Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

30892885 .. 30896395

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0273700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGCACGATCTCAACACAAACGAAGATTCAGACGACGTGATGATAGTTGATTGGAGTACATATGGCTACATTAGTACTCACCCCTCACTCAATTTACGGGATACTGGTGGATTGCAACAAGGCTCTTTCAAACTTCAGTTTGTAGAGTCCACTCTTTTTGTTGAGCCGGATGAGATCATAAGCTTGAGAAAAAGTCTGAAATGCAATTTTAGGGGTGCACAGAGGAATATTGAATATTTGAGGAATTACTGTATAACGTCAAATTTCTTATATTCCAGAAATACACCCCCAACGACTAATGGACAAAATGGAGCAGCCACGTGCCCGAGATTGACAACGGCGACAACCATTGAGTTCTTCACAACAACAAACATATTTGGCACGGCGACGTGCAATAGCTCAAGGAAAGCGTCCAATGGAAAGGTACGAAATAGGTGCCCTCAACAAAAGAAAAAATTCCAAAGAGACGAGGGCTTTAGGAGACGTGTTTCCGTGTTTTCATCTGGTTGGCGGATGGGACAATCAGTAAAAATGAACACCGCTTATCTTAGTGAGCTAATTTTGAAAGAGTGGAAGAAAAAGAAGCATGCACATTGGCGATACAAAAACGCACGTAGAGATTTGATGACACAAGATATTTATCAAATTAAACGAACTTGGAGAAAAGTTTTGCGCATTAGGAGGCGAAGGCATCGTGAACAGAACAACTTTTTAGCTAAGTTCTACATCAAGCGTTTTGAGGAGTTCAAGCATAATATAAAGGTGATTATGTCACGCCCCGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

263

Amino Acids

31.14

Weight (kDa)

10.28

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	438
AciI	CCGC	2 cut(s)	514, 543
AcsI	RAATTY	3 cut(s)	265, 458, 785
AcuI	CTGAAG	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	61, 79, 429
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	133, 236, 568, 751
AjiI	CACGTC	3 cut(s)	40, 393, 488
AluBI	AGCT	4 cut(s)	186, 402, 559, 719
AluI	AGCT	4 cut(s)	186, 402, 559, 719
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	462, 478
Alw44I	GTGCAC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	328
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	3 cut(s)	265, 458, 785
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	7, 678
AsuHPI	GGTGA	2 cut(s)	74, 778
AvaI	CYCGRG	1 cut(s)	328
BaeGI	GKGCMC	3 cut(s)	223, 329, 443
BanI	GGYRCC	1 cut(s)	438
BbrPI	CACGTG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	511
BceAI	ACGGC	2 cut(s)	357, 402
BcgI	CGANNNNNNTGC	2 cut(s)	420, 454
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	462, 478
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmcAI	AGTACT	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	328
BmgBI	CACGTC	3 cut(s)	40, 393, 488
BmiI	GGNNCC	1 cut(s)	440
BmsI	GCATC	1 cut(s)	703
BpuEI	CTTGAG	2 cut(s)	208, 388
BsaAI	YACGTR	2 cut(s)	324, 617
BsaBI	GATNNNNATC	1 cut(s)	642
Bse1I	ACTGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	642
BseGI	GGATG	2 cut(s)	178, 522
BseJI	GATNNNNATC	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	758
BseSI	GKGCMC	3 cut(s)	223, 329, 443
BseXI	GCAGC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	534
BsmAI	GTCTC	2 cut(s)	462, 478
BsmBI	CGTCTC	2 cut(s)	462, 478
BsmFI	GGGAC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	328
Bsp1286I	GDGCHC	3 cut(s)	223, 329, 443
Bsp143I	GATC	2 cut(s)	10, 177
BspACI	CCGC	2 cut(s)	514, 543
BspLI	GGNNCC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	10, 177
Bst4CI	ACNGT	1 cut(s)	254
BstBAI	YACGTR	2 cut(s)	324, 617
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	551, 720
BstF5I	GGATG	2 cut(s)	178, 522
BstHHI	GCGC	2 cut(s)	7, 678
BstKTI	GATC	2 cut(s)	13, 180
BstMAI	GTCTC	2 cut(s)	462, 478
BstMBI	GATC	2 cut(s)	10, 177
BstNSI	RCATGY	1 cut(s)	593
BstSLI	GKGCMC	3 cut(s)	223, 329, 443
BstV1I	GCAGC	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	97
BtrI	CACGTC	3 cut(s)	40, 393, 488
BtsCI	GGATG	2 cut(s)	178, 522
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	2 cut(s)	7, 678
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	3 cut(s)	60, 78, 428
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	1 cut(s)	590
CviJI	RGCY	9 cut(s)	69, 126, 169, 186, 320, 402, 477, 559, 719
CviKI_1	RGCY	9 cut(s)	69, 126, 169, 186, 320, 402, 477, 559, 719
CviQI	GTAC	3 cut(s)	60, 78, 428
DdeI	CTNAG	2 cut(s)	551, 720
DpnI	GATC	2 cut(s)	12, 179
DpnII	GATC	2 cut(s)	10, 177
EciI	GGCGGA	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	328
Esp3I	CGTCTC	2 cut(s)	462, 478
FaeI	CATG	1 cut(s)	593
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	1 cut(s)	589
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	185, 529
Fsp4HI	GCNGC	1 cut(s)	318
FspI	TGCGCA	1 cut(s)	677
GlaI	GCGC	2 cut(s)	6, 677
GluI	GCNGC	1 cut(s)	318
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	7, 678
Hin1II	CATG	1 cut(s)	593
Hin6I	GCGC	2 cut(s)	5, 676
HinP1I	GCGC	2 cut(s)	5, 676
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	2 cut(s)	29, 149
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	74, 778
Hpy166II	GTNNAC	3 cut(s)	153, 221, 701
Hpy188I	TCNGA	2 cut(s)	34, 201
Hpy188III	TCNNGA	2 cut(s)	279, 698
Hpy8I	GTNNAC	3 cut(s)	153, 221, 701
Hpy99I	CGWCG	2 cut(s)	41, 394
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	6 cut(s)	39, 260, 323, 392, 487, 616
HpyCH4V	TGCA	5 cut(s)	118, 207, 221, 396, 593
HpyF3I	CTNAG	2 cut(s)	551, 720
HpySE526I	ACGT	6 cut(s)	39, 260, 323, 392, 487, 616
Hsp92II	CATG	1 cut(s)	593
HspAI	GCGC	2 cut(s)	5, 676
Kzo9I	GATC	2 cut(s)	10, 177
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	4 cut(s)	93, 183, 292, 492
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	703
MaeII	ACGT	6 cut(s)	39, 260, 323, 392, 487, 616
MaeIII	GTNAC	1 cut(s)	774
MalI	GATC	2 cut(s)	12, 179
MboI	GATC	2 cut(s)	10, 177
MboII	GAAGA	3 cut(s)	38, 352, 589
MhlI	GDGCHC	3 cut(s)	223, 329, 443
MluCI	AATT	8 cut(s)	94, 208, 247, 265, 458, 561, 648, 785
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	97, 219, 237, 453, 466, 678, 736
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	651
MspI	CCGG	1 cut(s)	170
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	10, 177
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	774
NsbI	TGCGCA	1 cut(s)	677
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	1 cut(s)	324
PmlI	CACGTG	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	2 cut(s)	324, 617
PspCI	CACGTG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	440
RsaI	GTAC	3 cut(s)	61, 79, 429
RsaNI	GTAC	3 cut(s)	60, 78, 428
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	10, 177
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	223, 329, 443
SfaNI	GCATC	1 cut(s)	703
SmlI	CTYRAG	2 cut(s)	187, 403
SmoI	CTYRAG	2 cut(s)	187, 403
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	8 cut(s)	94, 208, 247, 265, 458, 561, 648, 785
SsiI	CCGC	2 cut(s)	514, 543
SspI	AATATT	2 cut(s)	232, 239
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	6 cut(s)	42, 263, 326, 395, 490, 619
TasI	AATT	8 cut(s)	94, 208, 247, 265, 458, 561, 648, 785
TatI	WGTACW	2 cut(s)	59, 77
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	774
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	774
TspDTI	ATGAA	2 cut(s)	492, 551
TspGWI	ACGGA	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	219
XapI	RAATTY	3 cut(s)	265, 458, 785
XceI	RCATGY	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	458
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.