Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Forward (+)

7517070 .. 7518777

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATTCCTCTCTGCTCTCGGCGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAAATTCCTCCTCCGTTACAGCCTCCGGGAACGGATATGACTGGAATTTCCTTCAGGGATCAGCTCTGGATCAATTCATACCCTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCTTTCTACGATACAACTTGCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGAAGATGACAGGTCTAGAATATATGTTAACTGATGCTACTGAACCAAACCTGTTCGTCTTTCGTAAGCAAAAGAGAGATGGTCCTGAGAAAGTCACACCGATGCTAACATATTATATCTTGGATGGTTCTATTTACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGAGTTAGTCGGACTATTTATAATATATCCAAGGCTTTCACTGATGCTGCATCGAAATTGGAGACCATTAGACAAGTTGATACTGAAAACCAGAACGAACCTGCTGAGTCGAAGCCTGCTAGTGAGACAGTTGATCTAAAGGAAATGAAGCGAGTCGATGTCATTCTTACCTCATTATATCGCAAGTTAGCGCCACCACCTCCACCCCCACCCTTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAGGAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAGTTGATCCAATTATCGATCAAGGTCCTGCTAAAAGAATGAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

257

Amino Acids

28.8

Weight (kDa)

4.93

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	36 - 161	2.6e-42	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	538
AciI	CCGC	4 cut(s)	23, 53, 56, 719
AclWI	GGATC	5 cut(s)	66, 126, 137, 222, 725
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	63, 105
AcuI	CTGAAG	2 cut(s)	97, 669
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	5 cut(s)	124, 401, 409, 428, 691
AluI	AGCT	5 cut(s)	124, 401, 409, 428, 691
Alw26I	GTCTC	3 cut(s)	186, 485, 548
AlwI	GGATC	5 cut(s)	66, 126, 137, 222, 725
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	425, 476
ApoI	RAATTY	2 cut(s)	63, 105
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	341, 749
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	227, 245
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	341, 749
BbsI	GAAGAC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	437, 463
BccI	CCATC	2 cut(s)	332, 377
BceAI	ACGGC	2 cut(s)	45, 61
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	3 cut(s)	186, 485, 548
BfaI	CTAG	2 cut(s)	275, 549
BfoI	RGCGCY	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	4 cut(s)	24, 54, 426, 477
BlsI	GCNGC	4 cut(s)	25, 55, 427, 478
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	341, 749
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	341, 749
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	4 cut(s)	283, 351, 463, 488
BpiI	GAAGAC	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	741
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	336, 419, 525
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	60, 393, 720
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	437, 463
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	86
BsmAI	GTCTC	3 cut(s)	186, 485, 548
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	429
Bsp143I	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
BspACI	CCGC	4 cut(s)	23, 53, 56, 719
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	3 cut(s)	337, 418, 526
BspDI	ATCGAT	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	5 cut(s)	66, 126, 137, 222, 725
BspQI	GCTCTTC	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	345, 405, 534
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	9 cut(s)	61, 121, 132, 151, 230, 247, 565, 733, 745
BstMAI	GTCTC	3 cut(s)	186, 485, 548
BstMBI	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	437, 463
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BstZI	CGGCCG	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	341, 749
ClaI	ATCGAT	1 cut(s)	741
DdeI	CTNAG	3 cut(s)	345, 405, 534
DpnI	GATC	9 cut(s)	60, 120, 131, 150, 229, 246, 564, 732, 744
DpnII	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
EciI	GGCGGA	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	2 cut(s)	341, 749
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	97, 669
Eco88I	CYCGRG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	24, 54, 426, 477
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	24, 54, 426, 477
FspBI	CTAG	2 cut(s)	275, 549
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	4 cut(s)	24, 54, 426, 477
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	622
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	5 cut(s)	5, 214, 536, 582, 710
HpaI	GTTAAC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	227, 245
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	222, 441
Hpy188III	TCNNGA	7 cut(s)	127, 146, 242, 259, 275, 344, 647
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	49, 121, 644
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	204, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	345, 405, 534
HspAI	GCGC	1 cut(s)	620
KspAI	GTTAAC	1 cut(s)	288
Kzo9I	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	2 cut(s)	437, 463
LweI	GCATC	4 cut(s)	283, 351, 463, 488
MaeI	CTAG	2 cut(s)	275, 549
MaeIII	GTNAC	4 cut(s)	75, 152, 352, 711
MalI	GATC	9 cut(s)	60, 120, 131, 150, 229, 246, 564, 732, 744
MboI	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
MboII	GAAGA	6 cut(s)	154, 209, 237, 274, 412, 698
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	5 cut(s)	63, 105, 133, 485, 735
MlyI	GAGTC	3 cut(s)	545, 591, 719
MmeI	TCCRAC	1 cut(s)	419
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
NmuCI	GTSAC	2 cut(s)	352, 711
PaeR7I	CTCGAG	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	5, 214
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	25, 55, 427, 478
PleI	GAGTC	3 cut(s)	544, 590, 718
PpsI	GAGTC	3 cut(s)	544, 590, 718
PpuMI	RGGWCCY	1 cut(s)	749
PsiI	TTATAA	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	749
PspPI	GGNCC	2 cut(s)	341, 749
PspPPI	RGGWCCY	1 cut(s)	749
PspXI	VCTCGAGB	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	24, 54, 426, 477
Sau3AI	GATC	9 cut(s)	58, 118, 129, 148, 227, 244, 562, 730, 742
Sau96I	GGNCC	2 cut(s)	341, 749
SchI	GAGTC	3 cut(s)	545, 591, 719
ScrFI	CCNGG	1 cut(s)	87
SfaNI	GCATC	4 cut(s)	283, 351, 463, 488
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	2 cut(s)	341, 749
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	429, 723
SmoI	CTYRAG	2 cut(s)	429, 723
Sse9I	AATT	5 cut(s)	63, 105, 133, 485, 735
SsiI	CCGC	4 cut(s)	23, 53, 56, 719
SspMI	CTAG	2 cut(s)	275, 549
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	559
TaqI	TCGA	8 cut(s)	165, 243, 260, 430, 482, 539, 585, 741
TasI	AATT	5 cut(s)	63, 105, 133, 485, 735
TauI	GCSGC	2 cut(s)	26, 56
TfiI	GAWTC	2 cut(s)	5, 214
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	352, 711
TseI	GCWGC	2 cut(s)	425, 476
Tsp45I	GTSAC	2 cut(s)	352, 711
TspDTI	ATGAA	2 cut(s)	126, 590
TspGWI	ACGGA	2 cut(s)	63, 107
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	341, 749
XapI	RAATTY	2 cut(s)	63, 105
XbaI	TCTAGA	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	429
XspI	CTAG	2 cut(s)	275, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.