Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

50073683 .. 50078517

Gene Structure 4835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG382500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAGCCAAAGTCTGATACTGAAAACCGAATACCTGCTGATCGTCATTCCATTCCACCATCCACTGTTTCTTCAGAACCTTGGTGGCGTACTGTTGGGTATAACCCCACCTCCCCAGCCGTGGCAGGGATAAATGCATCCAATTCATCTTCTTTTGAACGCCCAAAGAGTCGTTCAGAATCCAGTGATGACAAATCTGTTTCTGATGATGGATCAAATGAGGATGATGATAATGCCACCAAAAAGTCACAAATGACATCTCCTCAGTCAGTTGGAAATAAAAACCAGGATTTGCAGCTTGTTTCGTCCACTGTTCCTACAGTGCATGATGAAGGCGTTGCTCAGCCACCACAGCTTGAACTTATTGGTCACTCTATTGCTTGTGCCTCAAATCCTTACCAGGATCCATATTATGCAGGAATGATGGCGGCTTATGGACATCAGCCTTTGGGTTATCCTCCTTTTGTTGGAGTGCCACATGCTAGAATGCCTTTGCCTCTTGAGATGGCACAGGAGCCTGTATATGTCAATGCAAAACAATACCAAGGGATTCTACGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAAGAAGCTAATTAAAGTCAGAAAGCCATATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCAAGAGGTACTGGAGGACGTTTTGCAAGGAAAACAAATGGTGATACTTCAAAGACCACCGGCCAAGAAAAGGCATCAATTTCTGGTCCAGCCCATTCATCACAGTCTGCCAGTTCATCAGGCTCAGAACCCTTACCCTCAGATTCTGCAGAAACATGTAGTCAACCGGAAGCTAGTCGACCCCAAGTACATGATGCATATGCCACTAACAATTATGTAAATGGTAGTGGCTGCTACCAGACTCATGGTGGCTTGCAGGCTTCATTGTATCGTTCGTACTCGGGAAAAAGAAGGGACGAAGGAGACTGTACAGGCCAGCAACGGGGAAGTATGTCTTCAAATCAGGGTTCACAGAGGCGTCTTGCCATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

343

Amino Acids

37.29

Weight (kDa)

9.03

Isoelectric Point (pI)

61.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	172 - 227	3.8e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	835
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	3 cut(s)	220, 398, 411
AcoI	YGGCCR	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	57
AcvI	CACGTG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	1015
AfaI	GTAC	5 cut(s)	91, 667, 846, 935, 967
AfiI	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 979
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	5 cut(s)	158, 359, 590, 708, 996
AjnI	CCWGG	2 cut(s)	285, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	4 cut(s)	298, 355, 598, 830
AluI	AGCT	4 cut(s)	298, 355, 598, 830
Alw26I	GTCTC	1 cut(s)	954
AlwI	GGATC	3 cut(s)	220, 398, 411
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	937
AoxI	GGCC	2 cut(s)	718, 970
ApeKI	GCWGC	3 cut(s)	4, 295, 888
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	710
AvaI	CYCGRG	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	568, 984
BbvI	GCAGC	3 cut(s)	16, 307, 875
BccI	CCATC	5 cut(s)	67, 203, 418, 499, 1031
BceAI	ACGGC	2 cut(s)	104, 572
BciT130I	CCWGG	2 cut(s)	287, 401
BcoDI	GTCTC	1 cut(s)	954
BfaI	CTAG	2 cut(s)	483, 831
BfmI	CTRYAG	2 cut(s)	318, 804
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	5, 296, 429, 889
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	4 cut(s)	6, 297, 430, 890
Bme1390I	CCNGG	2 cut(s)	287, 401
Bme18I	GGWCC	1 cut(s)	743
BmeT110I	CYCGRG	1 cut(s)	937
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	405, 516
BmrFI	CCNGG	2 cut(s)	287, 401
BmsI	GCATC	3 cut(s)	146, 740, 841
BpiI	GAAGAC	2 cut(s)	568, 984
BpmI	CTGGAG	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	1015
BsaJI	CCNNGG	3 cut(s)	80, 120, 544
BsaWI	WCCGGW	1 cut(s)	823
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 979
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	4 cut(s)	183, 673, 768, 1027
BseBI	CCWGG	2 cut(s)	287, 401
BseDI	CCNNGG	3 cut(s)	80, 120, 544
BseGI	GGATG	4 cut(s)	59, 137, 229, 1023
BseLI	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 979
BseMII	CTCAG	4 cut(s)	278, 356, 795, 810
BseNI	ACTGG	4 cut(s)	183, 673, 768, 1027
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	16, 307, 875
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	720, 972
BsiHKCI	CYCGRG	1 cut(s)	937
BsiSI	CCGG	2 cut(s)	717, 824
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	5 cut(s)	121, 126, 467, 727, 979
BsmAI	GTCTC	1 cut(s)	954
BsmFI	GGGAC	1 cut(s)	965
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	720, 972
BsoBI	CYCGRG	1 cut(s)	937
Bsp1407I	TGTACA	1 cut(s)	965
Bsp143I	GATC	3 cut(s)	40, 212, 403
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	2 cut(s)	720, 972
BspCNI	CTCAG	4 cut(s)	277, 355, 794, 809
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	405, 516
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	220, 398, 411
BsrFI	RCCGGY	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	965
BsrI	ACTGG	4 cut(s)	183, 673, 768, 1027
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	3 cut(s)	80, 120, 544
BssMI	GATC	3 cut(s)	40, 212, 403
BssNI	GRCGYC	1 cut(s)	1015
BssT1I	CCWWGG	2 cut(s)	80, 544
Bst2UI	CCWGG	2 cut(s)	287, 401
Bst4CI	ACNGT	6 cut(s)	67, 94, 313, 322, 762, 965
BstACI	GRCGYC	1 cut(s)	1015
BstAUI	TGTACA	1 cut(s)	965
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	911, 915, 974
BstDEI	CTNAG	4 cut(s)	264, 342, 781, 796
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	4 cut(s)	59, 137, 229, 1023
BstKTI	GATC	3 cut(s)	43, 215, 406
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	3 cut(s)	40, 212, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	287, 401
BstNSI	RCATGY	3 cut(s)	482, 647, 816
BstSCI	CCNGG	2 cut(s)	285, 399
BstSFI	CTRYAG	2 cut(s)	318, 804
BstV1I	GCAGC	3 cut(s)	16, 307, 875
BstV2I	GAAGAC	2 cut(s)	568, 984
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	720, 972
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	59, 137, 229, 1023
BtsIMutI	CAGTG	4 cut(s)	63, 190, 309, 327
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	911, 915, 974
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	743
CseI	GACGC	1 cut(s)	1004
Csp6I	GTAC	5 cut(s)	90, 666, 845, 934, 966
CviAII	CATG	7 cut(s)	326, 479, 626, 644, 813, 848, 902
CviQI	GTAC	5 cut(s)	90, 666, 845, 934, 966
DdeI	CTNAG	4 cut(s)	264, 342, 781, 796
DpnI	GATC	3 cut(s)	42, 214, 405
DpnII	GATC	3 cut(s)	40, 212, 403
EaeI	YGGCCR	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	80, 544
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	57
Eco72I	CACGTG	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	285, 399
EcoT14I	CCWWGG	2 cut(s)	80, 544
EcoT22I	ATGCAT	2 cut(s)	139, 856
ErhI	CCWWGG	2 cut(s)	80, 544
FaeI	CATG	7 cut(s)	329, 482, 629, 647, 816, 851, 905
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 976, 1008
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	7 cut(s)	325, 478, 625, 643, 812, 847, 901
FauNDI	CATATG	1 cut(s)	856
FblI	GTMKAC	1 cut(s)	835
Fnu4HI	GCNGC	4 cut(s)	5, 296, 429, 889
FokI	GGATG	4 cut(s)	46, 124, 236, 1010
Fsp4HI	GCNGC	4 cut(s)	5, 296, 429, 889
FspBI	CTAG	2 cut(s)	483, 831
GluI	GCNGC	4 cut(s)	5, 296, 429, 889
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	720, 972
HapII	CCGG	2 cut(s)	717, 824
HgaI	GACGC	1 cut(s)	1004
Hin1I	GRCGYC	1 cut(s)	1015
Hin1II	CATG	7 cut(s)	329, 482, 629, 647, 816, 851, 905
HincII	GTYRAC	2 cut(s)	821, 836
HindII	GTYRAC	2 cut(s)	821, 836
HinfI	GANTC	6 cut(s)	169, 179, 550, 629, 800, 898
HpaII	CCGG	2 cut(s)	717, 824
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	4 cut(s)	309, 821, 836, 1007
Hpy188I	TCNGA	7 cut(s)	16, 76, 178, 205, 611, 784, 799
Hpy188III	TCNNGA	4 cut(s)	500, 626, 633, 939
Hpy8I	GTNNAC	4 cut(s)	309, 821, 836, 1007
HpyAV	CCTTC	4 cut(s)	326, 648, 942, 950
HpyCH4III	ACNGT	6 cut(s)	67, 94, 313, 322, 762, 965
HpyCH4IV	ACGT	2 cut(s)	571, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	4 cut(s)	264, 342, 781, 796
HpySE526I	ACGT	2 cut(s)	571, 676
Hsp92I	GRCGYC	1 cut(s)	1015
Hsp92II	CATG	7 cut(s)	329, 482, 629, 647, 816, 851, 905
Kzo9I	GATC	3 cut(s)	40, 212, 403
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	16, 307, 875
LweI	GCATC	3 cut(s)	146, 740, 841
MaeI	CTAG	2 cut(s)	483, 831
MaeII	ACGT	2 cut(s)	571, 676
MaeIII	GTNAC	2 cut(s)	246, 368
MalI	GATC	3 cut(s)	42, 214, 405
MboI	GATC	3 cut(s)	40, 212, 403
MboII	GAAGA	5 cut(s)	63, 141, 573, 614, 984
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	4 cut(s)	142, 600, 735, 868
MlyI	GAGTC	2 cut(s)	178, 892
MmeI	TCCRAC	2 cut(s)	253, 448
Mph1103I	ATGCAT	2 cut(s)	139, 856
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	2 cut(s)	717, 824
MspR9I	CCNGG	2 cut(s)	287, 401
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	287, 401
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	3 cut(s)	40, 212, 403
NlaIII	CATG	7 cut(s)	329, 482, 629, 647, 816, 851, 905
NlaIV	GGNNCC	2 cut(s)	405, 516
NmuCI	GTSAC	2 cut(s)	246, 368
NsiI	ATGCAT	2 cut(s)	139, 856
NspI	RCATGY	3 cut(s)	482, 647, 816
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	812
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	179, 550, 629, 800
PkrI	GCNGC	4 cut(s)	6, 297, 430, 890
PleI	GAGTC	2 cut(s)	177, 892
PmaCI	CACGTG	1 cut(s)	572
PmlI	CACGTG	1 cut(s)	572
PpsI	GAGTC	2 cut(s)	177, 892
Ppu21I	YACGTR	1 cut(s)	572
PscI	ACATGT	1 cut(s)	812
Psp6I	CCWGG	2 cut(s)	285, 399
PspCI	CACGTG	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	285, 399
PspN4I	GGNNCC	2 cut(s)	405, 516
PspPI	GGNCC	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	5 cut(s)	91, 667, 846, 935, 967
RsaNI	GTAC	5 cut(s)	90, 666, 845, 934, 966
RseI	CAYNNNNRTG	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	834
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	4 cut(s)	5, 296, 429, 889
Sau3AI	GATC	3 cut(s)	40, 212, 403
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	178, 892
ScrFI	CCNGG	2 cut(s)	287, 401
SfaNI	GCATC	3 cut(s)	146, 740, 841
SfcI	CTRYAG	2 cut(s)	318, 804
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	142, 600, 735, 868
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	2 cut(s)	483, 831
StyD4I	CCNGG	2 cut(s)	285, 399
StyI	CCWWGG	2 cut(s)	80, 544
TaaI	ACNGT	6 cut(s)	67, 94, 313, 322, 762, 965
TaiI	ACGT	2 cut(s)	574, 679
TaqI	TCGA	1 cut(s)	835
TasI	AATT	4 cut(s)	142, 600, 735, 868
TatI	WGTACW	2 cut(s)	844, 965
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	179, 550, 629, 800
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	4 cut(s)	70, 190, 316, 327
TseFI	GTSAC	2 cut(s)	246, 368
TseI	GCWGC	3 cut(s)	4, 295, 888
Tsp45I	GTSAC	2 cut(s)	246, 368
TspDTI	ATGAA	7 cut(s)	135, 345, 614, 642, 744, 762, 909
TspRI	CASTG	4 cut(s)	70, 190, 316, 327
VpaK11BI	GGWCC	1 cut(s)	743
XceI	RCATGY	3 cut(s)	482, 647, 816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	835
XspI	CTAG	2 cut(s)	483, 831
Zsp2I	ATGCAT	2 cut(s)	139, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.