Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Forward (+)

26926459 .. 26930583

Gene Structure 4125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCCACGCCGCCGATGCCGCCGCCGAACATGGAGGGTGGCCCGCCGCAAGTTGTAGCACAGCCGCCGGGGACCGACATGACCGGAATATGCTTCAAGGACCAGCTTTGGCTGAGCTCTTATCCTCTCGATCGCAATCTGGTCTTTGATTACTTTGCAATCTCGCCCTTCTACGACTGGACCTGTAATAATGAACAGCTCCGTCAGCGCGCAATTCACCCTCTTGATATCTCTCACCTCTCGGTTTGTGAATTTGTTAGAAAACTTGAGTGTATTAAGGATTTGGAGGAGGAAATTGAAGATACATTGTATAATAATAGGGAACAATTTATAATATTGTGGTCTATTGTCATTGCATTGACCCCAAATGATTGGGATGGAGCAGAGTTCATGGTGGTTACTTGTCTGTTTTGCAGCAAAATGACGGGGACAGAATACATGCTGACGGAAGTTACAGAGCCGCACCTGTTTGTCATCCGCAAGCAAAAGAGGGACAGTCCGGAGAAAGTAACACCTATGATGACTTACTATGTGTTGGATGGTTCGATATATCAAGCACCTCAGCTTTGCAATGTTTTTGCAGCTCGAGTTGGACGCGCTCTCTATCATATAAATAAGGCTTTCACCACTGCGTCTTCAAACTTGGAAAAGATTGGATATGTTGATCCAGAAAATGAGACTGCAGCCTCTGAATCCAAGGCTAGCAAAGAGACAATTGACGTAAGGGAATTTAATCGAGTGAACCAAATTCTTCAATCGTTATTGCGCAAGCTACCACCAGCCCCACCACCGCCACCATTCCCAGAAGGCTATGTTCCTGTACCCACTGGAGAAGCTGAGAACGGCTCAGAAACTCAGCAAGCCGGAGAGCCACAACAACCTCCGGTGGATCCCATCATTGATCAAGGCCCAGCTAAAAGGATGAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

310

Amino Acids

35.05

Weight (kDa)

4.8

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	30 - 213	9.3e-40	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
Acc16I	TGCGCA	1 cut(s)	767
AccII	CGCG	2 cut(s)	210, 597
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	9 cut(s)	11, 20, 23, 44, 47, 65, 461, 478, 791
AclWI	GGATC	3 cut(s)	659, 884, 897
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	251, 728, 747
AfaI	GTAC	1 cut(s)	822
AgsI	TTSAA	4 cut(s)	97, 299, 639, 755
AluBI	AGCT	8 cut(s)	106, 117, 199, 565, 584, 772, 836, 914
AluI	AGCT	8 cut(s)	106, 117, 199, 565, 584, 772, 836, 914
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	671, 704
AlwI	GGATC	3 cut(s)	659, 884, 897
AlwNI	CAGNNNCTG	1 cut(s)	689
Ama87I	CYCGRG	1 cut(s)	585
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	3 cut(s)	3, 40, 907
ApeKI	GCWGC	3 cut(s)	414, 581, 683
ApoI	RAATTY	3 cut(s)	251, 728, 747
AspLEI	GCGC	4 cut(s)	210, 212, 599, 768
AspS9I	GGNCC	5 cut(s)	41, 72, 100, 180, 908
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	209, 227, 616
AsuNHI	GCTAGC	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	3 cut(s)	72, 100, 180
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	426, 593, 695
BccI	CCATC	3 cut(s)	371, 533, 902
BceAI	ACGGC	1 cut(s)	859
BclI	TGATCA	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	671, 704
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	681
BisI	GCNGC	9 cut(s)	11, 20, 23, 47, 65, 415, 461, 582, 684
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	9 cut(s)	12, 21, 24, 48, 66, 416, 462, 583, 685
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	3 cut(s)	72, 100, 180
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	5 cut(s)	41, 72, 100, 180, 908
BmiI	GGNNCC	2 cut(s)	73, 891
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	6
BmtI	GCTAGC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	830, 862
BpmI	CTGGAG	1 cut(s)	849
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	68, 696
BsaWI	WCCGGW	3 cut(s)	83, 499, 883
Bse1I	ACTGG	2 cut(s)	182, 832
Bse3DI	GCAATG	2 cut(s)	351, 577
Bse8I	GATNNNNATC	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	68, 696
BseGI	GGATG	4 cut(s)	382, 474, 544, 927
BseJI	GATNNNNATC	1 cut(s)	135
BseMI	GCAATG	2 cut(s)	351, 577
BseMII	CTCAG	5 cut(s)	104, 575, 828, 861, 869
BseNI	ACTGG	2 cut(s)	182, 832
BsePI	GCGCGC	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	426, 593, 695
BseYI	CCCAGC	1 cut(s)	910
Bsh1236I	CGCG	2 cut(s)	210, 597
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	5, 42, 909
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	585
BsiSI	CCGG	5 cut(s)	68, 84, 500, 864, 884
BslFI	GGGAC	3 cut(s)	85, 442, 506
BsmAI	GTCTC	2 cut(s)	671, 704
BsmFI	GGGAC	3 cut(s)	85, 442, 506
BsnI	GGCC	3 cut(s)	5, 42, 909
BsoBI	CYCGRG	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	130, 664, 889, 901
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	9 cut(s)	11, 20, 23, 44, 47, 65, 461, 478, 791
BspANI	GGCC	3 cut(s)	5, 42, 909
BspCNI	CTCAG	5 cut(s)	105, 574, 829, 860, 868
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	2 cut(s)	210, 597
BspLI	GGNNCC	2 cut(s)	73, 891
BspMAI	CTGCAG	1 cut(s)	685
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	3 cut(s)	659, 884, 897
BsrDI	GCAATG	2 cut(s)	351, 577
BsrI	ACTGG	2 cut(s)	182, 832
BssECI	CCNNGG	2 cut(s)	68, 696
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	4 cut(s)	130, 664, 889, 901
BssT1I	CCWWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	497
BstC8I	GCNNGC	6 cut(s)	44, 210, 482, 703, 770, 861
BstDEI	CTNAG	5 cut(s)	113, 561, 837, 847, 855
BstF5I	GGATG	4 cut(s)	382, 474, 544, 927
BstFNI	CGCG	2 cut(s)	210, 597
BstHHI	GCGC	4 cut(s)	210, 212, 599, 768
BstKTI	GATC	4 cut(s)	133, 667, 892, 904
BstMAI	GTCTC	2 cut(s)	671, 704
BstMBI	GATC	4 cut(s)	130, 664, 889, 901
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 19, 205
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	2 cut(s)	210, 597
BstV1I	GCAGC	3 cut(s)	426, 593, 695
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	889
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	889
BsuRI	GGCC	3 cut(s)	5, 42, 909
BtsCI	GGATG	4 cut(s)	382, 474, 544, 927
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	627, 825
Cac8I	GCNNGC	6 cut(s)	44, 210, 482, 703, 770, 861
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	4 cut(s)	210, 212, 599, 768
Cfr13I	GGNCC	5 cut(s)	41, 72, 100, 180, 908
CseI	GACGC	2 cut(s)	603, 621
Csp6I	GTAC	1 cut(s)	821
CviAII	CATG	4 cut(s)	31, 79, 391, 439
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	5 cut(s)	113, 561, 837, 847, 855
DpnI	GATC	4 cut(s)	132, 666, 891, 903
DpnII	GATC	4 cut(s)	130, 664, 889, 901
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	72, 100, 180
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	4 cut(s)	34, 82, 394, 442
FaqI	GGGAC	3 cut(s)	85, 442, 506
FatI	CATG	4 cut(s)	30, 78, 390, 438
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	901
Fnu4HI	GCNGC	9 cut(s)	11, 20, 23, 47, 65, 415, 461, 582, 684
FokI	GGATG	3 cut(s)	389, 461, 551
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	9 cut(s)	11, 20, 23, 47, 65, 415, 461, 582, 684
FspBI	CTAG	1 cut(s)	702
FspI	TGCGCA	1 cut(s)	767
GlaI	GCGC	4 cut(s)	209, 211, 598, 767
GluI	GCNGC	9 cut(s)	11, 20, 23, 47, 65, 415, 461, 582, 684
GsaI	CCCAGC	1 cut(s)	914
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	3 cut(s)	5, 42, 909
HapII	CCGG	5 cut(s)	68, 84, 500, 864, 884
HgaI	GACGC	2 cut(s)	603, 621
HhaI	GCGC	4 cut(s)	210, 212, 599, 768
Hin1II	CATG	4 cut(s)	34, 82, 394, 442
Hin6I	GCGC	4 cut(s)	208, 210, 597, 766
HinP1I	GCGC	4 cut(s)	208, 210, 597, 766
HinfI	GANTC	1 cut(s)	692
HpaII	CCGG	5 cut(s)	68, 84, 500, 864, 884
HphI	GGTGA	3 cut(s)	209, 227, 616
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	2 cut(s)	691, 850
Hpy188III	TCNNGA	4 cut(s)	128, 224, 500, 668
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	2 cut(s)	178, 800
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	6 cut(s)	158, 356, 414, 570, 581, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 19, 205
HpyF3I	CTNAG	5 cut(s)	113, 561, 837, 847, 855
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	4 cut(s)	34, 82, 394, 442
HspAI	GCGC	4 cut(s)	208, 210, 597, 766
Kpn2I	TCCGGA	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	901
Kzo9I	GATC	4 cut(s)	130, 664, 889, 901
LmnI	GCTCC	2 cut(s)	204, 380
Lsp1109I	GCAGC	3 cut(s)	426, 593, 695
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	3 cut(s)	397, 451, 508
MalI	GATC	4 cut(s)	132, 666, 891, 903
MboI	GATC	4 cut(s)	130, 664, 889, 901
MboII	GAAGA	3 cut(s)	311, 627, 743
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	213, 251, 294, 326, 714, 728, 747
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	516, 571
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	276, 732
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	68, 84, 500, 864, 884
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	714
MvnI	CGCG	2 cut(s)	210, 597
MwoI	GCNNNNNNNGC	3 cut(s)	16, 19, 205
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	130, 664, 889, 901
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	4 cut(s)	34, 82, 394, 442
NlaIV	GGNNCC	2 cut(s)	73, 891
NsbI	TGCGCA	1 cut(s)	767
NspI	RCATGY	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	585
PauI	GCGCGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	692
PkrI	GCNGC	9 cut(s)	12, 21, 24, 48, 66, 416, 462, 583, 685
Ple19I	CGATCG	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	910
PspN4I	GGNNCC	2 cut(s)	73, 891
PspPI	GGNCC	5 cut(s)	41, 72, 100, 180, 908
PspXI	VCTCGAGB	1 cut(s)	585
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	889
PteI	GCGCGC	1 cut(s)	208
PvuI	CGATCG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	276, 732
SatI	GCNGC	9 cut(s)	11, 20, 23, 47, 65, 415, 461, 582, 684
Sau3AI	GATC	4 cut(s)	130, 664, 889, 901
Sau96I	GGNCC	5 cut(s)	41, 72, 100, 180, 908
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	681
Sfr274I	CTCGAG	1 cut(s)	585
SinI	GGWCC	3 cut(s)	72, 100, 180
SlaI	CTCGAG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	266, 585
SmoI	CTYRAG	2 cut(s)	266, 585
Sse9I	AATT	7 cut(s)	213, 251, 294, 326, 714, 728, 747
SsiI	CCGC	9 cut(s)	11, 20, 23, 44, 47, 65, 461, 478, 791
SspI	AATATT	2 cut(s)	336, 929
SspMI	CTAG	1 cut(s)	702
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	4 cut(s)	129, 545, 586, 736
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	7 cut(s)	213, 251, 294, 326, 714, 728, 747
TauI	GCSGC	6 cut(s)	13, 22, 25, 49, 67, 463
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	2 cut(s)	276, 732
Tru9I	TTAA	2 cut(s)	276, 732
TscAI	CASTG	2 cut(s)	634, 832
TseI	GCWGC	3 cut(s)	414, 581, 683
TspDTI	ATGAA	2 cut(s)	207, 379
TspGWI	ACGGA	2 cut(s)	191, 461
TspRI	CASTG	2 cut(s)	634, 832
VpaK11BI	GGWCC	3 cut(s)	72, 100, 180
XapI	RAATTY	3 cut(s)	251, 728, 747
XceI	RCATGY	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	585
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.