Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Reverse (-)

72084810 .. 72084983

Gene Structure 174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG451300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGAAGGGCATCCCGGCGGAGGAGGAAATGACCGGCCTATGCTTCAAGGACGAGGCTTGGCTGCAAACATTCCCTCTTGATCGCAATATGGTATTCGAGTACTTCGCCTTGTCTCCTTTTTATGACTGCACCAGCAACAACCAACAACTCCGCAAAGCTCCGTTCACCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

57

Amino Acids

6.71

Weight (kDa)

4.79

Isoelectric Point (pI)

69.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	13 - 52	1.1e-12	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	17, 151
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	32
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	14, 33
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	17, 151
BspANI	GGCC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	100
CviJI	RGCY	4 cut(s)	36, 56, 61, 158
CviKI_1	RGCY	4 cut(s)	36, 56, 61, 158
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	32
FaiI	YATR	3 cut(s)	40, 89, 123
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	2 cut(s)	14, 33
HpaII	CCGG	2 cut(s)	14, 33
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	64, 129
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	27, 46, 145
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	18
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	13, 16, 46, 84
MspI	CCGG	2 cut(s)	14, 33
MspR9I	CCNGG	1 cut(s)	14
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	18
SsiI	CCGC	2 cut(s)	17, 151
StyD4I	CCNGG	1 cut(s)	12
TaqI	TCGA	1 cut(s)	96
TatI	WGTACW	1 cut(s)	99
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.