Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Reverse (-)

58783331 .. 58786180

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCACGCCGCCGAACATGGAGGGTGGCCCGCCGCAAGTTGTAGCACAGCCGCCGGGGACCGACATGACCGGAATATGCTTCAAGGACCAGCTTTGGCTGAGCTCTTATCCTCTCGATCGCAATCTGGTCTTTGATTACTTTGCAATCTCGCCCTTCTACGACTGGACCTGTAACAATGAACAGCTCCGTCAGCGCGCAATTCACCCTCTTGATATCTCTCACCTCTCCAAAATGACGGGGACAGAATACATGCTGACGGAAGTTACAGAGCCGCACCTGTTTGTTATCCGCAAGCAAAAGAGGGACAGTCCGGAGAAAGTAACACCCATGATGACTTACTATGTGTTGGATGGTTCGATATATCAAGCACCTCAGCTTTGCAATGTTTTTGCAGCTCGAGTTGGACGTGCTCTCTATCATATAAATAAGGCTTTCACCACTGCGTCTTCAAACTTGGAGAAGATTGGATATGTTGATCCTGAAAATGAGACTGCAGCCTCTGAATCCAAGGCTAGCAAAGAGACAATTGACGTAAGGGAATTTAATCGAGTGAACCAAATTGTTCAATCATTATTGCGCAAGCTACCACCAGCCCCACCGCCGCCACCATTCCCAGAAGGCTATGTTCCTGTACCCACTGGAGAAGCCGAGAACGGCTCAGAAACTCAGCAAGCCGGAGAGCCACAACAACCTCCGGTGGATCCCATCATTGATCAAGGCCCAGCTAAAAGAACGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

249

Amino Acids

27.75

Weight (kDa)

5.31

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	26 - 151	2.2e-43	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	581
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	8 cut(s)	11, 32, 35, 53, 275, 292, 602, 605
AclWI	GGATC	3 cut(s)	473, 698, 711
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	542
AfaI	GTAC	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	85, 453, 569
AjiI	CACGTC	1 cut(s)	410
AluBI	AGCT	7 cut(s)	94, 105, 187, 379, 398, 586, 728
AluI	AGCT	7 cut(s)	94, 105, 187, 379, 398, 586, 728
Alw21I	GWGCWC	2 cut(s)	107, 415
Alw26I	GTCTC	2 cut(s)	485, 518
AlwI	GGATC	3 cut(s)	473, 698, 711
AlwNI	CAGNNNCTG	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	3 cut(s)	3, 28, 721
ApeKI	GCWGC	2 cut(s)	395, 497
ApoI	RAATTY	1 cut(s)	542
AspLEI	GCGC	3 cut(s)	198, 200, 582
AspS9I	GGNCC	5 cut(s)	29, 60, 88, 168, 722
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	197, 215, 430
AsuNHI	GCTAGC	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	399
AvaII	GGWCC	3 cut(s)	60, 88, 168
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	107, 415
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	407, 509
BccI	CCATC	2 cut(s)	347, 716
BceAI	ACGGC	1 cut(s)	673
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	485, 518
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	7 cut(s)	11, 35, 53, 275, 396, 498, 605
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	7 cut(s)	12, 36, 54, 276, 397, 499, 606
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	3 cut(s)	60, 88, 168
BmeT110I	CYCGRG	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	5 cut(s)	29, 60, 88, 168, 722
BmiI	GGNNCC	2 cut(s)	61, 705
BmrFI	CCNGG	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	644, 676
BpmI	CTGGAG	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	56, 510
BsaWI	WCCGGW	3 cut(s)	71, 313, 697
Bse1I	ACTGG	2 cut(s)	170, 646
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	56, 510
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	4 cut(s)	92, 389, 675, 683
BseNI	ACTGG	2 cut(s)	170, 646
BsePI	GCGCGC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	407, 509
BseYI	CCCAGC	1 cut(s)	724
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	5, 30, 723
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	107, 415
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	5 cut(s)	56, 72, 314, 678, 698
BslFI	GGGAC	3 cut(s)	73, 256, 320
BsmAI	GTCTC	2 cut(s)	485, 518
BsmFI	GGGAC	3 cut(s)	73, 256, 320
BsnI	GGCC	3 cut(s)	5, 30, 723
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	107, 415
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	118, 478, 703, 715
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	8 cut(s)	11, 32, 35, 53, 275, 292, 602, 605
BspANI	GGCC	3 cut(s)	5, 30, 723
BspCNI	CTCAG	4 cut(s)	93, 388, 674, 682
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	61, 705
BspMAI	CTGCAG	1 cut(s)	499
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	3 cut(s)	473, 698, 711
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	170, 646
BssECI	CCNNGG	2 cut(s)	56, 510
BssHII	GCGCGC	1 cut(s)	196
BssMI	GATC	4 cut(s)	118, 478, 703, 715
BssT1I	CCWWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	311
BstC8I	GCNNGC	6 cut(s)	32, 198, 296, 517, 584, 675
BstDEI	CTNAG	4 cut(s)	101, 375, 661, 669
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	198, 200, 582
BstKTI	GATC	4 cut(s)	121, 481, 706, 718
BstMAI	GTCTC	2 cut(s)	485, 518
BstMBI	GATC	4 cut(s)	118, 478, 703, 715
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	407, 509
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	5, 30, 723
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	441, 639
Cac8I	GCNNGC	6 cut(s)	32, 198, 296, 517, 584, 675
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	3 cut(s)	198, 200, 582
Cfr13I	GGNCC	5 cut(s)	29, 60, 88, 168, 722
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	4 cut(s)	19, 67, 253, 331
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	4 cut(s)	101, 375, 661, 669
DpnI	GATC	4 cut(s)	120, 480, 705, 717
DpnII	GATC	4 cut(s)	118, 478, 703, 715
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	60, 88, 168
Eco53kI	GAGCTC	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	4 cut(s)	22, 70, 256, 334
FaqI	GGGAC	3 cut(s)	73, 256, 320
FatI	CATG	4 cut(s)	18, 66, 252, 330
FauI	CCCGC	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	7 cut(s)	11, 35, 53, 275, 396, 498, 605
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	7 cut(s)	11, 35, 53, 275, 396, 498, 605
FspBI	CTAG	1 cut(s)	516
FspI	TGCGCA	1 cut(s)	581
GlaI	GCGC	3 cut(s)	197, 199, 581
GluI	GCNGC	7 cut(s)	11, 35, 53, 275, 396, 498, 605
GsaI	CCCAGC	1 cut(s)	728
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	3 cut(s)	5, 30, 723
HapII	CCGG	5 cut(s)	56, 72, 314, 678, 698
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	3 cut(s)	198, 200, 582
Hin1II	CATG	4 cut(s)	22, 70, 256, 334
Hin6I	GCGC	3 cut(s)	196, 198, 580
HinP1I	GCGC	3 cut(s)	196, 198, 580
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	5 cut(s)	56, 72, 314, 678, 698
HphI	GGTGA	3 cut(s)	197, 215, 430
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	2 cut(s)	505, 664
Hpy188III	TCNNGA	4 cut(s)	116, 212, 314, 482
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	166, 614
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	409, 534
HpyCH4V	TGCA	4 cut(s)	146, 384, 395, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	4 cut(s)	101, 375, 661, 669
HpySE526I	ACGT	2 cut(s)	409, 534
Hsp92II	CATG	4 cut(s)	22, 70, 256, 334
HspAI	GCGC	3 cut(s)	196, 198, 580
Kpn2I	TCCGGA	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	118, 478, 703, 715
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	407, 509
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	2 cut(s)	409, 534
MaeIII	GTNAC	3 cut(s)	173, 265, 322
MalI	GATC	4 cut(s)	120, 480, 705, 717
MboI	GATC	4 cut(s)	118, 478, 703, 715
MboII	GAAGA	2 cut(s)	441, 475
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	107, 415
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	201, 528, 542, 561
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	330, 385
MnlI	CCTC	8 cut(s)	16, 123, 219, 236, 297, 384, 511, 705
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	56, 72, 314, 678, 698
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	118, 478, 703, 715
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	22, 70, 256, 334
NlaIV	GGNNCC	2 cut(s)	61, 705
NmeAIII	GCCGAG	1 cut(s)	676
NsbI	TGCGCA	1 cut(s)	581
NspI	RCATGY	1 cut(s)	256
PaeR7I	CTCGAG	1 cut(s)	399
PauI	GCGCGC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	7 cut(s)	12, 36, 54, 276, 397, 499, 606
Ple19I	CGATCG	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	61, 705
PspPI	GGNCC	5 cut(s)	29, 60, 88, 168, 722
PspXI	VCTCGAGB	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	703
PteI	GCGCGC	1 cut(s)	196
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	7 cut(s)	11, 35, 53, 275, 396, 498, 605
Sau3AI	GATC	4 cut(s)	118, 478, 703, 715
Sau96I	GGNCC	5 cut(s)	29, 60, 88, 168, 722
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	107, 415
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	399
SinI	GGWCC	3 cut(s)	60, 88, 168
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	4 cut(s)	201, 528, 542, 561
SsiI	CCGC	8 cut(s)	11, 32, 35, 53, 275, 292, 602, 605
SspI	AATATT	1 cut(s)	743
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	412, 537
TaqI	TCGA	4 cut(s)	117, 359, 400, 550
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	4 cut(s)	201, 528, 542, 561
TauI	GCSGC	5 cut(s)	13, 37, 55, 277, 607
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	448, 646
TseI	GCWGC	2 cut(s)	395, 497
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	2 cut(s)	179, 275
TspRI	CASTG	2 cut(s)	448, 646
VpaK11BI	GGWCC	3 cut(s)	60, 88, 168
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	399
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.