATGATTGCCTTGCGCAACCACCACAGCTTGAACTTGTGGGTCACTCGATTGCTTGTGCTTCAAATCCTTACCAGGATCCTTATTATGGTGGAATGATGGCAGCTTATGGACATCAACCTTTGGGCTATCCCCCTTTTCTTGGAATGCCACATGCTAGAATGCCATTGCCTCTTGAGATGGCACAGGAGCCTGTGTATGTAAATGCAAAACAATACCAAGGGATTCTAAGGCGAAGACAGGCACGTGCAAAAGCAGAACTAGAAAGGAAGCTAATAAAAGTCAGGAAGCCATATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCGAGAGGTACTGGAGGACGTTTTGCAAAGAAAACTAATGGTGATAATTCAAACAGCACTAGACAAGAAAAGGGCAGAGGCTCTGGTCCAGCGCACTCATCACAATCCGGCAGTTCATCGGGCTCAGAACCATTTCCCTCGGATTCTGCTGAAACATGGAATTCCCCCAATAGTCAACGGGAAGCAAGAGGTTCCCAAGTGCACGATGCGTATGCAGCTCACAATTATGCAAATGGTAGTGGCTGCTACCAGCCCCATGGTGGTCTGCAGGCTTCAATGTATCCTTCATACTCGGGCAAGAGAGGGGAAGGAGGAGATTGGAAAGGCCAGCAACAGGGCAACATATCTTCGAACCAGGCCTCACAGAGGCGTCTTGCCATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

349

Amino Acids

37.81

Weight (kDa)

8.71

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	57, 289
AclWI	GGATC	3 cut(s)	316, 401, 414
AcsI	RAATTY	1 cut(s)	820
AcvI	CACGTG	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	1030
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	8 cut(s)	56, 114, 164, 416, 470, 920, 994, 1026
AgsI	TTSAA	4 cut(s)	362, 393, 711, 936
AjnI	CCWGG	2 cut(s)	402, 1014
AluBI	AGCT	6 cut(s)	20, 266, 358, 434, 601, 878
AluI	AGCT	6 cut(s)	20, 266, 358, 434, 601, 878
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	860
AlwI	GGATC	3 cut(s)	316, 401, 414
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	2 cut(s)	985, 1017
ApaLI	GTGCAC	1 cut(s)	860
ApeKI	GCWGC	4 cut(s)	4, 431, 875, 903
ApoI	RAATTY	1 cut(s)	820
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	1 cut(s)	792
AspLEI	GCGC	3 cut(s)	330, 346, 754
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	278, 713
AsuII	TTCGAA	1 cut(s)	1010
AvaI	CYCGRG	1 cut(s)	952
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	785
BbrPI	CACGTG	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	4 cut(s)	16, 443, 887, 890
BccI	CCATC	4 cut(s)	53, 110, 421, 502
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	2 cut(s)	404, 1016
BciVI	GTATCC	1 cut(s)	951
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	486, 590, 720
BfmI	CTRYAG	1 cut(s)	926
BfuI	GTATCC	1 cut(s)	951
BisI	GCNGC	4 cut(s)	5, 432, 876, 904
BlsI	GCNGC	4 cut(s)	6, 433, 877, 905
Bme1390I	CCNGG	2 cut(s)	404, 1016
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	4 cut(s)	72, 408, 519, 853
BmrFI	CCNGG	2 cut(s)	404, 1016
BmsI	GCATC	2 cut(s)	217, 856
BpiI	GAAGAC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	1010
BpuEI	CTTGAG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	1030
BsaJI	CCNNGG	4 cut(s)	74, 547, 798, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	8 cut(s)	56, 114, 164, 416, 470, 920, 994, 1026
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	2 cut(s)	298, 494
BseBI	CCWGG	2 cut(s)	404, 1016
BseDI	CCNNGG	4 cut(s)	74, 547, 798, 916
BseGI	GGATG	2 cut(s)	40, 45
BseLI	CCNNNNNNNGG	8 cut(s)	56, 114, 164, 416, 470, 920, 994, 1026
BseMI	GCAATG	2 cut(s)	298, 494
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	1 cut(s)	987
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	4 cut(s)	16, 443, 887, 890
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	987, 1019
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	1 cut(s)	768
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	8 cut(s)	56, 114, 164, 416, 470, 920, 994, 1026
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	4 cut(s)	133, 158, 480, 495
BsnI	GGCC	2 cut(s)	987, 1019
BsoBI	CYCGRG	1 cut(s)	952
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp1286I	GDGCHC	2 cut(s)	785, 864
Bsp143I	GATC	4 cut(s)	260, 283, 308, 406
Bsp19I	CCATGG	1 cut(s)	916
BspACI	CCGC	2 cut(s)	57, 289
BspANI	GGCC	2 cut(s)	987, 1019
BspCNI	CTCAG	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	4 cut(s)	72, 408, 519, 853
BspMAI	CTGCAG	1 cut(s)	930
BspPI	GGATC	3 cut(s)	316, 401, 414
BspT104I	TTCGAA	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	298, 494
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	4 cut(s)	74, 547, 798, 916
BssMI	GATC	4 cut(s)	260, 283, 308, 406
BssNI	GRCGYC	1 cut(s)	1030
BssT1I	CCWWGG	2 cut(s)	547, 916
Bst2UI	CCWGG	2 cut(s)	404, 1016
Bst4CI	ACNGT	3 cut(s)	75, 185, 325
BstACI	GRCGYC	1 cut(s)	1030
BstBAI	YACGTR	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	1010
BstC8I	GCNNGC	2 cut(s)	930, 989
BstDEI	CTNAG	2 cut(s)	557, 784
BstDSI	CCRYGG	2 cut(s)	74, 916
BstENI	CCTNNNNNAGG	1 cut(s)	1024
BstF5I	GGATG	2 cut(s)	40, 45
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	330, 346, 754
BstKTI	GATC	4 cut(s)	263, 286, 311, 409
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	260, 283, 308, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 336, 875
BstNI	CCWGG	2 cut(s)	404, 1016
BstNSI	RCATGY	4 cut(s)	38, 305, 485, 650
BstSCI	CCNGG	2 cut(s)	402, 1014
BstSFI	CTRYAG	1 cut(s)	926
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	16, 443, 887, 890
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	406
BsuI	GTATCC	1 cut(s)	951
BsuRI	GGCC	2 cut(s)	987, 1019
BtgI	CCRYGG	2 cut(s)	74, 916
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	40, 45
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 330
Cac8I	GCNNGC	2 cut(s)	930, 989
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	3 cut(s)	330, 346, 754
Cfr13I	GGNCC	1 cut(s)	746
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	7 cut(s)	35, 302, 482, 629, 647, 816, 917
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	2 cut(s)	557, 784
DpnI	GATC	4 cut(s)	262, 285, 310, 408
DpnII	GATC	4 cut(s)	260, 283, 308, 406
Eco130I	CCWWGG	2 cut(s)	547, 916
Eco147I	AGGCCT	1 cut(s)	1019
Eco24I	GRGCYC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	746
Eco72I	CACGTG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	952
EcoNI	CCTNNNNNAGG	1 cut(s)	1024
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	2 cut(s)	402, 1014
EcoT14I	CCWWGG	2 cut(s)	547, 916
EcoT38I	GRGCYC	1 cut(s)	785
ErhI	CCWWGG	2 cut(s)	547, 916
FaeI	CATG	7 cut(s)	38, 305, 485, 632, 650, 819, 920
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	7 cut(s)	34, 301, 481, 628, 646, 815, 916
Fnu4HI	GCNGC	4 cut(s)	5, 432, 876, 904
FokI	GGATG	2 cut(s)	27, 32
FriOI	GRGCYC	1 cut(s)	785
Fsp4HI	GCNGC	4 cut(s)	5, 432, 876, 904
FspBI	CTAG	3 cut(s)	486, 590, 720
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	3 cut(s)	329, 345, 753
GluI	GCNGC	4 cut(s)	5, 432, 876, 904
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	987, 1019
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	3 cut(s)	330, 346, 754
Hin1I	GRCGYC	1 cut(s)	1030
Hin1II	CATG	7 cut(s)	38, 305, 485, 632, 650, 819, 920
Hin6I	GCGC	3 cut(s)	328, 344, 752
HinP1I	GCGC	3 cut(s)	328, 344, 752
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HinfI	GANTC	5 cut(s)	173, 239, 553, 632, 803
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	2 cut(s)	278, 713
Hpy166II	GTNNAC	2 cut(s)	836, 862
Hpy188I	TCNGA	4 cut(s)	70, 172, 787, 802
Hpy188III	TCNNGA	4 cut(s)	503, 613, 629, 636
Hpy8I	GTNNAC	2 cut(s)	836, 862
HpyAV	CCTTC	3 cut(s)	651, 954, 962
HpyCH4III	ACNGT	3 cut(s)	75, 185, 325
HpyCH4IV	ACGT	2 cut(s)	574, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 336, 875
HpyF3I	CTNAG	2 cut(s)	557, 784
HpySE526I	ACGT	2 cut(s)	574, 679
Hsp92I	GRCGYC	1 cut(s)	1030
Hsp92II	CATG	7 cut(s)	38, 305, 485, 632, 650, 819, 920
HspAI	GCGC	3 cut(s)	328, 344, 752
Kzo9I	GATC	4 cut(s)	260, 283, 308, 406
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	4 cut(s)	16, 443, 887, 890
LweI	GCATC	2 cut(s)	217, 856
MaeI	CTAG	3 cut(s)	486, 590, 720
MaeII	ACGT	2 cut(s)	574, 679
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	262, 285, 310, 408
MboI	GATC	4 cut(s)	260, 283, 308, 406
MboII	GAAGA	4 cut(s)	227, 576, 617, 999
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	785, 864
MluCI	AATT	4 cut(s)	271, 706, 820, 883
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	792
MslI	CAYNNNNRTG	3 cut(s)	291, 645, 885
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	2 cut(s)	404, 1016
Mva1269I	GAATGC	4 cut(s)	133, 158, 480, 495
MvaI	CCWGG	2 cut(s)	404, 1016
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	325, 336, 875
NcoI	CCATGG	1 cut(s)	916
NdeII	GATC	4 cut(s)	260, 283, 308, 406
NlaIII	CATG	7 cut(s)	38, 305, 485, 632, 650, 819, 920
NlaIV	GGNNCC	4 cut(s)	72, 408, 519, 853
NmuCI	GTSAC	1 cut(s)	371
NsbI	TGCGCA	1 cut(s)	345
NspI	RCATGY	4 cut(s)	38, 305, 485, 650
NspV	TTCGAA	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	1019
PctI	GAATGC	4 cut(s)	133, 158, 480, 495
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	4 cut(s)	239, 553, 632, 803
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	6, 433, 877, 905
PleI	GAGTC	1 cut(s)	181
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	402, 1014
PspCI	CACGTG	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	402, 1014
PspN4I	GGNNCC	4 cut(s)	72, 408, 519, 853
PspPI	GGNCC	1 cut(s)	746
PstI	CTGCAG	1 cut(s)	930
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
RseI	CAYNNNNRTG	3 cut(s)	291, 645, 885
SatI	GCNGC	4 cut(s)	5, 432, 876, 904
Sau3AI	GATC	4 cut(s)	260, 283, 308, 406
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	404, 1016
SduI	GDGCHC	2 cut(s)	785, 864
SfaNI	GCATC	2 cut(s)	217, 856
SfcI	CTRYAG	1 cut(s)	926
SfuI	TTCGAA	1 cut(s)	1010
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	3 cut(s)	291, 645, 885
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	271, 706, 820, 883
SseBI	AGGCCT	1 cut(s)	1019
SsiI	CCGC	2 cut(s)	57, 289
SspMI	CTAG	3 cut(s)	486, 590, 720
StuI	AGGCCT	1 cut(s)	1019
StyD4I	CCNGG	2 cut(s)	402, 1014
StyI	CCWWGG	2 cut(s)	547, 916
TaaI	ACNGT	3 cut(s)	75, 185, 325
TaiI	ACGT	2 cut(s)	577, 682
TaqI	TCGA	3 cut(s)	28, 377, 1010
TasI	AATT	4 cut(s)	271, 706, 820, 883
TfiI	GAWTC	4 cut(s)	239, 553, 632, 803
TscAI	CASTG	2 cut(s)	91, 330
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	4 cut(s)	4, 431, 875, 903
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	5 cut(s)	228, 617, 645, 765, 936
TspRI	CASTG	2 cut(s)	91, 330
Van91I	CCANNNNNTGG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	746
XagI	CCTNNNNNAGG	1 cut(s)	1024
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	4 cut(s)	38, 305, 485, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	3 cut(s)	486, 590, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.