Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

55568565 .. 55575263

Gene Structure 6699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATGGATTTTTCACGGTCGTCAAGCGGATCTTCTTCAACCCAATTCAACCCTGACATTTTCAAGAACCAGCTTCAGAATCAATTCGCTCAGGCTTATGCCGAAGAGTTCCTTGAGACCCTGGAGGAGGAGGAGGAGGAGGAGGAGGTCTTCCAGTACAGTCACCTACACAGTGAGATTGTATGGAATTGCAGGGAGATTGTGAGATTCCGTGACGCCCAAAATCTAGGGTTTTTTGTTTTCTCTAATTGGCTTCCTTCTCTCTCGAACATCAGATATTTGAGGCATGCAGCCAAAAGTCGTTCAGAATCCAGTGATGACAAATCTGTTTCTGATGATGGATCAAATGAGGATAATGATAATGCCACCAAAAAGTCACAAATGACATCTCCTCAGACAGTTGGAAATAAAAACCAGGATTTGCAGCTTGTTTCGTCCACTGTTCCTACAGTGCATGATGAAGGCGTTGCTCAGCCACCACAGCTTGAACTTATTGGTCACTCTATTGCTTGTGCCTCAAATCCTTACCAGGATCCATATTATGCAGGAATGATGGCGGCTTATGGACATCAGCCTTTGGGTTATCCTCCTTTTGTTGGAGTGCCACATGCTAGAATGCCTTTGCCTCTTGAGATGGCACAGGAGCCTGTATATGTCAATGCAAAACAATACCAAGGGATTCTACGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAAGAAGCTAATTAAAGTCAGAAAGCCATATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCAAGAGGTACTGGAGGACGTTTTGCAAGGAAAACAAATGGTGATACTTCAAAGACCACTGGCCAAGAAAAGGCATCAAGTACTGGTCCAGCCCATTCATCACAGTCTGCCAGTTCATCAGGCTCAGAACCCTTACCCTCAGATTCTGCAGAAACATGGAATTCTTCCACTAGTCAACTGGAAGCTAGTCGACCCCAAATACATAATGCATATGCCACTAACAATTATGTAAATGGTAGTGGCTGCTACCAGACTCATGGCGGCTTGCAGGCTTCATTGTATCGTTCATATTCGGGAAAAAGAGGGGACGAAGGAGACTGTACAGGCCAGCAACGGGGAAGTATGTCTTCAAATCAGGGTTCACAGAGGCGTCTTGCCATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

391

Amino Acids

43.33

Weight (kDa)

6.68

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	215 - 270	4.6e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	976
AciI	CCGC	3 cut(s)	27, 557, 1047
AclWI	GGATC	4 cut(s)	37, 349, 527, 540
AcoI	YGGCCR	1 cut(s)	847
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	1 cut(s)	59
AcvI	CACGTG	1 cut(s)	701
AcyI	GRCGYC	2 cut(s)	216, 1156
AfaI	GTAC	4 cut(s)	158, 796, 868, 1108
AfiI	CCNNNNNNNGG	4 cut(s)	127, 596, 856, 1120
AgsI	TTSAA	7 cut(s)	39, 49, 64, 488, 719, 837, 1137
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	3 cut(s)	120, 414, 528
AluBI	AGCT	5 cut(s)	73, 427, 484, 727, 971
AluI	AGCT	5 cut(s)	73, 427, 484, 727, 971
Alw26I	GTCTC	2 cut(s)	110, 1095
AlwI	GGATC	4 cut(s)	37, 349, 527, 540
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	2 cut(s)	847, 1111
ApeKI	GCWGC	3 cut(s)	290, 424, 1029
ApoI	RAATTY	1 cut(s)	946
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	872
AsuHPI	GGTGA	2 cut(s)	155, 839
AvaII	GGWCC	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	849
BamHI	GGATCC	1 cut(s)	532
BbrPI	CACGTG	1 cut(s)	701
BbsI	GAAGAC	3 cut(s)	142, 697, 1125
BbvI	GCAGC	3 cut(s)	302, 436, 1016
BccI	CCATC	4 cut(s)	332, 547, 628, 1172
BceAI	ACGGC	1 cut(s)	701
BciT130I	CCWGG	3 cut(s)	122, 416, 530
BcoDI	GTCTC	2 cut(s)	110, 1095
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	4 cut(s)	227, 612, 957, 972
BfmI	CTRYAG	2 cut(s)	447, 933
BisI	GCNGC	5 cut(s)	291, 425, 558, 1030, 1048
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	5 cut(s)	292, 426, 559, 1031, 1049
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	3 cut(s)	122, 416, 530
Bme18I	GGWCC	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	872
BmiI	GGNNCC	2 cut(s)	534, 645
BmrFI	CCNGG	3 cut(s)	122, 416, 530
BmsI	GCATC	1 cut(s)	869
BpiI	GAAGAC	3 cut(s)	142, 697, 1125
BpmI	CTGGAG	2 cut(s)	143, 819
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	134, 650
BsaAI	YACGTR	1 cut(s)	701
BsaHI	GRCGYC	2 cut(s)	216, 1156
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	120, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 596, 856, 1120
Bse1I	ACTGG	8 cut(s)	154, 312, 802, 850, 874, 897, 969, 1168
BseBI	CCWGG	3 cut(s)	122, 416, 530
BseDI	CCNNGG	2 cut(s)	120, 673
BseGI	GGATG	1 cut(s)	1164
BseLI	CCNNNNNNNGG	4 cut(s)	127, 596, 856, 1120
BseMII	CTCAG	5 cut(s)	104, 407, 485, 924, 939
BseNI	ACTGG	8 cut(s)	154, 312, 802, 850, 874, 897, 969, 1168
BseRI	GAGGAG	8 cut(s)	140, 143, 146, 149, 152, 155, 158, 381
BseXI	GCAGC	3 cut(s)	302, 436, 1016
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	849, 1113
BsiEI	CGRYCG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	1106
BslI	CCNNNNNNNGG	4 cut(s)	127, 596, 856, 1120
BsmAI	GTCTC	2 cut(s)	110, 1095
BsmFI	GGGAC	1 cut(s)	1106
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	849, 1113
Bso31I	GGTCTC	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	1106
Bsp143I	GATC	3 cut(s)	29, 341, 532
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	3 cut(s)	27, 557, 1047
BspANI	GGCC	2 cut(s)	849, 1113
BspCNI	CTCAG	5 cut(s)	103, 406, 484, 923, 938
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	534, 645
BspMAI	CTGCAG	1 cut(s)	937
BspPI	GGATC	4 cut(s)	37, 349, 527, 540
BspTNI	GGTCTC	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	1106
BsrI	ACTGG	8 cut(s)	154, 312, 802, 850, 874, 897, 969, 1168
BssECI	CCNNGG	2 cut(s)	120, 673
BssMI	GATC	3 cut(s)	29, 341, 532
BssNI	GRCGYC	2 cut(s)	216, 1156
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	3 cut(s)	122, 416, 530
Bst4CI	ACNGT	8 cut(s)	18, 161, 173, 400, 442, 451, 891, 1106
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	216, 1156
BstAUI	TGTACA	1 cut(s)	1106
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	288, 1052, 1056, 1115
BstDEI	CTNAG	5 cut(s)	90, 393, 471, 910, 925
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	1164
BstKTI	GATC	3 cut(s)	32, 344, 535
BstMAI	GTCTC	2 cut(s)	110, 1095
BstMBI	GATC	3 cut(s)	29, 341, 532
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	3 cut(s)	122, 416, 530
BstNSI	RCATGY	3 cut(s)	290, 611, 776
BstSCI	CCNGG	3 cut(s)	120, 414, 528
BstSFI	CTRYAG	2 cut(s)	447, 933
BstV1I	GCAGC	3 cut(s)	302, 436, 1016
BstV2I	GAAGAC	3 cut(s)	142, 697, 1125
BstX2I	RGATCY	2 cut(s)	29, 532
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	2 cut(s)	29, 532
BsuRI	GGCC	2 cut(s)	849, 1113
BtsCI	GGATG	1 cut(s)	1164
BtsIMutI	CAGTG	5 cut(s)	178, 319, 438, 456, 843
Cac8I	GCNNGC	4 cut(s)	288, 1052, 1056, 1115
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	872
CseI	GACGC	2 cut(s)	224, 1145
Csp6I	GTAC	4 cut(s)	157, 795, 867, 1107
CviAII	CATG	7 cut(s)	287, 455, 608, 755, 773, 942, 1043
CviQI	GTAC	4 cut(s)	157, 795, 867, 1107
DdeI	CTNAG	5 cut(s)	90, 393, 471, 910, 925
DpnI	GATC	3 cut(s)	31, 343, 534
DpnII	GATC	3 cut(s)	29, 341, 532
EaeI	YGGCCR	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	872
Eco57I	CTGAAG	1 cut(s)	59
Eco72I	CACGTG	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	946
EcoRII	CCWGG	3 cut(s)	120, 414, 528
EcoT14I	CCWWGG	1 cut(s)	673
EcoT22I	ATGCAT	1 cut(s)	997
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	7 cut(s)	290, 458, 611, 758, 776, 945, 1046
FalI	AAGNNNNNCTT	8 cut(s)	16, 48, 96, 128, 699, 731, 1117, 1149
FaqI	GGGAC	1 cut(s)	1106
FatI	CATG	7 cut(s)	286, 454, 607, 754, 772, 941, 1042
FauNDI	CATATG	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	5 cut(s)	291, 425, 558, 1030, 1048
FokI	GGATG	1 cut(s)	1151
Fsp4HI	GCNGC	5 cut(s)	291, 425, 558, 1030, 1048
FspBI	CTAG	4 cut(s)	227, 612, 957, 972
GluI	GCNGC	5 cut(s)	291, 425, 558, 1030, 1048
GsuI	CTGGAG	2 cut(s)	143, 819
HaeIII	GGCC	2 cut(s)	849, 1113
HgaI	GACGC	2 cut(s)	224, 1145
Hin1I	GRCGYC	2 cut(s)	216, 1156
Hin1II	CATG	7 cut(s)	290, 458, 611, 758, 776, 945, 1046
HincII	GTYRAC	2 cut(s)	962, 977
HindII	GTYRAC	2 cut(s)	962, 977
HinfI	GANTC	7 cut(s)	79, 207, 308, 679, 758, 929, 1039
HphI	GGTGA	2 cut(s)	155, 839
Hpy166II	GTNNAC	4 cut(s)	438, 962, 977, 1148
Hpy188I	TCNGA	8 cut(s)	78, 275, 307, 334, 396, 740, 913, 928
Hpy188III	TCNNGA	6 cut(s)	64, 265, 629, 755, 762, 1080
Hpy8I	GTNNAC	4 cut(s)	438, 962, 977, 1148
HpyAV	CCTTC	4 cut(s)	267, 455, 777, 1091
HpyCH4III	ACNGT	8 cut(s)	18, 161, 173, 400, 442, 451, 891, 1106
HpyCH4IV	ACGT	2 cut(s)	700, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	5 cut(s)	90, 393, 471, 910, 925
HpySE526I	ACGT	2 cut(s)	700, 805
Hsp92I	GRCGYC	2 cut(s)	216, 1156
Hsp92II	CATG	7 cut(s)	290, 458, 611, 758, 776, 945, 1046
Kzo9I	GATC	3 cut(s)	29, 341, 532
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	3 cut(s)	302, 436, 1016
LweI	GCATC	1 cut(s)	869
MaeI	CTAG	4 cut(s)	227, 612, 957, 972
MaeII	ACGT	2 cut(s)	700, 805
MaeIII	GTNAC	4 cut(s)	161, 212, 375, 497
MalI	GATC	3 cut(s)	31, 343, 534
MboI	GATC	3 cut(s)	29, 341, 532
MboII	GAAGA	8 cut(s)	24, 27, 116, 142, 702, 743, 942, 1125
MflI	RGATCY	2 cut(s)	29, 532
MlsI	TGGCCA	1 cut(s)	849
MluCI	AATT	7 cut(s)	44, 83, 187, 247, 729, 946, 1009
MluNI	TGGCCA	1 cut(s)	849
MlyI	GAGTC	1 cut(s)	1033
MmeI	TCCRAC	2 cut(s)	382, 577
Mox20I	TGGCCA	1 cut(s)	849
Mph1103I	ATGCAT	1 cut(s)	997
MroXI	GAANNNNTTC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	849
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	849
MspR9I	CCNGG	3 cut(s)	122, 416, 530
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	3 cut(s)	122, 416, 530
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	3 cut(s)	29, 341, 532
NlaIII	CATG	7 cut(s)	290, 458, 611, 758, 776, 945, 1046
NlaIV	GGNNCC	2 cut(s)	534, 645
NmuCI	GTSAC	4 cut(s)	161, 212, 375, 497
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	3 cut(s)	290, 611, 776
PaeI	GCATGC	1 cut(s)	290
PagI	TCATGA	1 cut(s)	754
PctI	GAATGC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	6 cut(s)	79, 207, 308, 679, 758, 929
PkrI	GCNGC	5 cut(s)	292, 426, 559, 1031, 1049
PleI	GAGTC	1 cut(s)	1033
PmaCI	CACGTG	1 cut(s)	701
PmlI	CACGTG	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	1033
Ppu21I	YACGTR	1 cut(s)	701
Psp6I	CCWGG	3 cut(s)	120, 414, 528
PspCI	CACGTG	1 cut(s)	701
PspGI	CCWGG	3 cut(s)	120, 414, 528
PspN4I	GGNNCC	2 cut(s)	534, 645
PspPI	GGNCC	1 cut(s)	872
PstI	CTGCAG	1 cut(s)	937
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	2 cut(s)	29, 532
RsaI	GTAC	4 cut(s)	158, 796, 868, 1108
RsaNI	GTAC	4 cut(s)	157, 795, 867, 1107
RseI	CAYNNNNRTG	1 cut(s)	771
SalI	GTCGAC	1 cut(s)	975
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	5 cut(s)	291, 425, 558, 1030, 1048
Sau3AI	GATC	3 cut(s)	29, 341, 532
Sau96I	GGNCC	1 cut(s)	872
ScaI	AGTACT	1 cut(s)	868
SchI	GAGTC	1 cut(s)	1033
ScrFI	CCNGG	3 cut(s)	122, 416, 530
SfaNI	GCATC	1 cut(s)	869
SfcI	CTRYAG	2 cut(s)	447, 933
SinI	GGWCC	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	2 cut(s)	113, 629
SmoI	CTYRAG	2 cut(s)	113, 629
SpeI	ACTAGT	1 cut(s)	956
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	7 cut(s)	44, 83, 187, 247, 729, 946, 1009
SsiI	CCGC	3 cut(s)	27, 557, 1047
SspMI	CTAG	4 cut(s)	227, 612, 957, 972
StyD4I	CCNGG	3 cut(s)	120, 414, 528
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	8 cut(s)	18, 161, 173, 400, 442, 451, 891, 1106
TaiI	ACGT	2 cut(s)	703, 808
TaqI	TCGA	2 cut(s)	266, 976
TasI	AATT	7 cut(s)	44, 83, 187, 247, 729, 946, 1009
TatI	WGTACW	3 cut(s)	156, 866, 1106
TauI	GCSGC	2 cut(s)	560, 1050
TfiI	GAWTC	6 cut(s)	79, 207, 308, 679, 758, 929
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	5 cut(s)	178, 319, 445, 456, 850
TseFI	GTSAC	4 cut(s)	161, 212, 375, 497
TseI	GCWGC	3 cut(s)	290, 424, 1029
Tsp45I	GTSAC	4 cut(s)	161, 212, 375, 497
TspDTI	ATGAA	7 cut(s)	474, 743, 771, 873, 891, 1050, 1062
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	5 cut(s)	178, 319, 445, 456, 850
VpaK11BI	GGWCC	1 cut(s)	872
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	946
XceI	RCATGY	3 cut(s)	290, 611, 776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmiI	GTMKAC	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	4 cut(s)	227, 612, 957, 972
ZrmI	AGTACT	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.